Streptomyces avicenniae sp. nov., a novel actinomycete isolated from the rhizosphere of the mangrove plant Avicennia mariana

References

1. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J.(1997). Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res 25, 3389–3402.[CrossRef] [Google Scholar]
2. Bull, A. T., Ward, A. C. & Goodfellow, M.(2000). Search and discovery strategies for biotechnology: the paradigm shift. Microbiol Mol Biol Rev 64, 573–606.[CrossRef] [Google Scholar]
3. Chun, J., Lee, J. H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W.(2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259–2261.[CrossRef] [Google Scholar]
4. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E.(1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221–230.[CrossRef] [Google Scholar]
5. Cui, X. L., Mao, P. H., Zeng, M., Li, W. J., Zhang, L. P., Xu, L. H. & Jiang, C. L.(2001).Streptimonospora salina gen. nov., sp. nov., a new member of the family Nocardiopsaceae. Int J Syst Evol Microbiol 51, 357–363. [Google Scholar]
6. Felsenstein, J.(1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.[CrossRef] [Google Scholar]
7. Goodfellow, M.(1971). Numerical taxonomy of some nocardioform bacteria. J Gen Microbiol 69, 33–80.[CrossRef] [Google Scholar]
8. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N.(1974).Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54–63.[CrossRef] [Google Scholar]
9. Hasegawa, T., Takizawa, M. & Tanida, S.(1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319–322.[CrossRef] [Google Scholar]
10. Jennerjahn, T. C. & Ittekkot, V.(2002). Relevance of mangroves for the production and deposition of organic matter along tropical continental margins. Naturwissenschaften 89, 23–30.[CrossRef] [Google Scholar]
11. Jiang, Y., Tang, S. K., Wiese, J., Xu, L. H., Imhoff, J. F. & Jiang, C. L.(2007).Streptomyces hainanensis sp. nov., a novel member of the genus Streptomyces. Int J Syst Evol Microbiol 57, 2694–2698.[CrossRef] [Google Scholar]
12. Kämpfer, P., Kroppenstedt, R. M. & Dott, W.(1991). A numerical classification of the genera Streptomyces and Streptoverticillium using miniaturized physiological tests. J Gen Microbiol 137, 1831–1891.[CrossRef] [Google Scholar]
13. Kämpfer, P., Huber, B., Buczolits, S., Thummes, K., Grun-Wollny, I. & Busse, H.-J.(2008).Streptomyces specialis sp. nov. Int J Syst Evol Microbiol 58, 2602–2606.[CrossRef] [Google Scholar]
14. Kelly, K. L.(1964).Color-name Charts Illustrated with Centroid Colors. Chicago: Inter-Society Color Council-National Bureau of Standards.
15. Kim, S. B., Lonsdale, J., Seong, C. N. & Goodfellow, M.(2003).Streptacidiphilus gen. nov., acidophilic actinomycetes with wall chemotype I and emendation of the family Streptomycetaceae (Waksman and Henrici 1943^AL) emend. Rainey et al. 1997. Antonie Van Leeuwenhoek 83, 107–116.[CrossRef] [Google Scholar]
16. Komagata, K. & Suzuki, K.(1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161–207. [Google Scholar]
17. Kroppenstedt, R. M.(1985). Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics (Society for Applied Bacteriology Technical Series vol. 20), pp. 173–199. Edited by M. Goodfellow & D. E. Minnikin. New York: Academic Press.
18. Kumar, S., Tamura, K. & Nei, M.(2004).mega3: integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 5, 150–163.[CrossRef] [Google Scholar]
19. Labeda, D. P.(1992). DNA-DNA hybridization in the systematics of Streptomyces. Gene 115, 249–253.[CrossRef] [Google Scholar]
20. Lechevalier, M. P. & Lechevalier, H. A.(1980). The chemotaxonomy of actinomycetes. In Actinomycete Taxonomy, pp. 227–291. Edited by A. Dietz & D. W. Thayer. Arlington, VA: Society for Industrial Microbiology.
21. Long, H., Xiang, W., Zhuang, T. & Lin, P.(2005). Microorganism resource of mangrove ecosystems. Chinese Journal of Ecology 24, 696–702. [Google Scholar]
22. Mesbah, M., Premachandran, U. & Whitman, W. B.(1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159–167.[CrossRef] [Google Scholar]
23. Pathom-Aree, W., Stach, J. E., Ward, A. C., Horikoshi, K., Bull, A. T. & Goodfellow, M.(2006). Diversity of actinomycetes isolated from Challenger Deep sediment (10,898 m) from the Mariana Trench. Extremophiles 10, 181–189.[CrossRef] [Google Scholar]
24. Saitou, N. & Nei, M.(1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425. [Google Scholar]
25. Sasser, M.(1990). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20, 16 [Google Scholar]
26. Shirling, E. B. & Gottlieb, D.(1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313–340.[CrossRef] [Google Scholar]
27. Tamaoka, J. & Komagata, K.(1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125–128.[CrossRef] [Google Scholar]
28. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G.(1997). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876–4882.[CrossRef] [Google Scholar]
29. Waksman, S. A. & Henrici, A. T.(1943). The nomenclature and classification of the actinomycetes. J Bacteriol 46, 337–341. [Google Scholar]
30. Weisburg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J.(1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697–703. [Google Scholar]