1887

Abstract

The Subcommittee on the Taxonomy of the Suborder of the International Committee on Systematics of Prokaryotes has agreed on minimal standards for describing new genera and species of the suborder . The minimal standards are intended to provide bacteriologists involved in the taxonomy of members of the suborder with a set of essential requirements for the description of new taxa. In addition to sequence data comparisons of 16S rRNA genes or other appropriate conservative genes, phenotypic and genotypic criteria are compiled which are considered essential for the comprehensive characterization of new members of the suborder . Additional features are recommended for the characterization and differentiation of genera and species with validly published names.

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.012971-0
2009-07-01
2024-03-28
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/59/7/1823.html?itemId=/content/journal/ijsem/10.1099/ijs.0.012971-0&mimeType=html&fmt=ahah

References

  1. Ahmad, S., Selvapandiyan, A. & Bhatnagar, R.(1999). A protein-based phylogenetic tree for Gram-positive bacteria derived from hrcA, a unique heat-shock regulatory gene. Int J Syst Bacteriol 49, 1387–1394.[CrossRef] [Google Scholar]
  2. Altenburger, P., Kämpfer, P., Akimov, V. N., Lubitz, W. & Busse, H. J.(1997). Polyamine distribution in actinomycetes with group B peptidoglycan and species of the genera Brevibacterium, Corynebacterium and Tsukamurella. Int J Syst Bacteriol 47, 270–277.[CrossRef] [Google Scholar]
  3. Altenburger, P., Kämpfer, P., Schumann, P., Steiner, R., Lubitz, W. & Busse, H. J.(2002a).Citricoccus muralis gen. nov., sp. nov., a novel actinobacterium isolated from a medieval wall painting. Int J Syst Evol Microbiol 52, 2095–2100.[CrossRef] [Google Scholar]
  4. Altenburger, P., Kämpfer, P., Schumann, P., Vybiral, D., Lubitz, W. & Busse, H. J.(2002b).Georgenia muralis gen. nov., sp. nov., a novel actinobacterium isolated from a medieval wall painting. Int J Syst Evol Microbiol 52, 875–881.[CrossRef] [Google Scholar]
  5. Ames, B. N.(1966). Assay of inorganic phosphate, total phosphate and phosphatase. Methods Enzymol 8, 115–118. [Google Scholar]
  6. An, S.-Y., Xiao, T. & Yokota, A.(2008).Schumannella luteola gen. nov., sp. nov., a novel genus of the family Microbacteriaceae. J Gen Appl Microbiol 54, 253–258.[CrossRef] [Google Scholar]
  7. Archibald, A. R.(1972). Teichoic acids. In General Carbohydrate Methods, Methods in Carbohydrate Chemistry, vol. 6, pp. 162–172. Edited by R. L. Whistler & J. N. BeMiller. London: Academic Press.
  8. Austwick, P. K. C.(1958). Cutaneous streptotrichosis, mycotic dermatitis and strawberry foot root and the genus Dermatophilus Van Saceghem. Vet Rev Annot 4, 33–38. [Google Scholar]
  9. Bakalidou, A., Kämpfer, P., Berchtold, M., Kuhnigk, T., Wenzel, M. & König, H.(2002).Cellulosimicrobium variabile sp. nov., a cellulolytic bacterium from the hindgut of the termite Mastotermes darwiniensis. Int J Syst Evol Microbiol 52, 1185–1192.[CrossRef] [Google Scholar]
  10. Barrow, G. I. & Feltham, R. K. A.(1993).Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd edn. Cambridge: Cambridge University Press.
  11. Becker, B., Lechevalier, M. P., Gordon, R. E. & Lechevalier, H. A.(1964). Rapid differentiation between Nocardia and Streptomyces by paper chromatography of whole cell hydrolysates. Appl Microbiol 12, 421–423. [Google Scholar]
  12. Behrendt, U., Ulrich, A., Schumann, P., Naumann, D. & Suzuki, K.(2002). Diversity of grass-associated Microbacteriaceae isolated from the phyllosphere and litter layer after mulching the sward; polyphasic characterization of Subtercola pratensis sp. nov., Curtobacterium herbarum sp. nov. and Plantibacter flavus gen. nov., sp. nov. Int J Syst Evol Microbiol 52, 1441–1454.[CrossRef] [Google Scholar]
  13. Bergan, T. & Kocur, M.(1982).Stomatococcus mucilaginosus gen. nov., sp. nov., ep. rev., a member of the family Micrococcaceae. Int J Syst Bacteriol 32, 374–377.[CrossRef] [Google Scholar]
  14. Bergey, D. H., Harrison, F. C., Breed, R. S., Hammer, B. W. & Huntoon, F. M.(1923).Bergey's Manual of Determinative Bacteriology. Baltimore, MD: Williams & Wilkins.
  15. Bergmeyer, H. U.(1974).Methoden der Enzymatischen Analyse. Weinheim: Verlag Chemie (in German).
  16. Bernardet, J. F., Nakagawa, Y. & Holmes, B.(2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049–1070.[CrossRef] [Google Scholar]
  17. Breed, R. S.(1953). The families developed from Bacteriaceae Cohn with a description of the family Brevibacteriaceae. Riass Commun VI Congr Int Microbiol Roma 1, 10–15. [Google Scholar]
  18. Brown, J. M., Steigerwalt, A. G., Morey, R. E., Daneshvar, M. I., Romero, L. J. & McNeil, M. M.(2006). Characterization of clinical isolates previously identified as Oerskovia turbata: proposal of Cellulosimicrobium funkei sp. nov. and emended description of the genus Cellulosimicrobium. Int J Syst Evol Microbiol 56, 801–804.[CrossRef] [Google Scholar]
  19. Buczolits, S., Schumann, P., Weidler, G., Radax, C. & Busse, H.-J.(2003).Brachybacterium muris sp. nov., isolated from the liver of a laboratory mouse strain. Int J Syst Evol Microbiol 53, 1955–1960.[CrossRef] [Google Scholar]
  20. Buczolits, S., Schumann, P., Valens, M., Rosselló-Mora, R. & Busse, H.-J.(2008). Identification of a bacterial strain isolated from the liver of a laboratory mouse as Microbacteriumparaoxydans and emended description of the species Microbacteriumparaoxydans Laffineur et al. 2003. Indian J Microbiol 48, 243–251.[CrossRef] [Google Scholar]
  21. Busse, H. J. & Schumann, P.(1999). Polyamine profiles within genera of the class Actinobacteria with ll-diaminopimelic acid in the peptidoglycan. Int J Syst Bacteriol 49, 179–184.[CrossRef] [Google Scholar]
  22. Busse, H.-J., Zlamala, C., Buczolits, S., Lubitz, W., Kämpfer, P. & Takeuchi, M.(2003).Promicromonospora vindobonensis sp. nov. and Promicromonospora aerolata sp. nov., isolated from the air in the medieval ‘Virgilkapelle’ in Vienna. Int J Syst Evol Microbiol 53, 1503–1507.[CrossRef] [Google Scholar]
  23. Cazemier, A. E., Verdoes, J. C., Reubsaet, F. A. G., Hackstein, J. H. P., van der Drift, C. & Op den Camp, H. J. M.(2003).Promicromonospora pachnodae sp. nov., a member of the (hemi)cellulolytic hindgut flora of larvae of the scarab beetle Pachnoda marginata. Antonie van Leeuwenhoek 83, 135–148.[CrossRef] [Google Scholar]
  24. Cazemier, A. E., Verdoes, J. C., Reubsaet, F. A. G., Hackstein, J. H. P., van der Drift, C. & Op den Camp, H. J. M.(2004).Promicromonospora pachnodae sp. nov. In Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSEM, List no. 95. Int J Syst Evol Microbiol 54, 1–2.[CrossRef] [Google Scholar]
  25. Christensen, W. B.(1946). Urea decomposition as a means of differentiating Proteus and paracolon cultures from each other and from Salmonella and Shigella types. J Bacteriol 52, 461–466. [Google Scholar]
  26. Cohn, F.(1872). Untersuchungen über Bakterien. Beitr Biol Pflanz 1, 127–224 (in German). [Google Scholar]
  27. Collins, M. D.(1994). Isoprenoid quinones. In Chemical Methods in Prokaryotic Systematics, pp. 265–309. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: John Wiley & Sons Ltd.
  28. Collins, M. D., Jones, D., Keddie, R. M., Kroppenstedt, R. M. & Schleifer, K. H.(1983). Classification of some coryneform bacteria in a new genus Aureobacterium. Syst Appl Microbiol 4, 236–252.[CrossRef] [Google Scholar]
  29. Collins, M. D., Brown, J. & Jones, D.(1988).Brachybacterium faecium gen. nov., sp. nov., a coryneform bacterium from poultry deep litter. Int J Syst Bacteriol 38, 45–48.[CrossRef] [Google Scholar]
  30. Collins, M. D., Dorsch, M. & Stackebrandt, E.(1989). Transfer of Pimelobacter tumescens to Terrabacter gen. nov. as Terrabacter tumescens comb. nov. and of Pimelobacter jensenii to Nocardioides as Nocardioides jensenii comb. nov. Int J Syst Bacteriol 39, 1–6.[CrossRef] [Google Scholar]
  31. Collins, M. D., Hutson, R. A., Baverud, V. & Falsen, E.(2000). Characterization of a Rothia-like organism from a mouse: description of Rothia nasimurium sp. nov. and reclassification of Stomatococcus mucilaginosus as Rothia mucilaginosa comb. nov. Int J Syst Evol Microbiol 50, 1247–1251.[CrossRef] [Google Scholar]
  32. Collins, M. D., Lawson, P. A., Labrenz, M., Tindall, B. J., Weiss, N. & Hirsch, P.(2002).Nesterenkonia lacusekhoensis sp. nov., isolated from hypersaline Ekho Lake, East Antarctica, and emended description of the genus Nesterenkonia. Int J Syst Evol Microbiol 52, 1145–1150.[CrossRef] [Google Scholar]
  33. Collins, M. D., Routh, J., Saraswathy, A., Lawson, P. A., Schumann, P., Welinder-Olsson, C. & Falsen, E.(2004).Arsenicicoccus bolidensis gen. nov., sp. nov., a novel actinomycete isolated from contaminated lake sediment. Int J Syst Evol Microbiol 54, 605–608.[CrossRef] [Google Scholar]
  34. Colwell, R. R., Citarella, R. V., Ryman, I. & Chapman, G. B.(1969). Properties of Pseudomonas iodinum. Can J Microbiol 15, 851–857.[CrossRef] [Google Scholar]
  35. Conn, H. J.(1928). A type of bacteria abundant in productive soils, but apparently lacking in certain soils of low productivity. NY Agric Exp Stn Geneva Bull 138, 3–26. [Google Scholar]
  36. Conn, H. J. & Dimmick, I.(1947). Soil bacteria similar in morphology to Mycobacterium and Corynebacterium. J Bacteriol 54, 291–303. [Google Scholar]
  37. Cook, D. M., Henriksen, E. D., Rogers, T. E. & Peterson, J. D.(2008).Klugiella xanthotipulae gen. nov., sp. nov., a novel member of the family Microbacteriaceae. Int J Syst Evol Microbiol 58, 2779–2782.[CrossRef] [Google Scholar]
  38. Cui, X., Schumann, P., Stackebrandt, E., Kroppenstedt, R. M., Pukall, R., Xu, L., Rohde, M. & Jiang, C.(2004).Myceligenerans xiligouense gen. nov., sp. nov., a novel hyphae-forming member of the family Promicromonosporaceae. Int J Syst Evol Microbiol 54, 1287–1293.[CrossRef] [Google Scholar]
  39. Davis, M. J., Gillaspie, A. G., Jr, Vidaver, A. K. & Harris, R. W.(1984).Clavibacter: a new genus containing some phytopathogenic coryneform bacteria, including Clavibacter xyli subsp. xyli sp. nov., subsp. nov. and Clavibacter xyli subsp. cynodontis subsp. nov., pathogens that cause ratoon stunting disease of sugarcane and Bermudagrass stunting disease. Int J Syst Bacteriol 34, 107–117.[CrossRef] [Google Scholar]
  40. Dufossé, L., Mahon, P. & Binet, A.(2001). Assessment of the coloring strength of Brevibacterium linens strains: spectrocolorimetry versus total carotenoid extraction/quantification. J Dairy Sci 84, 354–360.[CrossRef] [Google Scholar]
  41. Endl, J., Seidl, P. H., Fiedler, F. & Schleifer, K. H.(1984). Determination of cell wall teichoic acid structure of staphylococci by rapid chemical and serological screening methods. Arch Microbiol 137, 272–280.[CrossRef] [Google Scholar]
  42. Erikson, D.(1954). Factors promoting cell division in a ‘soft’ mycelial type of Nocardia: Nocardia turbata n. sp. J Gen Microbiol 11, 198–208.[CrossRef] [Google Scholar]
  43. Evtushenko, L. I., Dorofeeva, L. V., Subbotin, S. A., Cole, J. R. & Tiedje, J. M.(2000).Leifsoniapoae gen. nov., sp. nov., isolated from nematode galls on Poa annua, and reclassification of ‘Corynebacteriumaquaticum’ Leifson 1962 as Leifsoniaaquatica (ex Leifson 1962) gen. nov., nom. rev., comb. nov. and Clavibacterxyli Davis et al. 1984 with two subspecies as Leifsoniaxyli (Davis et al. 1984) gen. nov., comb. nov. Int J Syst Evol Microbiol 50, 371–380.[CrossRef] [Google Scholar]
  44. Evtushenko, L. I., Dorofeeva, L., Dobrovolskaya, T., Streshinskaya, G., Subbotin, S. & Tiedje, J.(2001).Agreia bicolorata gen. nov., sp. nov., to accommodate actinobacteria isolated from narrow reed grass infected by the nematode Heteroanguina graminophila. Int J Syst Evol Microbiol 51, 2073–2079.[CrossRef] [Google Scholar]
  45. Evtushenko, L. I., Dorofeeva, L. V., Krausova, V. I., Gavrish, E. Y., Yashina, S. G. & Takeuchi, M.(2002).Okibacterium fritillariae gen. nov., sp. nov., a novel genus of the family Microbacteriaceae. Int J Syst Evol Microbiol 52, 987–993.[CrossRef] [Google Scholar]
  46. Ezaki, T., Hashimoto, Y. & Yabuuchi, E.(1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224–229.[CrossRef] [Google Scholar]
  47. Faller, A., Gotz, F. & Schleifer, K. H.(1980). Cytochrome patterns of staphylococci and micrococci and their taxonomic implications. Zentralbl Bakteriol Parasitenkd Infektionskr Hyg Abt 1 Orig Reihe C 1, 26–39. [Google Scholar]
  48. Fernandez-Garayzabal, J. F., Dominguez, L., Pascual, C., Jones, D. & Collins, M. D.(1995). Phenotypic and phylogenetic characterization of some unknown coryneform bacteria isolated from bovine blood and milk: description of Sanguibacter gen. nov. Lett Appl Microbiol 20, 69–75.[CrossRef] [Google Scholar]
  49. Fiedler, F. & Schäffler, M. J.(1987). Teichoic acids in cell walls of strains of the ‘nicotianae’ group of Arthrobacter: a chemotaxonomic marker. Syst Appl Microbiol 9, 16–21.[CrossRef] [Google Scholar]
  50. Fiedler, F., Schäffler, M. J. & Stackebrandt, E.(1981). Biochemical and nucleic acid hybridisation studies on Brevibacterium linens and related strains. Arch Microbiol 129, 85–93.[CrossRef] [Google Scholar]
  51. Fiedler, F., Seger, J., Schrettenbrunner, A. & Seeliger, H. P. R.(1984). The biochemistry of murein and cell wall teichoic acids in the genus Listeria. Syst Appl Microbiol 5, 360–376.[CrossRef] [Google Scholar]
  52. Flügge, C.(1886).Die Mikroorganismen. Leipzig: Vogel, F. C. W. (in German).
  53. Frank, H., Rettenmeier, A., Weicker, H., Nicholson, G. J. & Bayer, E.(1980). A new gas chromatographic method for determination of amino acid levels in human serum. Clin Chim Acta 105, 201–211.[CrossRef] [Google Scholar]
  54. Gavrish, E. Y., Krauzova, V. I., Potekhina, N. V., Karasev, S. G., Plotnikova, E. G., Altyntseva, O. V., Korosteleva, L. A. & Evtushenko, L. I.(2004). Three new species of brevibacteria, Brevibacterium antiquum sp. nov., Brevibacterium aurantiacum sp. nov., and Brevibacterium permense sp. nov. Microbiology (English translation of Mikrobiologiia) 73, 176–183. [Google Scholar]
  55. Georg, L. K. & Brown, J. M.(1967).Rothia gen. nov., an aerobic genus of the family Actinomycetaceae. Int J Syst Bacteriol 17, 79–88.[CrossRef] [Google Scholar]
  56. Gevers, D., Cohan, F. M., Lawrence, J. G., Spratt, B. G., Coenye, T., Feil, E. J., Stackebrandt, E., de Peer, Y. V., Vandamme, P. & other authors(2005). Re-evaluating prokaryotic species. Nat Rev Microbiol 3, 733–739.[CrossRef] [Google Scholar]
  57. Gledhill, W. E. & Casida, L. E., Jr(1969). Predominant catalase-negative soil bacteria. III. Agromyces, gen. n., microorganisms intermediary to Actinomyces and Nocardia. Appl Microbiol 18, 340–349. [Google Scholar]
  58. Gordon, M. A.(1964). The genus Dermatophilus. J Bacteriol 88, 509–522. [Google Scholar]
  59. Gordon, R. E. & Mihm, J. M.(1957). A comparative study of some strains received as nocardiae. J Bacteriol 73, 15–27. [Google Scholar]
  60. Goris, J., Suzuki, K., De Vos, P., Nakase, T. & Kersters, K.(1998). Evaluation of a microplate DNA-DNA hybridization method compared with the initial renaturation method. Can J Microbiol 44, 1148–1153.[CrossRef] [Google Scholar]
  61. Greene, A. G., Euzéby, J. P., Tindall, B. J. & Patel, B. K. C.(2009). Proposal of Frondihabitans gen. nov. to replace the illegitimate genus name Frondicola Zhang et al. 2007. Int J Syst Evol Microbiol 59, 447–448.[CrossRef] [Google Scholar]
  62. Grimont, P. A. D.(1988). Use of DNA reassociation in bacterial classification. Can J Microbiol 34, 541–546.[CrossRef] [Google Scholar]
  63. Groth, I., Schumann, P., Weiss, N., Martin, K. & Rainey, F. A.(1996).Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46, 234–239.[CrossRef] [Google Scholar]
  64. Groth, I., Schumann, P., Rainey, F. A., Martin, K., Schütze, B. & Augsten, K.(1997a).Bogoriella caseilytica gen. nov., sp. nov., a new alkaliphilic actinomycete from a soda lake in Africa. Int J Syst Bacteriol 47, 788–794.[CrossRef] [Google Scholar]
  65. Groth, I., Schumann, P., Rainey, F. A., Martin, K., Schütze, B. & Augsten, K.(1997b).Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil. Int J Syst Bacteriol 47, 1129–1133.[CrossRef] [Google Scholar]
  66. Groth, I., Schumann, P., Martin, K., Schütze, B., Augsten, K., Kramer, I. & Stackebrandt, E.(1999a).Ornithinicoccus hortensis gen. nov., sp. nov., a soil actinomycete which contains l-ornithine. Int J Syst Bacteriol 49, 1717–1724.[CrossRef] [Google Scholar]
  67. Groth, I., Schumann, P., Schütze, B., Augsten, K., Kramer, I. & Stackebrandt, E.(1999b).Beutenbergia cavernae gen. nov., sp. nov., an l-lysine-containing actinomycete isolated from a cave. Int J Syst Bacteriol 49, 1733–1740.[CrossRef] [Google Scholar]
  68. Groth, I., Schumann, P., Weiss, N., Schütze, B., Augsten, K. & Stackebrandt, E.(2001).Ornithinimicrobium humiphilum gen. nov., sp. nov., a novel soil actinomycete with l-ornithine in the peptidoglycan. Int J Syst Evol Microbiol 51, 81–87. [Google Scholar]
  69. Groth, I., Schumann, P., Schütze, B., Augsten, K. & Stackebrandt, E.(2002).Knoellia sinensis gen. nov., sp. nov. and Knoellia subterranea sp. nov., two novel actinobacteria isolated from a cave. Int J Syst Evol Microbiol 52, 77–84. [Google Scholar]
  70. Gu, Q., Pasciak, M., Luo, H., Gamian, A., Liu, Z. & Huang, Y.(2007).Ruania albidiflava gen. nov., sp. nov., a novel member of the suborder Micrococcineae. Int J Syst Evol Microbiol 57, 809–814.[CrossRef] [Google Scholar]
  71. Gvozdiak, O. R., Schumann, P., Griepenburg, U. & Auling, G.(1998). Polyamine profiles of Gram-positive catalase positive cocci. Syst Appl Microbiol 21, 279–284.[CrossRef] [Google Scholar]
  72. Hamana, K.(1994). Polyamine distribution patterns in aerobic Gram-positive cocci and some radio-resistant bacteria. J Gen Appl Microbiol 40, 181–195.[CrossRef] [Google Scholar]
  73. Hamana, K.(1995). Polyamine distribution patterns in coryneform bacteria and related Gram-positive eubacteria. Annu Rep Coll Med Care Technol Gunma Univ 16, 69–77. [Google Scholar]
  74. Han, S. K., Nedashkovskaya, O. I., Mikhailov, V. V., Kim, S. B. & Bae, K. S.(2003).Salinibacterium amurskyense gen. nov., sp. nov., a novel genus of the family Microbacteriaceae from the marine environment. Int J Syst Evol Microbiol 53, 2061–2066.[CrossRef] [Google Scholar]
  75. Hancock, I. C.(1994). Analysis of cell wall constituents of Gram-positive bacteria. In Chemical Methods in Prokaryotic Systematics, pp. 63–84. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: John Wiley & Sons Ltd.
  76. Hatano, K., Nishii, T. & Kasai, H.(2003). Taxonomic re-evaluation of whorl-forming Streptomyces (formerly Streptoverticillium) species by using phenotypes, DNA-DNA hybridization and sequences of gyrB, and proposal of Streptomyces luteireticuli (ex Katoh and Arai 1957) corrig., sp. nov., nom. rev. Int J Syst Evol Microbiol 53, 1519–1529.[CrossRef] [Google Scholar]
  77. Heikens, E., Fleer, A., Paauw, A., Florijn, A. & Fluit, A. C.(2005). Comparison of genotypic and phenotypic methods for species-level identification of clinical isolates of coagulase-negative staphylococci. J Clin Microbiol 43, 2286–2290.[CrossRef] [Google Scholar]
  78. Hinrikson, H. P., Dutly, F. & Altwegg, M.(2000). Analysis of the actinobacterial insertion in domain III of the 23S rRNA gene of uncultured variants of the bacterium associated with Whipple's disease using broad-range and ‘Tropheryma whippelii’-specific PCR. Int J Syst Evol Microbiol 50, 1007–1011.[CrossRef] [Google Scholar]
  79. Holland, R. D., Wikes, J. G., Rafii, F., Sutherland, J. B., Persons, C. C., Voorhees, K. J. & Lay, J. O. J.(1996). Rapid identification of intact whole bacteria based on spectral patterns using matrix-assisted laser desorption/ionization with time-of-flight mass spectrometry. Rapid Commun Mass Spectrom 10, 1227–1232.[CrossRef] [Google Scholar]
  80. Holt, J. G. & Krieg, N. R.(1994). Enrichment and isolation. In Methods for General and Molecular Bacteriology, pp. 179–215. Edited by P. Gerhart, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
  81. Huß, V. A. R., Festl, H. & Schleifer, K. H.(1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184–192.[CrossRef] [Google Scholar]
  82. Inoue, K. & Komagata, K.(1976). Taxonomic study on obligately psychrophilic bacteria isolated from Antarctica. J Gen Appl Microbiol 22, 165–176.[CrossRef] [Google Scholar]
  83. Ishikawa, T. & Yokota, A.(2006). Reclassification of Arthrobacter duodecadis Lochhead 1958 as Tetrasphaera duodecadis comb. nov. and emended description of the genus Tetrasphaera. Int J Syst Evol Microbiol 56, 1369–1373.[CrossRef] [Google Scholar]
  84. Jensen, H. L.(1934). Studies on saprophytic mycobacteria and corynebacteria. Proc Linn Soc N S W 59, 19–61. [Google Scholar]
  85. Jones, D. & Collins, M. D.(1988). Taxonomic studies on some human cutaneous coryneform bacteria: Description of Dermabacter hominis gen. nov., sp. nov. FEMS Microbiol Lett 51, 51–55.[CrossRef] [Google Scholar]
  86. Jones, D., Watkins, J. & Erikson, S. K.(1973). Taxonomically significant color changes in Brevibacterium linens probably associated with a carotenoid-like pigment. J Gen Microbiol 77, 145–150.[CrossRef] [Google Scholar]
  87. Jung, S. Y., Kim, H. S., Song, J. J., Lee, S. G., Oh, T. K. & Yoon, J. H.(2006).Kribbia dieselivorans gen. nov., sp. nov., a novel member of the family Intrasporangiaceae. Int J Syst Evol Microbiol 56, 2427–2432.[CrossRef] [Google Scholar]
  88. Kageyama, A., Takahashi, Y., Seki, T., Tomoda, H. & Omura, S.(2005).Oryzihumus leptocrescens gen. nov., sp. nov. Int J Syst Evol Microbiol 55, 2555–2559.[CrossRef] [Google Scholar]
  89. Kageyama, A., Takahashi, Y. & Omura, S.(2007).Humihabitans oryzae gen. nov., sp. nov. Int J Syst Evol Microbiol 57, 2163–2166.[CrossRef] [Google Scholar]
  90. Kageyama, A., Haga, T., Kasai, H., Shizuri, Y., Omura, S. & Takahashi, Y.(2008a).Marihabitans asiaticus gen. nov., sp. nov., a meso-diaminopimelic acid containing member of the family Intrasporangiaceae. Int J Syst Evol Microbiol 58, 2429–2432.[CrossRef] [Google Scholar]
  91. Kageyama, A., Matsumoto, A., Omura, S. & Takahashi, Y.(2008b).Humibacillus xanthopallidus gen. nov., sp. nov. Int J Syst Evol Microbiol 58, 1547–1551.[CrossRef] [Google Scholar]
  92. Kalakoutskii, L. V., Kirillova, I. P. & Krassil'nikov, N. A.(1967). A new genus of the Actinomycetales, Intrasporangium gen. nov. J Gen Microbiol 48, 79–85.[CrossRef] [Google Scholar]
  93. Kämpfer, P., Rainey, F., Andersson, M., Nurmiaho Lassila, L., Ulrych, U., Busse, H., Weiss, N., Mikkola, R. & Salkinoja-Salonen, M.(2000).Frigoribacterium faeni gen. nov., sp. nov., a novel psychrophilic genus of the family Microbacteriaceae. Int J Syst Evol Microbiol 50, 355–363.[CrossRef] [Google Scholar]
  94. Katayama, T., Kato, T., Tanaka, M., Douglas, T. A., Brouchkov, A., Fukuda, M., Tomita, F. & Asano, K.(2009).Glaciibacter superstes gen. nov., sp. nov., a novel member of the family Microbacteriaceae isolated from a permafrost ice wedge. Int J Syst Evol Microbiol 59, 482–486.[CrossRef] [Google Scholar]
  95. Kellerman, F. K. & McBeth, I. G.(1912). The fermentation of cellulose. Zentralbl Bakteriol Parasitenkd Infektionskr Hyg Abt II 34, 485–494. [Google Scholar]
  96. Knackmuss, H. J. & Beckman, W.(1973). The structure of nicotine blue from Arthrobacter oxydans. Arch Mikrobacteriol 90, 167–169.[CrossRef] [Google Scholar]
  97. Koch, C., Schumann, P. & Stackebrandt, E.(1995). Reclassification of Micrococcus agilis (Ali-Cohen 1889) to the genus Arthrobacter as Arthrobacter agilis comb. nov. and emendation of the genus Arthrobacter. Int J Syst Bacteriol 45, 837–839.[CrossRef] [Google Scholar]
  98. Komagata, K. & Iizuka, H.(1964). New species of Brevibacterium isolated from rice. (Studies on the microorganisms of cereal grains, Part VII). J Agric Chem Soc Japan 38, 496–502. [Google Scholar]
  99. Komagata, K. & Suzuki, K. I.(1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161–207. [Google Scholar]
  100. Koyama, Y., Yazawa, Y., Yamagishi, S. & Arai, T.(1974). Photochromogensis. I. Photochromogenicity in genus Nocardia, Corynebacterium, Arthrobacter, Brevibacterium, and Flavobacterium. Jpn J Microbiol 18, 49–56.[CrossRef] [Google Scholar]
  101. Krassil'nikov, N. A., Kalakoutskii, L. V. & Kirillova, N. F.(1961). A new genus of ray fungi - Promicromonospora gen. nov. Izv Akad Nauk SSSR (Ser Biol) 1, 107–112. [Google Scholar]
  102. Krubasik, P. & Sadmann, G.(2000). A carotenogenic gene cluster from Brevibacterium linens with novel lycopene cyclase genes involved in the synthesis of aromatic carotenoids. Mol Gen Genet 263, 423–432.[CrossRef] [Google Scholar]
  103. Kuhn, R., Starr, M. P., Kuhn, D. A., Bauer, H. & Knackmuss, H. J.(1965). Indigoidine and other bacterial pigments related to 3,3′-bipyridyl. Arch Mikrobiol 51, 71–84.[CrossRef] [Google Scholar]
  104. Kümmerle, M., Scherer, S. & Seiler, H.(1998). Rapid and reliable identification of fermentative yeasts by Fourier-transform infrared spectroscopy. Appl Environ Microbiol 64, 2207–2214. [Google Scholar]
  105. Kwok, A. Y., Su, S., Reynolds, R., Bay, S., Av-Gay, Y., Dovichi, N. & Chow, A.(1999). Species identification and phylogenetic relationships based on partial HSP60 gene sequences within the genus Staphylococcus. Int J Syst Bacteriol 49, 1181–1192.[CrossRef] [Google Scholar]
  106. Labeda, D. P.(1997). International Committee on Systematic Bacteriology VIIth International Congress of Microbiology and Applied Bacteriology, Minutes of the meetings, 17, 18 and 22 August 1996, Jerusalem, Israel. Int J Syst Bacteriol 47, 597–600.[CrossRef] [Google Scholar]
  107. Labeda, D. P.(2000). International Committee on Systematic Bacteriology IXth International (IUMS) Congress of Bacteriology and Applied Microbiology, Minutes of the meetings, 14 and 17 August 1999, Sydney, Australia. Int J Syst Evol Microbiol 50, 2245–2247.[CrossRef] [Google Scholar]
  108. Lapage, S. P., Sneath, P. H. A., Lessel, E. F., Skerman, V. B. D., Seeliger, H. P. R. & Clark, W. A. (editors)(1992).International Code of Nomenclature of Bacteria (1990 revision). Washington DC: American Society for Microbiology.
  109. La Scola, B., Fenollar, F., Fournier, P., Altwegg, M., Mallet, M. & Raoult, D.(2001). Description of Tropheryma whipplei gen. nov., sp. nov., the Whipple's disease bacillus. Int J Syst Evol Microbiol 51, 1471–1479. [Google Scholar]
  110. Lechevalier, M. P., De Bièvre, C. & Lechevalier, H. P.(1977). Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5, 249–260.[CrossRef] [Google Scholar]
  111. Lee, S. D.(2006).Phycicoccus jejuensis gen. nov., sp. nov., an actinomycete isolated from seaweed. Int J Syst Evol Microbiol 56, 2369–2373.[CrossRef] [Google Scholar]
  112. Lee, S. D.(2007).Labedella gwakjiensis gen. nov., sp. nov., a novel actinomycete of the family Microbacteriaceae. Int J Syst Evol Microbiol 57, 2498–2502.[CrossRef] [Google Scholar]
  113. Lee, S. D. & Lee, D. W.(2007).Lapillicoccus jejuensis gen. nov., sp. nov., a novel actinobacterium of the family Intrasporangiaceae, isolated from stone. Int J Syst Evol Microbiol 57, 2794–2798.[CrossRef] [Google Scholar]
  114. Lee, D. W., Lee, J. M., Seo, J. P., Schumann, P., Kim, S. J. & Lee, S. D.(2008).Phycicola gilvus gen. nov., sp. nov., an actinobacterium isolated from living seaweed. Int J Syst Evol Microbiol 58, 1318–1323.[CrossRef] [Google Scholar]
  115. Leifson, E.(1962). The bacterial flora of distilled and stored water. III: New species of the genera Corynebacterium, Flavobacterium, Spirillum and Pseudomonas. Int Bull Bacteriol Nomencl Taxon 12, 161–170. [Google Scholar]
  116. Li, W. J., Chen, H. H., Xu, P., Zhang, Y. Q., Schumann, P., Tang, S. K., Xu, L. H. & Jiang, C. L.(2004).Yania halotolerans gen. nov., sp. nov., a novel member of the suborder Micrococcineae from saline soil in China. Int J Syst Evol Microbiol 54, 525–531.[CrossRef] [Google Scholar]
  117. Li, W.-J., Schumann, P., Zhang, Y.-Q., Xu, P., Chen, G.-Z., Xu, L.-H., Stackebrandt, E. & Jiang, C.-L.(2005). Proposal of Yaniaceae fam. nov. and Yania flava sp. nov. and emended description of the genus Yania. Int J Syst Evol Microbiol 55, 1933–1938.[CrossRef] [Google Scholar]
  118. Li, W.-J., Xu, P., Schumann, P., Zhang, Y.-Q., Pukall, R., Xu, L.-H., Stackebrandt, E. & Jiang, C.-L.(2007).Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia. Int J Syst Evol Microbiol 57, 1424–1428.[CrossRef] [Google Scholar]
  119. Li, W. J., Zhi, X. Y. & Euzéby, J. P.(2008). Proposal of Yaniellaceae fam. nov., Yaniella gen. nov. and Sinobaca gen. nov. as replacements for the illegitimate prokaryotic names Yaniaceae Li et al. 2005, Yania Li et al. 2004, emend Li et al. 2005, and Sinococcus Li et al. 2006, respectively. Int J Syst Evol Microbiol 58, 525–527.[CrossRef] [Google Scholar]
  120. Lin, Y.-C., Uemori, K., de Briel, D. A., Arunpairojana, V. & Yokota, A.(2004).Zimmermannella helvola gen. nov., sp. nov., Zimmermannella alba sp. nov., Zimmermannella bifida sp. nov., Zimmermannella faecalis sp. nov. and Leucobacter albus sp. nov., novel members of the family Microbacteriaceae. Int J Syst Evol Microbiol 54, 1669–1676.[CrossRef] [Google Scholar]
  121. Liu, W. T., Hanada, S., Marsh, T. L., Kamagata, Y. & Nakamura, K.(2002).Kineosphaera limosa gen. nov., sp. nov., a novel Gram-positive polyhydroxyalkanoate-accumulating coccus isolated from activated sludge. Int J Syst Evol Microbiol 52, 1845–1849.[CrossRef] [Google Scholar]
  122. MacKenzie, S. L.(1984). Amino acids and peptides. In Gas Chromatography/Mass Spectrometry Applications in Microbiology, pp. 157–204. Edited by G. Odham, L. Larsson & P. Mardh: Plenum Publishing Corporation.
  123. MacKenzie, S. L.(1987). Gas chromatographic analysis of amino acids as the N-heptafluorobutyryl isobutyl esters. J Assoc Off Anal Chem 70, 151–160. [Google Scholar]
  124. Maiden, M. C. J., Bygraves, J. A., Feil, E., Morelli, G., Russell, J. E., Urwin, R., Zhang, Q., Zhou, J., Zurth, K. & other authors(1998). Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci U S A 95, 3140–3145.[CrossRef] [Google Scholar]
  125. Manaia, C. M., Nogales, B., Weiss, N. & Nunes, O. C.(2004).Gulosibacter molinativorax gen. nov., sp. nov., a molinate-degrading bacterium, and classification of ‘Brevibacterium helvolum’ DSM 20419 as Pseudoclavibacter helvolus gen. nov., sp. nov. Int J Syst Evol Microbiol 54, 783–789.[CrossRef] [Google Scholar]
  126. Männistö, M. K., Schumann, P., Rainey, F. A., Kämpfer, P., Tsitko, I., Tiirola, M. A. & Salkinoja-Salonen, M. S.(2000).Subtercola boreus gen. nov., sp. nov. and Subtercola frigoramans sp. nov., two new psychrophilic actinobacteria isolated from boreal groundwater. Int J Syst Evol Microbiol 50, 1731–1739. [Google Scholar]
  127. Martel, A., Pasmans, F., Hellebuyck, T., Haesebrouck, F. & Vandamme, P.(2008).Devriesea agamarum gen. nov., sp. nov., a novel actinobacterium associated with dermatitis and septicaemia in agamid lizards. Int J Syst Evol Microbiol 58, 2206–2209.[CrossRef] [Google Scholar]
  128. Martin, K., Schumann, P., Rainey, F. A., Schütze, B. & Groth, I.(1997).Janibacter limosus gen. nov., sp. nov., a new actinomycete with meso-diaminopimelic acid in the cell wall. Int J Syst Bacteriol 47, 529–534.[CrossRef] [Google Scholar]
  129. Maszenan, A. M., Seviour, R. J., Patel, B. K. C., Schumann, P., Burghardt, J., Tokiwa, Y. & Stratton, H. M.(2000). Three isolates of novel polyphosphate-accumulating Gram-positive cocci, obtained from activated sludge, belong to a new genus, Tetrasphaera gen. nov., and description of two new species, Tetrasphaera japonica sp. nov. and Tetrasphaera australiensis sp. nov. Int J Syst Evol Microbiol 50, 593–603.[CrossRef] [Google Scholar]
  130. Matsumoto, A., Yamada, M., Omura, S. & Takahashi, Y.(2008).Microterricola viridarii gen. nov., sp. nov., a new member of the family Microbacteriaceae. Int J Syst Evol Microbiol 58, 1019–1023.[CrossRef] [Google Scholar]
  131. Mesbah, M., Premachandran, U. & Whitman, W. B.(1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159–167.[CrossRef] [Google Scholar]
  132. Metcalfe, G. & Brown, M. E.(1957). Nitrogen fixation by new species of Nocardia. J Gen Microbiol 17, 567–572.[CrossRef] [Google Scholar]
  133. Møller, V.(1955). Simplified tests for some amino acid decarboxylases and for the arginine dihydrolase system. Acta Pathol Microbiol Scand 36, 158–172. [Google Scholar]
  134. Morse, R., O'Hanlon, K. & Collins, M. D.(2002). Phylogenetic, amino acid content and indel analyses of the beta subunit of DNA-dependent RNA polymerase of Gram-positive and Gram-negative bacteria. Int J Syst Evol Microbiol 52, 1477–1484.[CrossRef] [Google Scholar]
  135. Muir, R. E. & Tan, M.-W.(2007).Leucobacter chromiireducens subsp. solipictus subsp. nov., a pigmented bacterium isolated from the nematode Caenorhabditis elegans, and emended description of L. chromiireducens. Int J Syst Evol Microbiol 57, 2770–2776.[CrossRef] [Google Scholar]
  136. Naumova, I. B., Kuznetsov, V. D., Kudrina, K. S. & Bezzubenkova, A. P.(1980). The occurrence of teichoic acids in Streptomyces. Arch Microbiol 126, 71–75.[CrossRef] [Google Scholar]
  137. Naumova, I. B., Shashkov, A. S., Tul'skaya, E. M., Streshinskaya, G. M., Kozlova, Yu. I., Potekhina, N. V., Evtushenko, L. I. & Stackebrandt, E.(2001). Cell wall teichoic acids: structural diversity, species-specificity in the genus Nocardiopsis and chemotaxonomic perspective. FEMS Microbiol Rev 25, 269–284.[CrossRef] [Google Scholar]
  138. Oberreuter, H., Seiler, H. & Scherer, S.(2002). Identification of coryneform bacteria and related taxa by Fourier-transform infrared (FT-IR) spectroscopy. Int J Syst Evol Microbiol 52, 91–100. [Google Scholar]
  139. Oda, M.(1935). Bacteriological studies on water used for brewing saké (part 6). Bacteriological studies on “miyamizu” (8) and (9). Micrococcus and Actinomyces isolated from “miyamizu”. Jozogaku Zashi 13, 1202–1228. [Google Scholar]
  140. Onishi, M.(1949). Studies on the actinomyces isolated from the deeper layer of carious dentine. J Dent Res 6, 273–282. [Google Scholar]
  141. Onishi, H. & Kamekura, M.(1972).Micrococcus halobius sp. n. Int J Syst Bacteriol 22, 233–236.[CrossRef] [Google Scholar]
  142. Orla-Jensen, S.(1919).The Lactic Acid Bacteria. Copenhagen: Host and Son.
  143. Ortiz-Martinez, A., Gonzalez, J. M., Evtushenko, L. I., Jurado, V., Laiz, L. & Groth, I.(2004). Reclassification of Agromyces fucosus subsp. hippuratus as Agromyces hippuratus sp. nov., comb. nov. and emended description of Agromyces fucosus. Int J Syst Evol Microbiol 54, 1553–1556.[CrossRef] [Google Scholar]
  144. Park, Y. H., Suzuki, K., Yim, D. G., Lee, K. C., Kim, E., Yoon, J., Kim, S., Kho, Y. H., Goodfellow, M. & Komagata, K.(1993). Suprageneric classification of peptidoglycan group B actinomycetes by nucleotide sequencing of 5S ribosomal RNA. Antonie van Leeuwenhoek 64, 307–313. [Google Scholar]
  145. Potekhina, N. V., Shashkov, A. S., Evtushenko, L. I., Senchenkova, S. N. & Naumova, I. B.(2003a). A mannitol teichoic acid containing rhamnose and pyruvic acid acetal from the cell wall of Brevibacterium permense VKM Ac-2280. Carbohydr Res 338, 2745–2749.[CrossRef] [Google Scholar]
  146. Potekhina, N. V., Shashkov, A. S., Evtushenko, L. I., Gavrish, E. Yu., Senchenkova, S. N., Stomakin, A. A., Usov, A. I., Naumova, I. B. & Stackebrandt, E.(2003b). A novel mannitol teichoic acid with side phosphate groups of Brevibacterium sp. VKM Ac-2118. Eur J Biochem 270, 4420–4425.[CrossRef] [Google Scholar]
  147. Potekhina, N. V., Evtushenko, L. I., Senchenkova, S. N., Shashkov, A. S. & Naumova, I. B.(2004). Structures of cell wall teichoic acids of Brevibacterium iodinum VKM Ac-2106. Biochemistry (Mosc) 69, 1353–1359.[CrossRef] [Google Scholar]
  148. Potekhina, N. V., Evtushenko, L. I., Senchenkova, S. N. & Shashkov, A. S.(2007). A new polymer of 8,9-Di-O-Glucosylated 2-keto-3-deoxy-D-glycero-D-galacto-nonulosonic acid from a cell wall of Brevibacterium casei VKM Ac-2114T. Russ J Bioorganic Chem 33, 66–72.[CrossRef] [Google Scholar]
  149. Poyart, C., Quesne, G., Boumaila, C. & Trieu-Cuot, P.(2001). Rapid and accurate species-level identification of coagulase-negative staphylococci by using the sodA gene as a target. J Clin Microbiol 39, 4296–4301.[CrossRef] [Google Scholar]
  150. Prauser, H., Lechevalier, M. P. & Lechevalier, H.(1970). Description of Oerskovia gen. n. to harbor Ørskov's motile nocardia. Appl Microbiol 19, 534 [Google Scholar]
  151. Prauser, H., Schumann, P., Rainey, F. A., Kroppenstedt, R. M. & Stackebrandt, E.(1997).Terracoccus luteus gen. nov., sp. nov., an ll-diaminopimelic acid-containing coccoid actinomycete from soil. Int J Syst Bacteriol 47, 1218–1224.[CrossRef] [Google Scholar]
  152. Prévot, S.(1961).Traité de bactériologie systématique. Dunod Paris.
  153. Pribram, E.(1929). A contribution to the classification of microorganisms. J Bacteriol 18, 361–394. [Google Scholar]
  154. Pukall, R.(2006). DNA fingerprinting techniques applied to the identification, taxonomy and community analysis of Prokaryotes. In Molecular Identification, Systematics and Population Structure of Prokaryotes, pp. 52–82. Edited by E. Stackebrandt. Berlin, Heidelberg, New York: Springer Verlag.
  155. Pukall, R., Schumann, P., Schütte, C., Gols, R. & Dicke, M.(2006).Acaricomes phytoseiuli gen. nov., sp. nov., isolated from the predatory mite Phytoseiulus persimilis. Int J Syst Evol Microbiol 56, 465–469.[CrossRef] [Google Scholar]
  156. Qiu, F., Huang, Y., Sun, L., Zhang, X., Liu, Z. & Song, W.(2007).Leifsonia ginsengi sp. nov., isolated from ginseng root. Int J Syst Evol Microbiol 57, 405–408.[CrossRef] [Google Scholar]
  157. Reddy, G. S. N., Prakash, J. S. S., Srinvas, R., Matsumoto, G. I. & Shivaj, S.(2003).Leifsonia rubra sp. nov. and Leifsonia aurea sp. nov., psychrophiles from a pond in Antarctica. Int J Syst Evol Microbiol 53, 977–984.[CrossRef] [Google Scholar]
  158. Richert, K., Brambilla, E. & Stackebrandt, E.(2005). Development of PCR primers specific for the amplification and direct sequencing of gyrB genes from microbacteria, order Actinomycetales. J Microbiol Methods 60, 115–123.[CrossRef] [Google Scholar]
  159. Rivas, R., Sanchez, M., Trujillo, M. E., Zurdo-Pineiro, J. L., Mateos, P. F., Martinez-Molina, E. & Velazquez, E.(2003).Xylanimonas cellulosilytica gen. nov., sp. nov., a xylanolytic bacterium isolated from a decayed tree (Ulmus nigra). Int J Syst Evol Microbiol 53, 99–103.[CrossRef] [Google Scholar]
  160. Rivas, R., Trujillo, M. E., Schumann, P., Kroppenstedt, R. M., Sanchez, M., Mateos, P. F., Martinez-Molina, E. & Velazquez, E.(2004).Xylanibacterium ulmi gen. nov., sp. nov., a novel xylanolytic member of the family Promicromonosporaceae. Int J Syst Evol Microbiol 54, 557–561.[CrossRef] [Google Scholar]
  161. Rocourt, J., Wehmeyer, U. & Stackebrandt, E.(1987). Transfer of Listeria denitrificans into a new genus Jonesia gen. nov. as Jonesia denitrificans comb. nov. Int J Syst Bacteriol 37, 266–270.[CrossRef] [Google Scholar]
  162. Ryu, E.(1938). On the Gram-differentiation of bacteria by the simplest method. J Jpn Soc Vet Sci 17, 58–63.[CrossRef] [Google Scholar]
  163. Saddler, G. S., Tavecchia, P., Lociuro, S., Zanol, M., Colombo, L. & Selva, E.(1991). Analysis of madurose and other actinomycete whole cell sugars by gas chromatography. J Microbiol Methods 14, 185–191.[CrossRef] [Google Scholar]
  164. Sanders, J. E. & Fryer, J. L.(1980).Renibacterium salmoninarum gen. nov., sp. nov., the causative agent of bacterial kidney disease in salmonid fishes. Int J Syst Bacteriol 30, 496–502.[CrossRef] [Google Scholar]
  165. Sasaki, J., Chijimatsu, M. & Suzuki, K.(1998). Taxonomic significance of 2,4-diaminobutyric acid isomers in the cell wall peptidoglycan of actinomycetes and reclassification of Clavibacter toxicus as Rathayibacter toxicus comb. nov. Int J Syst Bacteriol 48, 403–410.[CrossRef] [Google Scholar]
  166. Scherer, P. & Kneifel, H.(1983). Distribution of polyamines in methanogenic bacteria. J Bacteriol 154, 1315–1322. [Google Scholar]
  167. Schippers-Lammertse, A. F., Muijsers, A. O. & Klatser-Oedekerk, K. B.(1963).Arthrobacter polychromogenes, its pigments and a bacteriophage of this species. Antonie van Leeuwenhoek 29, 1–15.[CrossRef] [Google Scholar]
  168. Schleifer, K. H.(1985). Analysis of the chemical composition and primary structure of murein. Methods Microbiol 18, 123–156. [Google Scholar]
  169. Schleifer, K. H. & Kandler, O.(1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407–477. [Google Scholar]
  170. Schroeter, J.(1872). Über einige durch Bakterien gebildete Pigmente. Beitr Biol Pflanz 1, 109–126 (in German). [Google Scholar]
  171. Schubert, K., Ludwig, W., Springer, N., Kroppenstedt, R., Accolas, J. & Fiedler, F.(1996). Two coryneform bacteria isolated from the surface of French Gruyere and Beaufort cheeses are new species of the genus Brachybacterium: Brachybacterium alimentarium sp. nov. and Brachybacterium tyrofermentans sp. nov. Int J Syst Bacteriol 46, 81–87.[CrossRef] [Google Scholar]
  172. Schumann, P. & Prauser, H.(1995). Minimal standards for taxa related to Arthrobacter and Microbacterium. In Proceedings of the Ninth International Symposium on the Biology of Actinomycetes. Part II. Edited by V. G. Debabov, Y. V. Dudnik & V. N. Danilenko. New York: Allerton Press Inc.
  173. Schumann, P., Weiss, N. & Stackebrandt, E.(2001). Reclassification of Cellulomonas cellulans (Stackebrandt and Keddie 1986) as Cellulosimicrobium cellulans gen. nov., comb. nov. Int J Syst Evol Microbiol 51, 1007–1010.[CrossRef] [Google Scholar]
  174. Schumann, P., Behrendt, U., Ulrich, A. & Suzuki, K.(2003). Reclassification of Subtercolapratensis Behrendt et al. 2002 as Agreia pratensis comb. nov. Int J Syst Evol Microbiol 53, 2041–2044.[CrossRef] [Google Scholar]
  175. Shashkov, A. S., Potekhina, N. V., Evtushenko, L. I. & Naumova, I. B.(2004). Cell wall teichoic acids of two Brevibacterium strains. Biochemistry (Mosc) 69, 658–664.[CrossRef] [Google Scholar]
  176. Sheridan, P. P., Loveland-Curtze, J., Miteva, V. I. & Brenchley, J. E.(2003).Rhodoglobus vestalii gen. nov., sp. nov., a novel psychrophilic organism isolated from an Antarctic Dry Valley lake. Int J Syst Evol Microbiol 53, 985–994.[CrossRef] [Google Scholar]
  177. Shirling, E. B. & Gottlieb, D.(1966). Methods for the characterization of Streptomycetes species. Int J Syst Bacteriol 16, 313–340.[CrossRef] [Google Scholar]
  178. Skerman, V. B. D., McGowan, V. & Sneath, P. H. A. (editors) 1980). Approved lists of bacterial names. Int J Syst Bacteriol 30, 225–420.[CrossRef] [Google Scholar]
  179. Smibert, R. M. & Krieg, N. R.(1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607–654. Edited by P. Gerhart, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
  180. Smith, E. F.(1910). A new tomato disease of economic importance. Science 31, 794–796. [Google Scholar]
  181. Smith, E. F.(1913). A new type of bacterial disease. Science 38, 926 [Google Scholar]
  182. Sneath, P. H. A., Mair, N. A., Sharpe, M. E. & Holt, J. G.(1986).Bergey's Manual of Systematic Bacteriology, vol. 2. Baltimore, MD: Williams and Wilkins.
  183. Sorokin, D. Yu.(2005). Is there a limit for high-pH life? Int J Syst Evol Microbiol 55, 1405–1406.[CrossRef] [Google Scholar]
  184. Stackebrandt, E.(2002). From species definition to species concept: population genetics is going to influence the systematics of Prokaryotes. WFCC Newsl35, http://www.wfcc.info/NEWSLETTER/newsletter35/a1.pdf
  185. Stackebrandt, E. & Goebel, B. M.(1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846–849.[CrossRef] [Google Scholar]
  186. Stackebrandt, E. & Prauser, H.(1991). The family Cellulomonadaceae. In The Prokaryotes, pp. 1323–1345. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer Verlag.
  187. Stackebrandt, E. & Schumann, P.(2000). Description of Bogoriellaceae fam. nov., Dermacoccaceae fam. nov., Rarobacteraceae fam. nov. and Sanguibacteraceae fam. nov. and emendation of some families of the suborder Micrococcineae. Int J Syst Evol Microbiol 50, 1279–1285.[CrossRef] [Google Scholar]
  188. Stackebrandt, E. & Schumann, P.(2004). Reclassification of Promicromonosporapachnodae Cazemier et al. 2004 as Xylanimicrobiumpachnodae gen. nov., comb. nov. Int J Syst Evol Microbiol 54, 1383–1386.[CrossRef] [Google Scholar]
  189. Stackebrandt, E. & Schumann, P.(2006). Introduction to the taxonomy of actinobacteria. In The Prokaryotes. A Handbook on the Biology of Bacteria, 3rd edn, vol. 3, pp. 297–321. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer-Verlag.
  190. Stackebrandt, E., Koch, C., Gvozdiak, O. & Schumann, P.(1995). Taxonomic dissection of the genus Micrococcus: Kocuria gen. nov., Nesterenkonia gen. nov., Kytococcus gen. nov., Dermacoccus gen. nov., and Micrococcus Cohn 1872 gen. emend. Int J Syst Bacteriol 45, 682–692.[CrossRef] [Google Scholar]
  191. Stackebrandt, E., Rainey, F. & Ward-Rainey, N.(1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479–491.[CrossRef] [Google Scholar]
  192. Stackebrandt, E., Breymann, S., Steiner, U., Prauser, H. N. W. & Schumann, P.(2002a). Re-evaluation of the status of the genus Oerskovia, reclassification of Promicromonospora enterophila (Jáger et al. 1983) as Oerskovia enterophila comb. nov. and description of Oerskovia jenensis sp. nov. and Oerskovia paurometabola sp. nov. Int J Syst Evol Microbiol 52, 1105–1111.[CrossRef] [Google Scholar]
  193. Stackebrandt, E., Frederiksen, W., Garrity, G. M., Grimont, P., Kämpfer, P., Maiden, M., Nesme, X., Rossello-Mora, R., Swings, J. & other authors(2002b). Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52, 1043–1047.[CrossRef] [Google Scholar]
  194. Stackebrandt, E., Schumann, P. & Cui, X.-L.(2004). Reclassification of Cellulosimicrobiumvariabile Bakalidou et al. 2002 as Isoptericola variabilis gen. nov., comb. nov. Int J Syst Evol Microbiol 54, 685–688.[CrossRef] [Google Scholar]
  195. Stackebrandt, E., Päuker, O. & Erhard, M.(2005). Grouping myxococci (Corallococcus) strains by matrix-assisted laser desorption ionization time-of-flight (MALDI TOF) mass spectrometry: Comparison with gene sequence phylogenies. Curr Microbiol 50, 71–77.[CrossRef] [Google Scholar]
  196. Starr, M. P.(1958). The blue pigment of Corynebacterium indisiosum. Arch Mikrobiol 30, 325–334.[CrossRef] [Google Scholar]
  197. Starr, M. P. & Saperstein, S.(1953). Thiamine and the carotenoid pigments of Corynebacterium poinsettiae. Arch Biochem Biophys 43, 157–168.[CrossRef] [Google Scholar]
  198. Streshinskaya, G. M., Shashkov, A. S., Usov, A. I., Evtushenko, L. I. & Naumova, I. B.(2002). Cell wall teichoic acids of actinomycetes of three genera of the order actinomycetales. Biochemistry (Mosc) 67, 778–785.[CrossRef] [Google Scholar]
  199. Suzuki, K. & Komagata, K.(1983). Taxonomic significance of cellular fatty acid composition in some coryneform bacteria. Int J Syst Bacteriol 33, 188–200.[CrossRef] [Google Scholar]
  200. Suzuki, K., Sasaki, J., Uramoto, M., Nakase, T. & Komagata, K.(1997).Cryobacterium psychrophilum gen. nov., sp. nov., nom. rev., comb. nov., an obligately psychrophilic actinomycete to accommodate “Curtobacterium psychrophilum” Inoue and Komagata 1976. Int J Syst Bacteriol 47, 474–478.[CrossRef] [Google Scholar]
  201. Takeuchi, M. & Hatano, K.(1998). Union of the genera Microbacterium Orla-Jensen and Aureobacterium Collins et al. in a redefined genus Microbacterium. Int J Syst Bacteriol 48, 739–747.[CrossRef] [Google Scholar]
  202. Takeuchi, M. & Yokota, A.(1989). Cell wall polysaccharides in coryneform bacteria. J Gen Appl Microbiol 35, 233–253.[CrossRef] [Google Scholar]
  203. Takeuchi, M., Weiss, N., Schumann, P. & Yokota, A.(1996).Leucobacter komagatae gen. nov., sp. nov., a new aerobic gram-positive, nonsporulating rod with 2,4-diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46, 967–971.[CrossRef] [Google Scholar]
  204. Tamaoka, J. & Komagata, K.(1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125–128.[CrossRef] [Google Scholar]
  205. Tanaka, N., Uchimura, T. & Komagata, K.(2001). The formation and structures of cystites of Arthrobacter ureafaciens NRIC 0157T induced by antibiotics. J Gen Appl Microbiol 47, 85–97.[CrossRef] [Google Scholar]
  206. Tiago, I., Pires, C., Mendes, V., Morais, P. V., da Costa, M. & Verissimo, A.(2005).Microcella putealis gen. nov., sp. nov., a gram-positive alkaliphilic bacterium isolated from a nonsaline alkaline groundwater. Syst Appl Microbiol 28, 479–487.[CrossRef] [Google Scholar]
  207. Tiago, I., Morais, P. V., da Costa, M. S. & Verissimo, A.(2006).Microcella alkaliphila sp. nov., a novel member of the family Microbacteriaceae isolated from a non-saline alkaline groundwater, and emended description of the genus Microcella. Int J Syst Evol Microbiol 56, 2313–2316.[CrossRef] [Google Scholar]
  208. Tindall, B. J.(1990). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199–202.[CrossRef] [Google Scholar]
  209. Tindall, B. J.(1999). Proposal to change the Rule governing the designation of type strains deposited under culture collection numbers allocated for patent purposes. Int J Syst Bacteriol 49, 1317–1319.[CrossRef] [Google Scholar]
  210. Tindall, B. J.(2008). Confirmation of deposit, but confirmation of what? Int J Syst Evol Microbiol 58, 1785–1787.[CrossRef] [Google Scholar]
  211. Tindall, B. J. & Garrity, G. M.(2008). Proposals to clarify how type strains are deposited and made available to the scientific community for the purpose of systematic research. Int J Syst Evol Microbiol 58, 1987–1990.[CrossRef] [Google Scholar]
  212. Tindall, B. J., Kämpfer, P., Euzéby, J. P. & Oren, A.(2006). Valid publication of names of prokaryotes according to the rules of nomenclature: past history and current practice. Int J Syst Evol Microbiol 56, 2715–2720.[CrossRef] [Google Scholar]
  213. Trutko, S. M., Evtushenko, L. I., Gavrish, E. Yu., Dorofeeva, L. V., Shlyapnikov, M. G. & Akimenko, V. K.(2003). Terminal oxidases in different genera of the family Microbacteriaceae. Mikrobiologiia 72, 301–307. [Google Scholar]
  214. Trutko, S. M., Dorofeeva, L. V., Evtushenko, L. I., Ostrovskii, D. N., Hintz, M., Wiesner, J., Jomaa, H., Baskunov, B. P. & Akimenko, V. K.(2005). Isoprenoid pigments in representatives of the family Microbacteriaceae. Microbiology (English translation of Mikrobiologiia) 74, 284–289.[CrossRef] [Google Scholar]
  215. Tsukamoto, T., Takeuchi, M., Shida, O., Murata, H. & Shirata, A.(2001). Proposal of Mycetocola gen. nov. in the family Microbacteriaceae and three new species, Mycetocola saprophilus sp. nov., Mycetocola tolaasinivorans sp. nov. and Mycetocola lacteus sp. nov., isolated from cultivated mushroom, Pleurotus ostreatus. Int J Syst Evol Microbiol 51, 937–944.[CrossRef] [Google Scholar]
  216. Turner, J. M. & Messenger, A. J.(1986). Occurrence, biochemistry and physiology of phenazine pigment production. Adv Microb Physiol 27, 211–275. [Google Scholar]
  217. Uchida, K. & Aida, K.(1984). An improved method for the glycolate test for simple identification of the acyl type of bacterial cell walls. J Gen Appl Microbiol 30, 131–134.[CrossRef] [Google Scholar]
  218. Uchida, K., Kudo, T., Suzuki, K. & Nakase, T.(1999). A new rapid method of glycolate test by diethyl ether extraction, which is applicable to a small amount of bacterial cells of less than one milligram. J Gen Appl Microbiol 45, 49–56.[CrossRef] [Google Scholar]
  219. Unden, G.(1999). Aerobic respiration and regulation of aerobic/anaerobic metabolism. In Biology of the Prokaryotes, pp. 261–277. Edited by J. W. Lengeler, G. Drews & H. G. Schlegel. Stuttgart: Georg Tieme Verlag.
  220. Vandamme, P., Pot, B., Gillis, M., De Vos, P., Kersters, K. & Swings, J.(1996). Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiol Rev 60, 407–438. [Google Scholar]
  221. Van Saceghem, R.(1915). Dermatose contagieuse (impetigo contagieux). Bull Soc Pathol Exot 8, 354–359. [Google Scholar]
  222. Vargha, M., Takats, Z., Konopka, A. & Nakatsu, C. H.(2006). Optimization of MALDI-TOF MS for strain level differentiation of Arthrobacter isolates. J Microbiol Methods 66, 399–409.[CrossRef] [Google Scholar]
  223. Vaz-Moreira, I., Nobre, M. F., Ferreira, A. C., Schumann, P., Nunes, O. C. & Manaia, C. M.(2008).Humibacter albus gen. nov., sp. nov., isolated from sewage sludge compost. Int J Syst Evol Microbiol 58, 1014–1018.[CrossRef] [Google Scholar]
  224. Vidaver, A. K. & Davis, M. J.(1988). Coryneform plant pathogens. In Laboratory Guide for Identification of Plant Pathogenic Bacteria, 2nd edn, pp. 104–113. Edited by N. W. Schaad. St. Paul, MN: APS press.
  225. von Wintzingerode, F., Göbel, U. B., Siddiqui, R. A., Rosick, U., Schumann, P., Frühling, A., Rohde, M., Pukall, R. & Stackebrandt, E.(2001).Salana multivorans gen. nov., sp. nov., a novel actinobacterium isolated from an anaerobic bioreactor and capable of selenate reduction. Int J Syst Evol Microbiol 51, 1653–1661.[CrossRef] [Google Scholar]
  226. Ward, N. L., Rainey, F. A., Hedlund, B. P., Staley, J. T., Ludwig, W. & Stackebrandt, E.(2000). Comparative phylogenetic analyses of members of the order Planctomycetales and the division Verrucomicrobia: 23S rRNA gene sequence analysis supports the 16S rRNA gene sequence-derived phylogeny. Int J Syst Evol Microbiol 50, 1965–1972.[CrossRef] [Google Scholar]
  227. Weeks, O. B.(1981). Preliminary studies of the pigments of Flavobacterium breve NCTC 11099 and Flavobacterium odoratum NCTC 11036. In The Flavobacterium-Cytophaga Group, pp. 108–114. Edited by H. Reichenbach & O. B. Weeks. Weinheim: Gesellschaft fur Biotechnologische Forschung.
  228. Whiley, R. A. & Kilian, M.(2003). International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of staphylococci and streptococci: Minutes of the closed meeting, 31 July 2002, Paris, France. Int J Syst Evol Microbiol 53, 915–917.[CrossRef] [Google Scholar]
  229. Wiegel, J.(1981). Distinction between the Gram reaction and the Gram type of bacteria. Int J Syst Bacteriol 31, 88[CrossRef] [Google Scholar]
  230. Wieser, M., Denner, E. B., Kämpfer, P., Schumann, P., Tindall, B., Steiner, U., Vybiral, D., Lubitz, W., Maszenan, A. M. & other authors(2002). Emended descriptions of the genus Micrococcus, Micrococcus luteus (Cohn 1872) and Micrococcus lylae (Kloos et al. 1974). Int J Syst Evol Microbiol 52, 629–637. [Google Scholar]
  231. Wolff, M.(1910). Über eine neue Krankheit der Raupe von Bupalus piniarius L. Mitt K Wilh Landw Bromberg 3, 69–92 (in German). [Google Scholar]
  232. Yamada, K. & Komagata, K.(1972). Taxonomic studies on coryneform bacteria. V. Classification of coryneform bacteria. J Gen Appl Microbiol 18, 417–431.[CrossRef] [Google Scholar]
  233. Yamamoto, N., Sato, S., Saito, K., Hasuo, T., Tadenuma, M., Suzuki, K., Tamaoka, J. & Komagata, K.(1988).Rarobacter faecitabidus gen. nov., sp. nov., a yeast-lysing coryneform bacterium. Int J Syst Bacteriol 38, 7–11.[CrossRef] [Google Scholar]
  234. Yi, H., Schumann, P., Sohn, K. & Chun, J.(2004).Serinicoccus marinus gen. nov., sp. nov., a novel actinomycete with l-ornithine and l-serine in the peptidoglycan. Int J Syst Evol Microbiol 54, 1585–1589.[CrossRef] [Google Scholar]
  235. Yi, H., Schumann, P. & Chun, J.(2007).Demequinaaestuarii gen. nov., sp. nov., a novel actinomycete of the suborder Micrococcineae, and reclassification of Cellulomonasfermentans Bagnara et al. 1985 as Actinotaleafermentans gen. nov., comb. nov. Int J Syst Evol Microbiol 57, 151–156.[CrossRef] [Google Scholar]
  236. Yoon, J. H., Kang, S. J., Schumann, P. & Oh, T. K.(2006).Yonghaparkia alkaliphila gen. nov., sp. nov., a novel member of the family Microbacteriaceae isolated from an alkaline soil. Int J Syst Evol Microbiol 56, 2415–2420.[CrossRef] [Google Scholar]
  237. Zgurskaya, H. I., Evtushenko, L. I., Akimov, V. N., Voyevoda, H. V., Dobrovolskaya, T. G., Lysak, L. V. & Kalakoutskii, L. V.(1992). Emended description of the genus Agromyces and description of Agromyces cerinus subsp. cerinus sp. nov., subsp. nov., Agromyces cerinus subsp. nitratus sp. nov., subsp. nov., Agromyces fucosus subsp. fucosus sp. nov., subsp. nov., Agromyces fucosus subsp. hippuratus sp. nov., subsp. nov. Int J Syst Bacteriol 42, 635–641.[CrossRef] [Google Scholar]
  238. Zgurskaya, H. I., Evtushenko, L. I., Akimov, V. N. & Kalakoutskii, L. V.(1993).Rathayibacter gen. nov., including the species Rathayibacter rathayi comb. nov., Rathayibacter tritici comb. nov., Rathayibacter iranicus comb. nov., and six strains from annual grasses. Int J Syst Bacteriol 43, 143–149.[CrossRef] [Google Scholar]
  239. Zhang, Y. Q., Schumann, P., Yu, L. Y., Liu, H. Y., Xu, L. H., Stackebrandt, E., Jiang, C. L. & Li, W. J.(2007a).Zhihengliuella halotolerans gen. nov., sp. nov., a novel member of the family Micrococcaceae. Int J Syst Evol Microbiol 57, 1018–1023.[CrossRef] [Google Scholar]
  240. Zhang, L., Xu, Z. & Patel, B. K. C.(2007b).Frondicola australicus gen. nov., sp. nov., isolated from decaying leaf litter from a pine forest. Int J Syst Evol Microbiol 57, 1177–1182.[CrossRef] [Google Scholar]
  241. Zhi, X.-Y., Li, W.-J. & Stackebrandt, E.(2009). An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa. Int J Syst Evol Microbiol 59, 589–608.[CrossRef] [Google Scholar]
  242. Ziemke, F., Höfle, M. G., Lalucat, J. & Rosselló-Mora, R.(1998). Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48, 179–186.[CrossRef] [Google Scholar]
  243. Zlamala, C., Schumann, P., Kämpfer, P., Rossello-Mora, R., Lubitz, W. & Busse, H. J.(2002a).Agrococcus baldri sp. nov., isolated from the air in the ‘Virgilkapelle’ in Vienna. Int J Syst Evol Microbiol 52, 1211–1216.[CrossRef] [Google Scholar]
  244. Zlamala, C., Schumann, P., Kämpfer, P., Valens, M., Rossello-Mora, R., Lubitz, W. & Busse, H. J.(2002b).Microbacterium aerolatum sp. nov., isolated from the air in the ‘Virgilkapelle’ in Vienna. Int J Syst Evol Microbiol 52, 1229–1234.[CrossRef] [Google Scholar]
  245. ZoBell, C. E. & Upham, C.(1944). A list of marine bacteria including descriptions of sixty new species. Bull Scripps Inst Oceanogr Univ Calif Tech Ser 5, 239–292. [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.012971-0
Loading
/content/journal/ijsem/10.1099/ijs.0.012971-0
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error