1887

Abstract

Two strains (LMG 3947 and LMG 3953) of motile, Gram-negative, violet-pigmented bacteria, respectively isolated in 1972 and before 1953 from environmental samples and previously assigned to , were studied again in detail for their taxonomic position. 16S rRNA gene sequence analysis showed that both strains clustered together with the type strain of (99.8 % sequence similarity for strain LMG 3953 and 98.9 % sequence similarity for LMG 3947). sequence similarities were significantly lower (95–96 %), and fatty acid profiles were also different from those reported for and other species. Both strains exhibit polar-lipid profiles consisting of the major compound phosphatidylethanolamine and moderate amounts of phosphatidylglycerol in addition to some minor lipids. The quinone systems consist of the major compound ubiquinone Q-8 and moderate amounts of Q-7. Polyamine patterns are composed of the major compounds putrescine and 2-hydroxyputrescine, moderate amounts of 1,3-diaminopropane and variable amounts of cadaverine and spermidine. The results of DNA–DNA hybridizations and physiological as well as biochemical tests allowed both genotypic and phenotypic differentiation of the two strains from described species. It is evident from the genotypic and phenotypic data that both strains represent novel species in the genus , for which we propose the names sp. nov. (type strain LMG 3947 =CCM 3329) and sp. nov. (type strain LMG 3953 =CCM 2076 =NCTC 8182).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.008888-0
2009-10-01
2024-04-19
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/59/10/2486.html?itemId=/content/journal/ijsem/10.1099/ijs.0.008888-0&mimeType=html&fmt=ahah

References

  1. Altenburger, P., Kämpfer, P., Makristathis, A., Lubitz, W. & Busse, H.-J.(1996). Classification of bacteria isolated from a medieval wall painting. J Biotechnol 47, 39–52.[CrossRef] [Google Scholar]
  2. Auling, G., Busse, H.-J., Pilz, F., Webb, L., Kneifel, H. & Claus, D.(1991). Rapid differentiation, by polyamine analysis, of Xanthomonas strains from phytopathogenic pseudomonads and other members of the class Proteobacteria interacting with plants. Int J Syst Bacteriol 41, 223–228.[CrossRef] [Google Scholar]
  3. Busse, H.-J. & Auling, G.(1988). Polyamine pattern as a chemotaxonomic marker within the Proteobacteria. Syst Appl Microbiol 11, 1–8.[CrossRef] [Google Scholar]
  4. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors)(1994).Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
  5. Gilman, J. P.(1953). Studies on certain species of bacteria assigned to the genus Chromobacterium. J Bacteriol 65, 48–52. [Google Scholar]
  6. Hamana, K. & Takeuchi, M.(1998). Polyamine profiles as chemotaxonomic markers within alpha, beta, gamma, delta, and epsilon subclasses of class Proteobacteria: distribution of 2-hydroxyputrescine and homospermidine. Microbiol Cult Collect 14, 1–14. [Google Scholar]
  7. Hamana, K., Saito, T. & Okada, M.(2000). Polyamine profiles within the beta subclass of the class Proteobacteria: distribution of 2-hydroxyputrescine. Microbiol Cult Collect 16, 63–69. [Google Scholar]
  8. Hamana, K., Sato, W., Gouma, K., Yu, J., Ino, Y., Umemura, Y., Mochizuki, C., Takatsuka, K., Kigure, Y. & other authors(2007). Cellular polyamine catalogues of the five classes of the phylum Proteobacteria: distributions of homospermidine within the class Alphaproteobacteria, hydroxyputrescine within the class Betaproteobacteria, norspermidine within the class Gammaproteobacteria, and spermidine within the classes Deltaproteobacteria and Epsilonproteobacteria. Ann Gunma Health Sci 27, 1–16. [Google Scholar]
  9. Kämpfer, P. & Kroppenstedt, R. M.(1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989–1005.[CrossRef] [Google Scholar]
  10. Kämpfer, P., Steiof, M. & Dott, W.(1991). Microbiological characterization of a fuel-oil contaminated site including numerical identification of heterotrophic water and soil bacteria. Microb Ecol 21, 227–251.[CrossRef] [Google Scholar]
  11. Kämpfer, P., Dreyer, U., Neef, A., Dott, W. & Busse, H.-J.(2003).Chryseobacterium defluvii sp. nov., isolated from wastewater. Int J Syst Evol Microbiol 53, 93–97.[CrossRef] [Google Scholar]
  12. Kämpfer, P., Falsen, E. & Busse, H.-J.(2008). Reclassification of Pseudomonas mephitica Claydon and Hammer 1939 as a later heterotypic synonym of Janthinobacterium lividum (Eisenberg 1891) De Ley et al. 1978. Int J Syst Evol Microbiol 58, 136–138.[CrossRef] [Google Scholar]
  13. Kumar, S., Tamura, K., Jakobsen, I. B. & Nei, M.(2001).mega2: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244–1245.[CrossRef] [Google Scholar]
  14. Lincoln, S. P., Fermor, T. R. & Tindall, B. J.(1999).Janthinobacterium agaricidamnosum sp. nov., a soft rot pathogen of Agaricus bisporus. Int J Syst Bacteriol 49, 1577–1589.[CrossRef] [Google Scholar]
  15. Scholz, H. C., Witte, A., Tomaso, H., Al Dahouk, S. & Neubauer, H.(2005). Genotyping of Chromobacterium violaceum isolates by recA PCR-RFLP analysis. FEMS Microbiol Lett 244, 347–352.[CrossRef] [Google Scholar]
  16. Stolz, A., Busse, H.-J. & Kämpfer, P.(2007).Pseudomonas knackmussii sp. nov. Int J Syst Evol Microbiol 57, 572–576.[CrossRef] [Google Scholar]
  17. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G.(1997). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876–4882.[CrossRef] [Google Scholar]
  18. Tindall, B. J.(1990a). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13, 128–130.[CrossRef] [Google Scholar]
  19. Tindall, B. J.(1990b). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199–202.[CrossRef] [Google Scholar]
  20. Ziemke, F., Höfle, M. G., Lalucat, J. & Rosselló-Mora, R.(1998). Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48, 179–186.[CrossRef] [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.008888-0
Loading
/content/journal/ijsem/10.1099/ijs.0.008888-0
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error