The Phylogeny of the Genera Chryseomonas, Flavimonas, and Pseudomonas Supports Synonymy of These Three Genera

References

1. Felsenstein J. 1985; Confidence limits on phytogenies: an approach using the bootstrap. Evolution 39:783–791
   [Google Scholar]
2. Higgins D. R., Bleasby A. J., Fuchs R. 1992; Clustal V: improved software for multiple sequence alignment. CABIOS 8:189–190
   [Google Scholar]
3. Holmes B., Steigerwalt A. G., Weaver R. E., Brenner D. J. 1986; Chryseomonas polytricha gen. nov., sp. nov., a Pseudomonas-like organism from human clinical specimens and formerly known as group Ve-1. Int. J. Syst. Bacteriol. 36:161–165
   [Google Scholar]
4. Holmes B., Steigerwalt A. G., Weaver R. E., Brenner D. J. 1987; Chryseomonas luteola comb. nov. and Flavimonas oryzihabitans gen. nov., comb, nov., Pseudomonas-like. species from human clinical specimens and formerly known, respectively, as groups Ve-1 and Ve-2. Int. J. Syst. Bacteriol. 37:245–250
   [Google Scholar]
5. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111–120
   [Google Scholar]
6. Kodama K., Kimura N., Komagata K. 1985; Two new species of Pseudomonas: P. oryzihabitans isolated from rice paddy and clinical specimens and P. luteola isolated from clinical specimens. Int. J. Syst. Bacteriol. 35:467–474
   [Google Scholar]
7. Levine M., Soppeland L. 1926; Bacteria in creamery wastes. Bull. Iowa State Agric. Coll. 77:1–72
   [Google Scholar]
8. Oyaizu H., Komagata K. 1983; Grouping of Pseudomonas species on the basis of cellular fatty acid composition and the quinone system with special reference to the existence of 3-hydroxy fatty acids. J. Gen. Appl. Microbiol. 29:17–40
   [Google Scholar]
9. Palleroni N. J. 1984; Genus I. Pseudomonas Migula 1894. 141–199 Krieg N. R., Holt J. G. Bergey’s manual of systematic bacteriology 1 The Williams & Wilkins Co.; Baltimore, Md.:
   [Google Scholar]
10. Palleroni N. J., Bradbury J. F. 1993; Stenotrophomonas, a new bacterial genus for Xanthomonas maltophilia (Hugh 1980) Swings et al. 1983. Int. J. Syst. Bacteriol. 43:606–609
    [Google Scholar]
11. Rossau R., Van Landschoot A., Gillis M., De Ley J. 1991; Taxonomy of Moraxellaceae fam. nov., a new bacterial family to accommodate the genera Moraxella, Acinetobacter, and Psychrobacter and related organisms. Int. J. Syst. Bacteriol. 41:310–319
    [Google Scholar]
12. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406–425
    [Google Scholar]
13. Segers P., Vancanneyt M., Pot B., Torek U., Hoste B., Dewettinck D., Felsen E., Kersters K., De Vos P. 1994; Classification of Pseudomonas diminuta Leifson and Hugh 1954 and Pseudomonas vesicularis Busing, Doll, and Freytag 1953 in Brevundimonas gen. nov. as Brevundimonas diminuta comb. nov. and Brevundimonas vesicularis comb, nov., respectively. Int. J. Syst. Bacteriol. 44:499–510
    [Google Scholar]
14. Tamaoka J., Ha D.-M., Komagata K. 1987; Reclassification of Pseudomonas acidovorans den Dooren de Jong 1926 and Pseudomonas testosteroni Marcus and Talalay 1956 as Comamonas acidovorans comb. nov. and Comamonas testosteroni comb, nov., with an emended description of the genus Comamonas. Int. J. Syst. Bacteriol. 37:52–59
    [Google Scholar]
15. Van Landschoot A., Rossau R., De Ley J. 1986; Intra- and intergeneric similarities of the ribosomal ribonucleic acid cistrons of Acinetobacter. Int. J. Syst. Bacteriol. 36:150–160
    [Google Scholar]
16. Willems A., Busse J., Goor M., Pot B., Falsen E., Jantzen E., Hoste B., Gillis M., Kersters K., Auling G., De Ley J. 1989; Hydrogenophaga, a new genus of hydrogen-oxidizing bacteria that includes Hydrogenophaga flava comb. nov. (formerly Pseudomonas flava), Hydrogenophaga palleroni (formerly Pseudomonas palleroni), Hydrogenophaga pseudoflava (formerly Pseudomonas pseudoflava and “Pseudomonas carboxydoflava”), and Hydrogenophaga taeniospiralis (formerly Pseudomonas taeniospiralis). Int. J. Syst. Bacteriol. 39:319–333
    [Google Scholar]
17. Willems A., Falsen E., Pot B., Jantzen E., Hoste B., Vandamme P., Gillis M., Kersters K., De Ley J. 1990; Acidovoax, a new genus for Pseudomonas facilis, Pseudomonas delafieldii E. Falsen (EF) group 13, EF group 16, and several clinical isolates, with the species Acidovorax facilis comb, nov., Acidovorax delafieldii comb, nov., and Acidovorax temperans sp. nov. Int. J. Syst. Bacteriol. 40:384–398
    [Google Scholar]
18. Woese C. R., Blanz P., Hahn C. M. 1984; What isn’t a pseudomonad: the importance of nomenclature in bacterial classification. Syst. Appl. Microbiol. 5:179–195
    [Google Scholar]
19. Yabuuchi E., Kosako Y., Oyaizu H., Yano I., Hotta H., Hashimoto Y., Ezaki T., Arakawa M. 1992; Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. Microbiol. Immunol. 36:1251–1275
    [Google Scholar]
20. Yabuuchi E., Yano I., Oyaizu H., Hashimoto Y., Ezaki T., Yamamoto H. 1990; Proposals of Sphingomonas paucimobilis gen. nov. and comb, nov., Sphingomonas parapaucimobilis sp. nov., Sphingomonas yanoikuyae sp. nov., Sphingomonas adhaesiva sp. nov., Sphingomonas capsulata comb. nov. and two genospecies of the genus Sphingomonas. Microbiol. Immunol. 34:99–119
    [Google Scholar]