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Volume 59, Issue 9

sp. nov., isolated from a rhizosphere soil Free

Abstract

A Gram-positive, milk–white coloured, aerobic strain, YIM 48868, was isolated from the rhizosphere soil of Loes in Xishuangbanna, China. 16S rRNA gene sequence similarity studies showed that strain YIM 48868 was a member of the genus , showing 96.8 % sequence similarity to IM 7744 and 97.0 % similarity to YIM 45725. Chemotaxonomic data (peptidoglycan type I, -diaminopimelic acid; sugar pattern C, glucose, rhamnose and ribose; polar lipids PI, diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol mannosides and phosphatidylinositol) were characteristic of the genus . A phylogenetic tree based on 16S rRNA gene sequences showed that strain YIM 48868 formed a distinct phylogenetic lineage within the genus . Strain YIM 48868 could be differentiated from recognized species by means of phenotypic properties and the predominant menaquinones [MK-9(H), MK-9(H), MK-10(H), MK-10(H)]. The DNA G+C content was 66.6 mol%. The DNA–DNA relatedness values between strain YIM 48868 and the type strains of and were 48.7 % and 53.1 %, respectively. These data, in combination with phenotypic and chemotaxonomic data, demonstrate that strain YIM 48868 represents a novel species in the genus , for which the name sp. nov. is proposed. The type strain is YIM 48868 (=CCTCC AA 208030=DSM 45243).

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Keyword(s): ISP, International Streptomyces project
© SGM
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2009-09-01
2024-04-18
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References

  1. Collins, M. D. & Jones, D.(1980). Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2,4-diaminobutyric acid. J Appl Bacteriol 48, 459–470.[CrossRef] [Google Scholar]
  2. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E.(1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221–230.[CrossRef] [Google Scholar]
  3. Gauze, G. F., Preobrazhenskaya, T. P., Sveshnikova, M. A., Terekova, L. P. & Maksimova, T. S.(1983).Opredelitel’ Aktinomycetov: Rody Streptomyces, Streptoverticillium. Chainia, Moscow: Izd. Nauka (in Russian).
  4. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H. N.(1974).Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54–63.[CrossRef] [Google Scholar]
  5. He, L., Li, W., Huang, Y., Wang, L. M., Liu, Z. H., Lanoot, B. J., Vancanneyt, M. & Swings, J.(2005).Streptomyces jietaisiensis sp. nov., isolated from soil in northern China. Int J Syst Evol Microbiol 55, 1939–1944.[CrossRef] [Google Scholar]
  6. Jiang, Y., Tang, S. K., Wiese, J., Xu, L. H. & Imhoff, F. & Jiang, C. L.(2007).Streptomyces hainanensis sp. nov., a novel member of the genus Streptomyces. Int J Syst Evol Microbiol 57, 2694–2698.[CrossRef] [Google Scholar]
  7. Kämpfer, P. & Kroppenstedt, R. M.(1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989–1005.[CrossRef] [Google Scholar]
  8. Kelly, K. L.(1964).Inter-Society Color Council–National Bureau of Standards Color Name Charts Illustrated with Centroid Colors. Washington, DC: US Government Printing Office.
  9. Kumar, S., Tamura, K. & Nei, M.(2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150–163.[CrossRef] [Google Scholar]
  10. Li, W.-J., Xu, P., Schumann, P., Zhang, Y.-Q., Pukall, R., Xu, L.-H., Stackebrandt, E. & Jiang, C.-L.(2007).Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia. Int J Syst Evol Microbiol 57, 1424–1428.[CrossRef] [Google Scholar]
  11. Mesbah, M., Premachandran, U. & Whitman, W. B.(1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159–167.[CrossRef] [Google Scholar]
  12. Minnikin, D. E., Collins, M. D. & Goodfellow, M.(1979). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47, 87–95.[CrossRef] [Google Scholar]
  13. Pridham, T. G. & Lyons, A. J.(1980). Methodologies for Actinomycetales with special reference to streptomycetes and streptoverticillia. In Actinomycete Taxonomy, pp. 153–224. Special publication no. 6. Edited by A. Dietz & D. W. Thayer. Arlington, VA: Society for Industrial Microbiology.
  14. Sasser, M.(1990).Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
  15. Shirling, E. B. & Gottlieb, D.(1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313–340.[CrossRef] [Google Scholar]
  16. Staneck, J. L. & Roberts, G. D.(1974). Simplified approach to identification of aerobic actinomycetes by thin layer chromatography. Appl Microbiol 28, 226–231. [Google Scholar]
  17. Tamaoka, J., Katayama-Fujimura, Y. & Kuraishi, H.(1983). Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Bacteriol 54, 31–36.[CrossRef] [Google Scholar]
  18. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G.(1997). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876–4882.[CrossRef] [Google Scholar]
  19. Wang, Y. M., Zhang, Z. S., Xu, X. L., Ruan, J. S. & Wang, Y.(2001).Actinopolymorpha singaporensis gen. nov., sp. nov., a novel actinomycete from the tropical rainforest of Singapore. Int J Syst Evol Microbiol 51, 467–473. [Google Scholar]
  20. Wang, Y. X., Zhang, Y. Q., Xu, L. H. & Li, W. J.(2008).Actinopolymorpha rutila sp. nov., isolated from a forest soil. Int J Syst Evol Microbiol 58, 2443–2446.[CrossRef] [Google Scholar]
  21. Xu, P., Li, W. J., Tang, S. K., Zhang, Y. Q., Chen, G. Z., Chen, H. H., Xu, L. H. & Jiang, C. L.(2005).Naxibacter alkalitolerans gen. nov., sp. nov., a novel member of the family Oxalobacteraceae isolated from China. Int J Syst Evol Microbiol 55, 1149–1153.[CrossRef] [Google Scholar]
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