1887

Abstract

Four isolates of an unknown Gram-stain-positive, catalase-negative coccus-shaped organism, isolated from the pharynx of four wild rabbits, were characterized by phenotypic and molecular genetic methods. The micro-organisms were tentatively assigned to the genus based on cellular morphological and biochemical criteria, although the organisms did not appear to correspond to any species with a validly published name. Comparative 16S rRNA gene sequencing confirmed their identification as members of the genus , being most closely related phylogenetically to 682-03 (96.9  % 16S rRNA gene sequence similarity). Analysis of and gene sequences showed divergence values between the novel species and 682-03 (the closest phylogenetic relative determined from 16S rRNA gene sequences) of 18.1 and 23.9  %, respectively. The novel bacterial isolate could be distinguished from the type strain of by several biochemical characteristics, such as the production of glycyl-tryptophan arylamidase and α-chymotrypsin, and the non-acidification of different sugars. Based on both phenotypic and phylogenetic findings, it is proposed that the unknown bacterium be assigned to a novel species of the genus , and named sp. nov. The type strain is DICM10-00796B ( = CECT 8754 = CCUG 66496).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.000351
2015-09-01
2024-04-27
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/65/9/2903.html?itemId=/content/journal/ijsem/10.1099/ijs.0.000351&mimeType=html&fmt=ahah

References

  1. Delibes-Mateos M., Delibes M., Ferreras P., Villafuerte R. ( 2008;). Key role of European rabbits in the conservation of the Western Mediterranean basin hotspot. Conserv Biol 22 11061117 [View Article] [PubMed] .
    [Google Scholar]
  2. Drancourt M., Roux V., Fournier P.E., Raoult D. ( 2004;). rpoB gene sequence-based identification of aerobic Gram-positive cocci of the genera Streptococcus, Enterococcus, Gemella, Abiotrophia, and Granulicatella . J Clin Microbiol 42 497504 [View Article] [PubMed] .
    [Google Scholar]
  3. Glazunova O.O., Raoult D., Roux V. ( 2009;). Partial sequence comparison of the rpoB, sodA, groEL and gyrB genes within the genus Streptococcus . Int J Syst Evol Microbiol 59 23172322 [PubMed]. [CrossRef]
    [Google Scholar]
  4. Guindon S., Gascuel O. ( 2003;). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52 696704 [View Article] [PubMed] .
    [Google Scholar]
  5. Kim O.S., Cho Y.J., Lee K., Yoon S.H., Kim M., Na H., Park S.C., Jeon Y.S., Lee J.H. otherauthors ( 2012;). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62 716721 [View Article] [PubMed] .
    [Google Scholar]
  6. Kimura M. ( 1980;). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16 111120 [View Article] [PubMed] .
    [Google Scholar]
  7. Kumar S., Tamura K., Nei M. ( 2004;). mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5 150163 [View Article] [PubMed] .
    [Google Scholar]
  8. Page R.D.M. ( 1996;). TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12 357358 [PubMed].
    [Google Scholar]
  9. Poyart C., Quesne G., Coulon S., Berche P., Trieu-Cuot P. ( 1998;). Identification of streptococci to species level by sequencing the gene encoding the manganese-dependent superoxide dismutase. J Clin Microbiol 36 4147 [PubMed].
    [Google Scholar]
  10. Rasmussen S.W. ( 2002). SeqTools, a Program Suite for Sequence Analysis., Copenhagen: Carlsberg Laboratory;.
    [Google Scholar]
  11. Saitou N., Nei M. ( 1987;). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4 406425 [PubMed].
    [Google Scholar]
  12. Vela A.I., Fernández E., Lawson P.A., Latre M.V., Falsen E., Domínguez L., Collins M.D., Fernández-Garayzábal J.F. ( 2002;). Streptococcus entericus sp. nov., isolated from cattle intestine. Int J Syst Evol Microbiol 52 665669 [PubMed]. [CrossRef]
    [Google Scholar]
  13. Vela A.I., Goyache J., Tarradas C., Luque I., Mateos A., Moreno M.A., Borge C., Perea J.A., Domínguez L., Fernández-Garayzábal J.F. ( 2003;). Analysis of genetic diversity of Streptococcus suis clinical isolates from pigs in Spain by pulsed-field gel electrophoresis. J Clin Microbiol 41 24982502 [PubMed]. [CrossRef]
    [Google Scholar]
  14. Vela A.I., Sánchez Del Rey V., Zamora L., Casamayor A., Domínguez L., Fernández-Garayzábal J.F. ( 2014;). Streptococcus cuniculi sp. nov., isolated from the respiratory tract of wild rabbits. Int J Syst Evol 64 24862490 [PubMed]. [CrossRef]
    [Google Scholar]
  15. Whiley R.A., Hardie J.M. ( 2009;). Genus I. Streptococcus Rosenbach 1884, 22AL . . In Bergey's Manual of Systematic Bacteriology, pp. 655711. Edited by de Vos P., Garrity G., Jones D., Krieg N. R., Ludwig W., Rainey F. A., Schleifer K. H., Whitman W. B. vol. 3 , 2nd edn.., New York: Springer;.
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.000351
Loading
/content/journal/ijsem/10.1099/ijs.0.000351
Loading

Data & Media loading...

Supplements

Supplementary Data

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error