Vitellibacter echinoideorum sp. nov., isolated from a sea urchin (Tripneustes gratilla)

References

1. Bernardet J.F., Nakagawa Y., Holmes B. Subcommittee on the taxonomy of Flavobacterium Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes ( 2002;). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52 1049–1070 [View Article] [PubMed].
   [Google Scholar]
2. Collins M.D. ( 1985;). Isoprenoid quinone analysis in classification and identification. . In Chemical Methods in Bacterial Systematics, pp. 267–287. Edited by Goodfellow M., Minnikin D. E. London: Academic Press;.
   [Google Scholar]
3. Dittmer J.C., Lester R.L. ( 1964;). A simple, specific spray for the detection of phospholipids on thin-layer chromatograms. J Lipid Res 5 126–127 [PubMed].
   [Google Scholar]
4. Edwards U., Rogall T., Blöcker H., Emde M., Böttger E.C. ( 1989;). Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17 7843–7853 [View Article] [PubMed].
   [Google Scholar]
5. Felsenstein J. ( 1981;). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17 368–376 [View Article] [PubMed].
   [Google Scholar]
6. Felsenstein J. ( 1985;). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 783–791 [View Article].
   [Google Scholar]
7. Fitch W.M. ( 1971;). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20 406–416 [View Article].
   [Google Scholar]
8. Jacin H., Mishkin A.R. ( 1965;). Separation of carbohydrates on borate-impregnated silica gel G plates. J Chromatogr A 18 170–173 [View Article] [PubMed].
   [Google Scholar]
9. Kim B.-S., Kim O.-S., Moon E.Y., Chun J. ( 2010;). Vitellibacter aestuarii sp. nov., isolated from tidal-flat sediment, and an emended description of the genus Vitellibacter . Int J Syst Evol Microbiol 60 1989–1992 [View Article] [PubMed].
   [Google Scholar]
10. Kim O.S., Cho Y.J., Lee K., Yoon S.H., Kim M., Na H., Park S.C., Jeon Y.S., Lee J.H., other authors. ( 2012;). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62 716–721 [View Article] [PubMed].
    [Google Scholar]
11. Mesbah M., Premachandran U., Whitman W.B. ( 1989;). Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. Int J Syst Bacteriol 39 159–167 [View Article].
    [Google Scholar]
12. Miller L.T. ( 1982;). Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxy acids. J Clin Microbiol 16 584–586 [PubMed].
    [Google Scholar]
13. Minnikin D.E., O'Donnell A.G., Goodfellow M., Alderson G., Athalye M., Schaal K., Parlett J.H. ( 1984;). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2 233–241 [View Article].
    [Google Scholar]
14. Murray R.G.E., Doetsch R.N., Robinow C.F. ( 1994;). Determinative and cytological light microscopy. . In Methods for General and Molecular Bacteriology, pp. 21–41. Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. Washington, DC: American Society for Microbiology;.
    [Google Scholar]
15. Nedashkovskaya O.I., Suzuki M., Vysotskii M.V., Mikhailov V.V. ( 2003;). Vitellibacter vladivostokensis gen. nov., sp. nov., a new member of the phylum Cytophaga-Flavobacterium-Bacteroides . Int J Syst Evol Microbiol 53 1281–1286 [View Article] [PubMed].
    [Google Scholar]
16. Paisley R. ( 1996). MIS Whole Cell Fatty Acid Analysis by Gas Chromatography Training Manual Newark, DE: MIDI;.
    [Google Scholar]
17. Park S., Lee K.-C., Bae K.S., Yoon J.-H. ( 2014;). Vitellibacter soesokkakensis sp. nov., isolated from the junction between the ocean and a freshwater spring and emended description of the genus Vitellibacter . Int J Syst Evol Microbiol 64 588–593 [View Article] [PubMed].
    [Google Scholar]
18. Rajasabapathy R., Mohandass C., Yoon J.-H., Dastager S.G., Liu Q., Khieu T.-N., Son C.K., Li W.J., Colaco A. ( 2015;). Vitellibacter nionensis sp. nov., isolated from a shallow water hydrothermal vent. Int J Syst Evol Microbiol 65 692–697 [View Article] [PubMed].
    [Google Scholar]
19. Ross H.N.M., Grant W.D., Harris J.E. ( 1985;). Lipids in archaebacterial taxonomy. . In Chemical Methods in Bacterial Systematics, pp. 289–300. Edited by Goodfellow M., Minnikin D. E. London: Academic Press;.
    [Google Scholar]
20. Saitou N., Nei M. ( 1987;). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4 406–425 [PubMed].
    [Google Scholar]
21. Sasser M. ( 1990;). Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101 Newark, DE: MIDI Inc;.
    [Google Scholar]
22. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. ( 2013;). mega6: molecular evolutionary genetics analysis version 6.0.. Mol Biol Evol 30 2725–2729 [View Article] [PubMed].
    [Google Scholar]
23. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. ( 1997;). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25 4876–4882 [View Article] [PubMed].
    [Google Scholar]