Bacillus infernus sp. nov., an Fe(III)- and Mn(IV)-Reducing Anaerobe from the Deep Terrestrial Subsurface

References

1. Amy P. S., Haldeman D. L., Ringelberg D., Hall D. H., Russell C. 1992; Comparison of identification systems for classification of bacteria isolated from water and endolithic habitats within the deep subsurface. Appl. Environ. Microbiol. 58:3367–3373
   [Google Scholar]
2. Applied Biosystems, Inc. 1992; Taq DyeDeoxy terminator cycle sequencing kit user bulletin no. 901497, revision E. Applied Biosystems, Inc.; Foster City, Calif:
3. Balkwill D. L., Boone D. R., Colwell F. S., Griffin T., Kieft T. L., Lehman R. M., McKinley J. P., Nierzwicki-Bauer S., Onstott T. C., Tseng H. Y., Gao G., Phelps T. J., Ringelberg D., Russell B., Stevens T. O., White D. C., Wobber F. J. 1994; D.O.E. seeks origin of deep subsurface bacteria. Eos 75:385395–396
   [Google Scholar]
4. Boone D. R., Johnson R. L., Liu Y. 1989; Diffusion of the interspecies electron carriers H₂ and formate in methanogenic ecosystems and its implications in the measurement of K _m for H₂ or formate uptake. Appl. Environ. Microbiol. 55:1735–1741
   [Google Scholar]
5. Boone D. R., Whitman W. B., Rouviere P. 1993; Diversity and taxonomy of methanogens,. 35–80 Ferry J. G. Methanogenesis Chapman & Hall; New York:
   [Google Scholar]
6. Brockman F. J., Kieft T. L., Fredrickson J. K., Bjornstad B. N., Li S. W., Spangenburg W., Long P. E. 1992; Microbiology of vadose zone paleosols in south-central Washington State. Microb. Ecol. 23:279–301
   [Google Scholar]
7. Brosius J., Palmer M. L., Kennedy P. J., Noller H. R. 1978; Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coll . Proc. Natl. Acad. Sci.USA 75:4801–4805
   [Google Scholar]
8. Devereux R., He S. H., Doyle C. L., Orkland S., Stahl D. A., LeGall J., Whitman W. B. 1990; Diversity and origin of Desulfovibrio species: phylogenetic definition of a family. J. Bacteriol. 172:3609–3613
   [Google Scholar]
9. Doetsch R. N. 1981; Determinative methods of light microscopy,. 21–33 Gerhardt P., Murray R. G. E., Costilow R. N., Nester E. W., Wood W. A., Krieg N. R., Phillips G. B. Manual of methods for general bacteriology American Society for Microbiology; Washington, D.C:
   [Google Scholar]
10. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791
    [Google Scholar]
11. Felsenstein J. 1993; PHYL1P (phylogeny inference package), version 3.5c. J. Felsenstein, University of Washington; Seattle:
    [Google Scholar]
12. Fitch W. M., Margoliash E. 1967; Construction of phylogenetic trees. Science 155:279–284
    [Google Scholar]
13. Fredrickson J. K. 1992; DOE explores subsurface biosphere. ASM News 58:183
    [Google Scholar]
14. Fredrickson J. K., Brockman F. J., Workman D. J., Li S. W., Stevens T. O. 1991; Isolation and characterization of a subsurface bacterium capable of growth on toluene, naphthalene, and other aromatic compounds. Appl. Environ. Microbiol. 57:796–803
    [Google Scholar]
15. Ghiorse W. C. 1989; Special issue on deep subsurface microbiology. Geomicrobiol. J. 7:1–35
    [Google Scholar]
16. Ghiorse W. C., , and Wilson J. T. 1988; Microbial ecology of the terrestrial subsurface. Adv. Appl. Microbiol. 33:107–173
    [Google Scholar]
17. Gompertz B. 1825; On the nature of the function expressive of the law of human mortality, and on a new mode of determining the value of life contingencies. Philos. Trans. R. Soc. London 115:513–585
    [Google Scholar]
18. Hungate R. E. 1969; A roll tube method for cultivation of strict anaerobes. Methods Microbiol 3B:117–132
    [Google Scholar]
19. Johnson J. L. 1981; Genetic characterization. 450–472 Gerhardt P., Murray R. G. E., Costilow R. N., Nester E. W., Wood W. A., Krieg N. R., Philips G. B. Manual of methods for general bacteriology American Society for Microbiology; Washington, D.C:
    [Google Scholar]
20. Jukes T. H., Cantor C. R. 1969; Evolution of protein molecules,. 21–132 Munro H. N. Mammalian protein metabolism Academic Press; New York:
    [Google Scholar]
21. Kieft T. L., Amy P. S., Brockman F. J., Fredrickson J. K., Bjornstad B. N., Rosacker L. L. 1993; Microbial abundance and activities in relation to water potential in the vadose zones of arid and semiarid sites. Microb. Ecol. 26:59–78
    [Google Scholar]
22. Lane D. J., Pace G., Olsen G. J., Stahl D. A., Sogin M. L., Pace W. R. 1985; Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc. Natl. Acad. Sci.USA 82:6955–6959
    [Google Scholar]
23. Larsen N., Olsen J. G., Maidak B. L., McCaughey M. J., Overbeek R., Macke T. J., Barsh T. L., Woese C. R. 1993; The ribosomal database project. Nucleic Acids Res. 21:3021–3023
    [Google Scholar]
24. Liu Y., Zhao Z., Balkwill D. L., Boone D. R. 1994; Iron(III)- and manganese(IV)-reducing bacteria from the deep subsurface,. 320 Abstracts of the 94th General Meeting of the American Society for Microbiology 1994 American Society for Microbiology; Washington, D.C:
    [Google Scholar]
25. Lovley D. R., Phillips E. J. 1988; Novel mode of microbial energy metabolism: organic carbon oxidation coupled to dissimilatory reduction of iron or manganese. Appl. Environ. Microbiol. 54:1472–1480
    [Google Scholar]
26. McBride L. J., Koepf S. M., Gibbs R. A., Salser W., Mayrand P. E., Hunkapiller M. W., Kronick M. N. 1989; Automated DNA sequencing methods involving polymerase chain reaction. Clin. Chem. 35:2196–2201
    [Google Scholar]
27. Pedersen K. 1988; Preliminary investigations of deep groundwater microbiology in Swedish granitic rock. Swedish Nuclear Fuel and Waste Management Co.; Stockholm:
    [Google Scholar]
28. Pedersen K., Ekendahl S. 1990; Distribution and activity of bacteria in deep granitic groundwaters of southeastern Sweden. Microb. Ecol. 20:37–52
    [Google Scholar]
29. Rainey F. A., Fritze D., Stackebrandt E. 1994; The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA analysis. FEMS Microbiol. Lett. 115:205–212
    [Google Scholar]
30. Ratkowski D. A., Lowry R. K., McMeekin T. A., Stokes A. N., Chandler R. E. 1983; Model for bacterial culture growth rate throughout the entire biokinetic temperature range. J. Bacteriol. 154:1222–1226
    [Google Scholar]
31. Sambrook J., Fritsch E. F., Maniatis T. 1989; Molecular cloning: a laboratory manual,. , 2. Cold Spring Harbor Laboratory; Cold Spring Harbor, N.Y:
    [Google Scholar]
32. Schachter H. 1975; Enzymic microassays for d-mannose, d-glucose, d-galactose, l-fucose, and d-glucosamine. Methods Enzymol. 41:3–10
    [Google Scholar]
33. Sneath P. H. A. 1986; Endospore-forming gram-positive rods and cocci,. 1104–1105 Sneath P. H. A., Mair N. S., Sharpe M. E., Holt J. G. Bergey’s manual of systematic bacteriology, 2 Williams & Wilkins; Baltimore:
    [Google Scholar]
34. Sørensen J. 1982; Reduction of ferric iron in anaerobic, marine sediment and interaction with reduction of nitrate and sulfate. Appl. Environ. Microbiol. 43:319–324
    [Google Scholar]
35. Stevens T. O. 1994; Personal communication.
36. Swofford D. L. 1993; PAUP: phylogenetic analysis using parsimony, version 3.1.1. Illinois Natural History Survey; Champaign:
    [Google Scholar]
37. Weisburg W. G., Barns S. M., Pelletier D. A., Lane D. J. 1991; 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173:697–703
    [Google Scholar]
38. Zwietering M. H., Jongenburger I., Rombouts F. M., van’t Riet K. 1990; Modeling of the bacterial growth curve. Appl. Environ. Microbiol. 56:1875–1881
    [Google Scholar]