1887

Abstract

A Gram-negative, motile, rod-shaped bacterium, strain S4, was isolated from coastal sediment collected off Xiamen, China. The physiological and biochemical features of strain S4, determined using the API 20NE, API ZYM and Biolog GN2 systems, were similar to those of members of the genus . Phylogenetic analyses based on 16S rRNA and gene sequences placed strain S4 in the genus , and it was most closely related to and related species. DNA–DNA hybridization demonstrated only 11.9–30.4 % relatedness between S4 and the type strains of related species. On the basis of phylogenetic and phenotypic characteristics, strain S4 is classified in the genus as a representative of a distinct novel species, for which the name sp. nov. is proposed. The type strain is S4 (=CCTCC M 209017 =JCM 16212).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.013300-0
2010-07-01
2024-05-09
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/60/7/1585.html?itemId=/content/journal/ijsem/10.1099/ijs.0.013300-0&mimeType=html&fmt=ahah

References

  1. Bozal N., Montes M. J., Tudela E., Jiménez F., Guinea J. 2002; Shewanella frigidimarina and Shewanella livingstonensis sp. nov. isolated from Antarctic coastal areas. Int J Syst Evol Microbiol 52:195–205
    [Google Scholar]
  2. Coates J. D., Bhupathiraju V. K., Achenbach L. A., McInerney M. J., Lovley D. R. 2001; Geobacter hydrogenophilus , Geobacter chapellei and Geobacter grbiciae , three new, strictly anaerobic, dissimilatory Fe(III)-reducers. Int J Syst Evol Microbiol 51:581–588
    [Google Scholar]
  3. Ezaki T., Hashimoto Y., Yabuuchi E. 1989; Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224–229 [CrossRef]
    [Google Scholar]
  4. Fonnesbech Vogel B., Venkateswaran K., Satomi M., Gram L. 2005; Identification of Shewanella baltica as the most important H2S-producing species during iced storage of Danish marine fish. Appl Environ Microbiol 71:6689–6697 [CrossRef]
    [Google Scholar]
  5. Hau H. H., Gralnick J. A. 2007; Ecology and biotechnology of the genus Shewanella . Annu Rev Microbiol 61:237–258 [CrossRef]
    [Google Scholar]
  6. MacDonell M. T., Colwell R. R. 1985; Phylogeny of the Vibrionaceae , and recommendation for two new genera, Listonella and Shewanella . Syst Appl Microbiol 6:171–182 [CrossRef]
    [Google Scholar]
  7. Makemson J. C., Fulayfil N. R., Landry W., Van Ert L. M., Wimpee C. F., Widder E. A., Case J. F. 1997; Shewanella woodyi sp. nov., an exclusively respiratory luminous bacterium isolated from the Alboran Sea. Int J Syst Bacteriol 47:1034–1039 [CrossRef]
    [Google Scholar]
  8. Moser D. P., Nealson K. H. 1996; Growth of the facultative anaerobe Shewanella putrefaciens by elemental sulfur reduction. Appl Environ Microbiol 62:2100–2105
    [Google Scholar]
  9. Myers C. R., Nealson K. H. 1990; Respiration-linked proton translocation coupled to anaerobic reduction of manganese(IV) and iron(III) in Shewanella putrefaciens MR-1. J Bacteriol 172:6232–6238
    [Google Scholar]
  10. Nealson K. H., Scott J. 2006; Ecophysiology of the genus Shewanella . In The Prokaryotes: a Handbook on the Biology of Bacteria . , 3rd edn. vol 6 pp 1133–1151 Edited by Dworkin M., Falkow S., Rosenberg E., Schleifer K. H., Stackebrandt E. New York: Springer;
  11. Nozue H., Hayashi T., Hashimoto Y., Ezaki T., Hamasaki K., Ohwada K., Terawaki Y. 1992; Isolation and characterization of Shewanella alga from human clinical specimens and emendation of the description of S. alga Simidu et al., 1990, 335.. Int J Syst Bacteriol 42:628–634 [CrossRef]
    [Google Scholar]
  12. Satomi M., Oikawa H., Yano Y. 2003; Shewanella marinintestina sp. nov., Shewanella schlegeliana sp. nov. and Shewanella sairae sp. nov., novel eicosapentaenoic-acid-producing marine bacteria isolated from sea-animal intestines. Int J Syst Evol Microbiol 53:491–499 [CrossRef]
    [Google Scholar]
  13. Satomi M., Fonnesbech Vogel B., Gram L., Venkateswaran K. 2006; Shewanella hafniensis sp. nov. and Shewanella morhuae sp. nov., isolated from marine fish of the Baltic Sea. Int J Syst Evol Microbiol 56:243–249 [CrossRef]
    [Google Scholar]
  14. Satomi M., Fonnesbech Vogel B., Venkateswaran K., Gram L. 2007; Description of Shewanella glacialipiscicola sp. nov. and Shewanella algidipiscicola sp. nov., isolated from marine fish of the Danish Baltic Sea, and proposal that Shewanella affinis is a later heterotypic synonym of Shewanella colwelliana . Int J Syst Evol Microbiol 57:347–352 [CrossRef]
    [Google Scholar]
  15. Smibert R. M., Krieg N. R. 1994; Phenotypic characterization. In Methods for General and Molecular Bacteriology . pp 607–654 Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. Washington, DC: American Society for Microbiology;
  16. Stackebrandt E., Goebel B. M. 1994; Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846–849 [CrossRef]
    [Google Scholar]
  17. Svetashev V. I., Vysotskii M. V., Ivanova E. P., Mikhailov V. V. 1995; Cellular fatty acids of Alteromonas species. Syst Appl Microbiol 18:37–43 [CrossRef]
    [Google Scholar]
  18. Tamaoka J., Komagata K. 1984; Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25:125–128 [CrossRef]
    [Google Scholar]
  19. Tamura K., Dudley J., Nei M., Kumar S. 2007; mega4: molecular evolutionary genetics analysis (mega) software version 4.0. Mol Biol Evol 24:1596–1599 [CrossRef]
    [Google Scholar]
  20. Toffin L., Bidault A., Pignet P., Tindall B. J., Slobodkin A., Kato C., Prieur D. 2004; Shewanella profunda sp. nov., isolated from deep marine sediment of the Nankai Trough. Int J Syst Evol Microbiol 54:1943–1949 [CrossRef]
    [Google Scholar]
  21. Venkateswaran K., Moser D. P., Dollhopf M. E., Lies D. P., Saffarini D. A., MacGregor B. J., Ringelberg D. B., White D. C., Nishijima M. other authors 1999; Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov. Int J Syst Bacteriol 49:705–724 [CrossRef]
    [Google Scholar]
  22. Xu M., Guo J., Cen Y., Zhong X., Cao W., Sun G. 2005; Shewanella decolorationis sp. nov., a dye-decolorizing bacterium isolated from activated sludge of a waste-water treatment plant. Int J Syst Evol Microbiol 55:363–368 [CrossRef]
    [Google Scholar]
  23. Yamamoto S., Harayama S. 1995; PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains. Appl Environ Microbiol 61:1104–1109
    [Google Scholar]
  24. Ziemke F., Höfle M. G., Lalucat J., Rosselló-Mora R. 1998; Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48:179–186 [CrossRef]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.013300-0
Loading
/content/journal/ijsem/10.1099/ijs.0.013300-0
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error