1887

Abstract

The species ( Celmer 1977) Henssen 1987 was proposed, based on morphological and chemotaxonomic observations, for a strain originally described as ‘’ Celmer 1977 in a US patent. In the course of a phylogenetic study of the taxa with validly published names within the suborder based on 16S rRNA gene sequences, it became apparent that this species was misplaced in the genus . After careful evaluation of the phylogeny, morphology, chemotaxonomy and physiology of the type strain, it was concluded that this strain represents a species of the genus that is unable to produce motile spores. The description of the genus is therefore emended to accommodate species that do not produce motile spores, and it is proposed that be transferred to the genus as comb. nov. The type strain is NRRL B-16697 =ATCC 31181 =DSM 43855 =JCM 3276 =NBRC 14105 =VKM Ac-1419.

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.016568-0
2010-06-01
2024-03-28
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/60/6/1444.html?itemId=/content/journal/ijsem/10.1099/ijs.0.016568-0&mimeType=html&fmt=ahah

References

  1. Celmer W. D., Cullen W. P., Moppett C. E., Routien J. B., Shibakawa R., Tone J. 1977; Antibiotics produced by species of Pseudonocardia . US Patent 4,031206
  2. de Boer L., Dijkhuizen L., Grobben G., Goodfellow M., Stackebrandt E., Parlett J. H., Whitehead D., Witt D. 1990; Amycolatopsis methanolica sp. nov., a facultatively methylotrophic actinomycete. Int J Syst Bacteriol 40:194–204 [CrossRef]
    [Google Scholar]
  3. Everest G. J., Meyers P. R. 2009; The use of gyrB sequence analysis in the phylogeny of the genus Amycolatopsis . Antonie van Leeuwenhoek 95:1–11
    [Google Scholar]
  4. Felsenstein J. 1993 phylip (phylogeny inference package) version 3.5.1. Distributed by the author. Department of Genome Sciences University of Washington; Seattle, USA:
    [Google Scholar]
  5. Goodfellow M., Brown A. B., Cai J., Chun J., Collins M. D. 1997; Amycolatopsis japonicum sp. nov., an actinomycete producing (S,S)-N,N′-ethylenediaminedisuccinic acid. Syst Appl Microbiol 20:78–84 [CrossRef]
    [Google Scholar]
  6. Goodfellow M., Kim S. B., Minnikin D. E., Whitehead D., Zhou Z. H., Mattinson-Rose A. D. 2001; Amycolatopsis sacchari sp. nov., a moderately thermophilic actinomycete isolated from vegetable matter. Int J Syst Evol Microbiol 51:187–193
    [Google Scholar]
  7. Gordon R. E., Barnett D. A., Handerhan J. E., Pang C. H.-N. 1974; Nocardia coeliaca , Nocardia autotrophica , and the nocardin strain. Int J Syst Bacteriol 24:54–63 [CrossRef]
    [Google Scholar]
  8. Grund E., Kroppenstedt R. M. 1989; Transfer of five Nocardiopsis species to the genus Saccharothrix Labeda et al. 1984. Syst Appl Microbiol 12:267–274 [CrossRef]
    [Google Scholar]
  9. Hasegawa T. 1988a; Actinokineospora : a new genus of the Actinomycetales . Actinomycetologica 2:31–45 [CrossRef]
    [Google Scholar]
  10. Hasegawa T. 1988b; Actinokineospora gen. nov. In Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB , List no. 27. Int J Syst Bacteriol 38:449 [CrossRef]
    [Google Scholar]
  11. Hayakawa M., Nonomura H. 1987; Humic acid-vitamin agar, a new medium for selective isolation of soil actinomycetes. J Ferment Technol 65:501–509 [CrossRef]
    [Google Scholar]
  12. Henssen A., Kothe H. W., Kroppenstedt R. M. 1987; Transfer of Pseudonocardia azurea and “ Pseudonocardia fastidiosa ” to the genus Amycolatopsis , with emended species description. Int J Syst Bacteriol 37:292–295 [CrossRef]
    [Google Scholar]
  13. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120 [CrossRef]
    [Google Scholar]
  14. Labeda D. P., Kroppenstedt R. M. 2000; Phylogenetic analysis of Saccharothrix and related taxa: proposal for Actinosynnemataceae fam. nov. Int J Syst Evol Microbiol 50:331–336 [CrossRef]
    [Google Scholar]
  15. Lechevalier M. P., De Bièvre C., Lechevalier H. A. 1977; Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5:249–260 [CrossRef]
    [Google Scholar]
  16. Lochhead A. G., Burton M. O. 1957; Qualitative studies of soil micro-organisms. XIV. Specific vitamin requirements of the predominant bacterial flora. Can J Microbiol 3:35–42 [CrossRef]
    [Google Scholar]
  17. Ludwig W., Strunk O., Westram R., Richter L., Meier H., Yadhukumar, Buchner A., Lai T., Steppi S. other authors 2004; arb: a software environment for sequence data. Nucleic Acids Res 32:1363–1371 [CrossRef]
    [Google Scholar]
  18. Otoguro M., Hayakawa M., Yamazaki T., Tamura T., Hatano K., Iimura Y. 2001; Numerical phenetic and phylogenetic analyses of Actinokineospora isolates, with a description of Actinokineospora auranticolor sp.nov. and Actinokineospora enzanensis sp. nov. Actinomycetologica 1530–39 [CrossRef]
  19. Price N. P. J. 2004; Acylic sugar derivatives for GC/MS analysis of 13C-enrichment during carbohydrate metabolism. Anal Chem 76:6566–6574 [CrossRef]
    [Google Scholar]
  20. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–426
    [Google Scholar]
  21. Shirling E. B., Gottlieb D. 1966; Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313–340 [CrossRef]
    [Google Scholar]
  22. Stamatakis A. P., Ludwig T., Meier H., Wolf M. J. 2002; AxML: a fast program for sequential and parallel phylogenetic tree calculations based on the maximum likelihood method. Proc IEEE Comput Soc Bioinform Conf 1:21–28
    [Google Scholar]
  23. Tamura T., Hayakawa M., Nonomura H., Yokota A., Hatano K. 1995; Four new species of the genus Actinokineospora : Actinokineospora inagensis sp.nov., Actinokineospora globicatena sp. nov., Actinokineospora terrae sp. nov., and Actinokineospora diospyrosa sp. nov. Int J Syst Bacteriol 45:371–378 [CrossRef]
    [Google Scholar]
  24. Tan G. Y. A., Ward A. C., Goodfellow M. 2006; Exploration of Amycolatopsis diversity in soil using genus-specific primers and novel selective media. Syst Appl Microbiol 29:557–569 [CrossRef]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.016568-0
Loading
/content/journal/ijsem/10.1099/ijs.0.016568-0
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error