Pyrobaculum ferrireducens sp. nov., a hyperthermophilic Fe(III)-, selenate- and arsenate-reducing crenarchaeon isolated from a hot spring

References

1. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. ( 1990 ). Basic local alignment search tool. . J Mol Biol 215, 403–410. [View Article] [PubMed]
   [Google Scholar]
2. Amo T., Paje M. L. F., Inagaki A., Ezaki S., Atomi H., Imanaka T. ( 2002 ). Pyrobaculum calidifontis sp. nov., a novel hyperthermophilic archaeon that grows in atmospheric air. . Archaea 1, 113–121. [View Article] [PubMed]
   [Google Scholar]
3. Benson D. A., Boguski M. S., Lipman D. J., Ostell J., Ouellette B. F., Rapp B. A., Wheeler D. L. ( 1999 ). GenBank. . Nucleic Acids Res 27, 12–17. [View Article] [PubMed]
   [Google Scholar]
4. Chan P. P., Cozen A. E., Lowe T. M. ( 2013 ). Reclassification of Thermoproteus neutrophilus Stetter and Zillig 1989 as Pyrobaculum neutrophilum comb. nov. based on phylogenetic analysis. . Int J Syst Evol Microbiol 63, 751–754. [View Article] [PubMed]
   [Google Scholar]
5. Feinberg L. F., Srikanth R., Vachet R. W., Holden J. F. ( 2008 ). Constraints on anaerobic respiration in the hyperthermophilic Archaea Pyrobaculum islandicum and Pyrobaculum aerophilum . . Appl Environ Microbiol 74, 396–402. [View Article] [PubMed]
   [Google Scholar]
6. Fischer F., Zillig W., Stetter K. O., Schreiber G. ( 1983 ). Chemolithoautotrophic metabolism of anaerobic extremely thermophilic archaebacteria. . Nature 301, 511–513. [View Article] [PubMed]
   [Google Scholar]
7. Goris J., Konstantinidis K. T., Klappenbach J. A., Coenye T., Vandamme P., Tiedje J. M. ( 2007 ). DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. . Int J Syst Evol Microbiol 57, 81–91. [View Article] [PubMed]
   [Google Scholar]
8. Huber R., Kristjansson J. K., Stetter K. O. ( 1987 ). Pyrobaculum gen. nov., a new genus of neutrophilic, rod-shaped archaebacteria from continental solfataras growing optimally at 100°C. . Arch Microbiol 149, 95–101. [View Article]
   [Google Scholar]
9. Huber R., Huber H., Stetter K. O. ( 2000 ). Towards the ecology of hyperthermophiles: biotopes, new isolation strategies and novel metabolic properties. . FEMS Microbiol Rev 24, 615–623. [View Article] [PubMed]
   [Google Scholar]
10. Itoh T., Nomura N., Sako Y. ( 2003 ). Distribution of 16S rRNA introns among the family Thermoproteaceae and their evolutionary implications. . Extremophiles 7, 229–233.[PubMed]
    [Google Scholar]
11. Mardanov A. V., Gumerov V. M., Slobodkina G. B., Beletsky A. V., Bonch-Osmolovskaya E. A., Ravin N. V., Skryabin K. G. ( 2012 ). Complete genome sequence of strain 1860, a crenarchaeon of the genus Pyrobaculum able to grow with various electron acceptors. . J Bacteriol 194, 727–728. [View Article] [PubMed]
    [Google Scholar]
12. Meier-Kolthoff J. P., Auch A. F., Klenk H.-P., Göker M. ( 2013 ). Genome sequence-based species delimitation with confidence intervals and improved distance functions. . BMC Bioinformatics 14, 60. [View Article] [PubMed]
    [Google Scholar]
13. Richter M., Rosselló-Móra R. ( 2009 ). Shifting the genomic gold standard for the prokaryotic species definition. . Proc Natl Acad Sci U S A 106, 19126–19131. [View Article] [PubMed]
    [Google Scholar]
14. Sako Y., Nunoura T., Uchida A. ( 2001 ). Pyrobaculum oguniense sp. nov., a novel facultatively aerobic and hyperthermophilic archaeon growing at up to 97 degrees C. . Int J Syst Evol Microbiol 51, 303–309.[PubMed]
    [Google Scholar]
15. Salman V., Amann R., Shub D. A., Schulz-Vogt H. N. ( 2012 ). Multiple self-splicing introns in the 16S rRNA genes of giant sulfur bacteria. . Proc Natl Acad Sci U S A 109, 4203–4208. [View Article] [PubMed]
    [Google Scholar]
16. Slobodkin A., Reysenbach A.-L., Strutz N., Dreier M., Wiegel J. ( 1997 ). Thermoterrabacterium ferrireducens gen. nov., sp. nov., a thermophilic anaerobic dissimilatory Fe(III)-reducing bacterium from a continental hot spring. . Int J Syst Bacteriol 47, 541–547. [View Article] [PubMed]
    [Google Scholar]
17. Slobodkin A. I., Tourova T. P., Kuznetsov B. B., Kostrikina N. A., Chernyh N. A., Bonch-Osmolovskaya E. A. ( 1999 ). Thermoanaerobacter siderophilus sp. nov., a novel dissimilatory Fe(III)-reducing, anaerobic, thermophilic bacterium. . Int J Syst Bacteriol 49, 1471–1478. [View Article] [PubMed]
    [Google Scholar]
18. Tamura K., Nei M. ( 1993 ). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. . Mol Biol Evol 10, 512–526.[PubMed]
    [Google Scholar]
19. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. ( 2013 ). mega6: molecular evolutionary genetics analysis version 6.0. . Mol Biol Evol 30, 2725–2729. [View Article] [PubMed]
    [Google Scholar]
20. Tindall B. J., Rosselló-Móra R., Busse H. J., Ludwig W., Kämpfer P. ( 2010 ). Notes on the characterization of prokaryote strains for taxonomic purposes. . Int J Syst Evol Microbiol 60, 249–266. [View Article] [PubMed]
    [Google Scholar]
21. Trueper H. G., Schlegel H. G. ( 1964 ). Sulfur metabolism in Thiorhodaceae. I. Quantitative measurements on growing cells of Chromatium okenii . . Antonie van Leeuwenhoek 30, 225–238. [View Article] [PubMed]
    [Google Scholar]
22. Vargas M., Kashefi K., Blunt-Harris E. L., Lovley D. R. ( 1998 ). Microbiological evidence for Fe(III) reduction on early Earth. . Nature 395, 65–67. [View Article] [PubMed]
    [Google Scholar]
23. Völkl P., Huber R., Drobner E., Rachel R., Burggraf S., Trincone A., Stetter K. O. ( 1993 ). Pyrobaculum aerophilum sp. nov., a novel nitrate-reducing hyperthermophilic archaeum. . Appl Environ Microbiol 59, 2918–2926.[PubMed]
    [Google Scholar]
24. Wolin E. A., Wolin M. J., Wolfe R. S. ( 1963 ). Formation of methane by bacterial extracts. . J Biol Chem 238, 2882–2886.[PubMed]
    [Google Scholar]
25. Yokobori S., Itoh T., Yoshinari S., Nomura N., Sako Y., Yamagishi A., Oshima T., Kita K., Watanabe Y. ( 2009 ). Gain and loss of an intron in a protein-coding gene in Archaea: the case of an archaeal RNA pseudouridine synthase gene. . BMC Evol Biol 9, 198. [View Article] [PubMed]
    [Google Scholar]