1887

Abstract

A novel, moderately halophilic, Gram-positive bacterium, designated strain XH-22, was isolated from sediment of a saline lake located near Xilinhot, Inner Mongolia Autonomous Region, China. Cells were rod-shaped, endospore-forming and motile. The isolate was able to grow in the presence of 3–20 % (w/v) total salts (optimum, 10 %, w/v), and at 15–40 °C (optimum, 37 °C) and pH 6.0–10.0 (optimum, pH 7.5). Strain XH-22 had diaminopimelic acid in the cell-wall peptidoglycan, MK-7 as the predominant menaquinone, and anteiso-C, C and iso-C as major fatty acids. The polar lipids comprised diphosphatidylglycerol, phosphatidylglycerol, a glycolipid and two unidentified phospholipids. The DNA G+C content of strain XH-22 was 38.8 mol%. 16S rRNA gene sequence analysis revealed that the novel strain was affiliated with the genus . Levels of 16S rRNA gene sequence similarity between strain XH-22 and the type strains of recognized species ranged from 97.6 % (with ) to 94.9 % (with ). Levels of DNA–DNA relatedness between strain XH-22 and DSM 14868 and DSM 14866 were 32 and 28 %, respectively. Strain XH-22 could be differentiated from recognized species based on phenotypic characteristics, chemotaxonomic differences, phylogenetic analysis and genotypic features. On the basis of these results, strain XH-22 is considered to represent a novel species of the genus , for which the name sp. nov. is proposed. The type strain is XH-22 (=CCM 7562=CECT 7439=DSM 21756).

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2009-12-01
2024-04-28
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References

  1. An, S.-Y., Asahara, M., Goto, K., Kasai, H. & Yokota, A.(2007).Virgibacillus halophilus sp. nov., spore-forming bacteria isolated from soil in Japan. Int J Syst Evol Microbiol 57, 1607–1611.[CrossRef] [Google Scholar]
  2. Arahal, D. R., Márquez, M. C., Volcani, B. E., Schleifer, K. H. & Ventosa, A.(1999).Bacillus marismortui sp. nov., a new moderately halophilic species from the Dead Sea. Int J Syst Bacteriol 49, 1501–1503. [Google Scholar]
  3. Arahal, D. R., Márquez, M. C., Volcani, B. E., Schleifer, K. H. & Ventosa, A.(2000). Reclassification of Bacillus marismortui as Salibacillus marismortui comb. nov. Int J Syst Evol Microbiol 50, 1501–1503.[CrossRef] [Google Scholar]
  4. Bauer, A. W., Kirby, W. M. M., Sherris, J. C. & Turck, M.(1966). Antibiotic susceptibility testing by a standardized single disk method. Am J Clin Pathol 45, 493–496. [Google Scholar]
  5. Carrasco, I. J., Márquez, M. C., Xue, Y., Ma, Y., Cowan, D. A., Jones, B. J., Grant, W. D. & Ventosa, A.(2007).Salsuginibacillus kocurii gen. nov., sp. nov., a moderately halophilic bacterium from soda-lake sediment. Int J Syst Evol Microbiol 57, 2381–2386.[CrossRef] [Google Scholar]
  6. Chen, Y.-G., Cui, X.-L., Fritze, D., Chai, L.-H., Schumann, P., Wen, M.-L., Wang, Y.-X., Xu, L.-H. & Jiang, C.-L.(2008).Virgibacillus kekensis sp. nov., a moderately halophilic bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 58, 647–653.[CrossRef] [Google Scholar]
  7. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y.-W.(2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259–2261.[CrossRef] [Google Scholar]
  8. De Ley, J. & Tijtgat, R.(1970). Evaluation of membrane filter methods for DNA-DNA hybridization. Antonie van Leeuwenhoek 36, 461–474.[CrossRef] [Google Scholar]
  9. Dussault, H. P.(1955). An improved technique for staining red halophilic bacteria. J Bacteriol 70, 484–485. [Google Scholar]
  10. Felsenstein, J.(1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368–376.[CrossRef] [Google Scholar]
  11. Felsenstein, J.(1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.[CrossRef] [Google Scholar]
  12. Fitch, W. M.(1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406–416.[CrossRef] [Google Scholar]
  13. Garabito, M. J., Arahal, D. R., Mellado, E., Márquez, M.-C. & Ventosa, A.(1997).Bacillus salexigens sp. nov., a new moderately halophilic Bacillus species. Int J Syst Bacteriol 47, 735–741.[CrossRef] [Google Scholar]
  14. García, M. T., Ventosa, A., Ruiz-Berraquero, F. & Kocur, M.(1987). Taxonomic study and amended description of Vibrio costicola. Int J Syst Bacteriol 37, 251–256.[CrossRef] [Google Scholar]
  15. Heyndrickx, M., Lebbe, L., Kersters, K., De Vos, P., Forsyth, G. & Logan, N. A.(1998).Virgibacillus: a new genus to accommodate Bacillus pantothenticus (Proom and Knight 1950). Emended description of Virgibacillus pantothenticus. Int J Syst Bacteriol 48, 99–106.[CrossRef] [Google Scholar]
  16. Heyndrickx, M., Lebbe, L., Kersters, K., Hoste, B., De Wachter, R., De Vos, P., Forsyth, G. & Logan, N. A.(1999). Proposal of Virgibacillus promii sp. nov. and emended description of Virgibacillus pantothenticus (Proom and Knight 1950) Heyndrickx et al. 1998. Int J Syst Bacteriol 49, 1083–1090.[CrossRef] [Google Scholar]
  17. Heyrman, J., Logan, N. A., Busse, H.-J., Balcaen, A., Lebbe, L., Rodriguez-Díaz, M., Swings, J. & De Vos, P.(2003).Virgibacillus carmonensis sp. nov., Virgibacillus necropolis sp. nov. and Virgibacillus picturae sp. nov., three novel species isolated from deteriorated mural paintings, transfer of the species of the genus Salibacillus to Virgibacillus, as Virgibacillus marismortui comb. nov. and Virgibacillus salexigens comb. nov., and emended description of the genus Virgibacillus. Int J Syst Evol Microbiol 53, 501–511.[CrossRef] [Google Scholar]
  18. Hua, N.-P., Hamza-Chaffai, A., Vreeland, R. H., Isoda, H. & Naganumal, T.(2008).Virgibacillus salarius sp. nov., a halophilic bacterium isolated from a Saharan salt lake. Int J Syst Evol Microbiol 58, 2409–2414.[CrossRef] [Google Scholar]
  19. Johnson, J. L.(1994). Similarity analysis of DNAs. In Methods for General and Molecular Bacteriology, pp. 655–681. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
  20. Lee, J.-S., Lim, J.-M., Lee, K. C., Lee, J.-C., Park, Y.-H. & Kim, C.-J.(2006).Virgibacillus koreensis sp. nov., a novel bacterium from a salt field, and transfer of Virgibacillus picturae to the genus Oceanobacillus as Oceanobacillus picturae comb. nov. with emended descriptions. Int J Syst Evol Microbiol 56, 251–257.[CrossRef] [Google Scholar]
  21. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, X., Buchner, A., Lai, T., Steppi, S. & other authors(2004).arb: a software environment for sequence data. Nucleic Acids Res 32, 1363–1371.[CrossRef] [Google Scholar]
  22. Marmur, J.(1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208–218.[CrossRef] [Google Scholar]
  23. Marmur, J. & Doty, P.(1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109–118.[CrossRef] [Google Scholar]
  24. Márquez, M. C., Carrasco, I. J., Xue, Y., Ma, Y., Cowan, D. A., Jones, B. J., Grant, W. D. & Ventosa, A.(2007).Aquisalimonas asiatica gen. nov., sp. nov., a moderately halophilic bacterium isolated from an alkaline, saline lake in Inner Mongolia, China. Int J Syst Evol Microbiol 57, 1137–1142.[CrossRef] [Google Scholar]
  25. Owen, R. J. & Hill, L. R.(1979). The estimation of base compositions, base pairing and genome sizes of bacterial deoxyribonucleic acids. In Identification Methods for Microbiologists (Society for Applied Bacteriology Technical Series no. 14), 2nd edn, pp. 277–296. Edited by F. A. Skinner & D. W. Lovelock. London: Academic Press.
  26. Quesada, E., Ventosa, A., Ruiz-Berraquero, F. & Ramos-Cormenzana, A.(1984).Deleya halophila, a new species of moderately halophilic bacteria. Int J Syst Bacteriol 34, 287–292.[CrossRef] [Google Scholar]
  27. Quesada, T., Aguilera, M., Morillo, J. A., Ramos-Cormenzana, A. & Monteoliva-Sánchez, M.(2007).Virgibacillus olivae sp. nov., isolated from waste wash-water from processing of Spanish-style green olives. Int J Syst Evol Microbiol 57, 906–910.[CrossRef] [Google Scholar]
  28. Saitou, N. & Nei, M.(1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425. [Google Scholar]
  29. Stackebrandt, E. & Goebel, B. M.(1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846–849.[CrossRef] [Google Scholar]
  30. Ventosa, A., Quesada, E., Rodriguez-Valera, F., Ruiz-Berraquero, F. & Ramos-Cormenzana, A.(1982). Numerical taxonomy of moderately halophilic Gram-negative rods. J Gen Microbiol 128, 1959–1968. [Google Scholar]
  31. Wang, C.-Y., Chang, C.-C., Ng, C. C., Chen, T.-W. & Shyu, Y.-T.(2008).Virgibacillus chiguensis sp. nov., a novel halophilic bacterium isolated from Chigu, a previously commercial saltern located in southern Taiwan. Int J Syst Evol Microbiol 58, 341–345.[CrossRef] [Google Scholar]
  32. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors(1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463–464.[CrossRef] [Google Scholar]
  33. Yoon, J.-H., Oh, T. K. & Park, Y.-H.(2004). Transfer of Bacillus halodenitrificans Denariaz et al. 1989 to the genus Virgibacillus as Virgibacillus halodenitrificans comb. nov. Int J Syst Evol Microbiol 54, 2163–2167.[CrossRef] [Google Scholar]
  34. Yoon, J.-H., Kang, S. J., Lee, S. Y., Lee, M. H. & Oh, T. K.(2005).Virgibacillus dokdonensis sp. nov., isolated from a Korean island, Dokdo, located at the edge of the East Sea in Korea. Int J Syst Evol Microbiol 55, 1833–1837.[CrossRef] [Google Scholar]
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