1887

Abstract

A short coccoid- to rod-shaped, motile, mesophilic actinobacterium, strain MSL-22, was isolated from soil on Bigeum Island, Korea. A polyphasic study was undertaken to establish the taxonomic position of this strain. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain MSL-22 formed an evolutionary lineage within the radiation of the genus . In particular, it formed a monophyletic lineage with KCTC 9134 with which it shared the highest sequence similarity of about 97.3%. However, DNA–DNA relatedness demonstrated that strain MSL-22 was distinct from its closest phylogenetic neighbours. The cell-wall peptidoglycan of strain MSL-22 contained -diaminopimelic acid. The predominant menaquinone was MK-8(H). Strain MSL-22 had a cellular fatty acid profile containing straight-chain, branched, unsaturated and 10-methyl fatty acids, with iso-C as the major fatty acid. The DNA G+C content of the strain was 68.7 mol%. On the basis of phenotypic and phylogenetic evidence, the strain is separate from previously described members of the genus and represents a novel species in this genus, for which the name sp. nov. is proposed. The type strain is MSL-22 (=DSM 19432=KCTC 19310).

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2010-10-01
2024-04-16
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References

  1. Becker B., Lechevalier M. P., Lechevalier H. A. 1965; Chemical composition of cell-wall preparation from strains of various form genera of aerobic actinomycetes. Appl Microbiol 13:236–243
    [Google Scholar]
  2. Chou J.-H., Cho N.-T., Arun A. B., Young C.-C., Chen W.-M. 2008; Nocardioides fonticola sp. nov., a novel actinomycete isolated from spring water. Int J Syst Evol Microbiol 58:1864–1868 [CrossRef]
    [Google Scholar]
  3. Chun J., Goodfellow M. 1995; A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int J Syst Bacteriol 45:240–245 [CrossRef]
    [Google Scholar]
  4. Collins M. D., Pirouz T., Goodfellow M., Minnikin D. E. 1977; Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100:221–230 [CrossRef]
    [Google Scholar]
  5. Collins M. D., Cockcroft S., Wallbanks S. 1994; Phylogenetic analysis of a new ll-diaminopimelic acid-containing coryneform bacterium from herbage, Nocardioides plantarum sp. nov. Int J Syst Bacteriol 44:523–526 [CrossRef]
    [Google Scholar]
  6. Cowan S. T., Steel K. J. 1965 Manual for the Identification of Medical Bacteria London: Cambridge University Press;
    [Google Scholar]
  7. Dastager S. G., Lee J.-C., Ju Y.-J., Park D.-J., Kim C.-J. 2008a; Nocardioides halotolerans sp. nov. isolated from soil on Bigeum Island, Korea. Syst Appl Microbiol 31:24–29 [CrossRef]
    [Google Scholar]
  8. Dastager S. G., Lee J.-C., Ju Y.-J., Park D.-J., Kim C.-J. 2008b; Nocardioides islandiensis sp. nov., isolated from soil in Bigeum Island Korea. Antonie van Leeuwenhoek 93:401–406 [CrossRef]
    [Google Scholar]
  9. Dastager S. G., Lee J.-C., Ju Y.-J., Park D.-J., Kim C.-J. 2008c; Nocardioides dilutes sp. nov. isolated from soil in Bigeum Island, Korea. Curr Microbiol 56:569–573 [CrossRef]
    [Google Scholar]
  10. Dastager S. G., Lee J.-C., Ju Y.-J., Park D.-J., Kim C.-J. 2008d; Nocardioides tritolerans sp. nov. isolated from soil in Bigeum Island, Korea. J Microbiol Biotechnol 18:1203–1206
    [Google Scholar]
  11. Dastager S. G., Lee J.-C., Ju Y.-J., Park D.-J., Kim C.-J. 2008e; Nocardioides koreensis sp. nov., Nocardioides bigeumensis sp. nov. and Nocardioides agariphilus sp. nov., isolated from soil from Bigeum Island, Korea. Int J Syst Evol Microbiol 582292–2296 [CrossRef]
    [Google Scholar]
  12. Dastager S. G., Lee J.-C., Ju Y.-J., Park D.-J., Kim C.-J. 2009; Nocardioides sediminis sp. nov., isolated from a sediment sample. Int J Syst Evol Microbiol 59:280–284 [CrossRef]
    [Google Scholar]
  13. De Ley J., Cattoir H., Reynaerts A. 1970; The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12:133–142 [CrossRef]
    [Google Scholar]
  14. Felsenstein J. 1981; Evolutionary tree from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376 [CrossRef]
    [Google Scholar]
  15. Huß V. A. R., Festl H., Schleifer K. H. 1983; Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4:184–192 [CrossRef]
    [Google Scholar]
  16. Jahnke K. D. 1992; basic computer program for evaluation of spectroscopic DNA renaturation data from Gilford System 2600 spectrophotometer on a PC/XT/AT type personal computer. J Microbiol Methods 15:61–73 [CrossRef]
    [Google Scholar]
  17. Kämpfer P., Kroppenstedt R. M. 1996; Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42:989–1005 [CrossRef]
    [Google Scholar]
  18. Kim H.-M., Choi D.-H., Hwang C.-Y., Cho B. C. 2008; Nocardioides salarius sp. nov., isolated from seawater enriched with zooplankton. Int J Syst Evol Microbiol 58:2056–2064 [CrossRef]
    [Google Scholar]
  19. Kluge A. G., Farris J. S. 1969; Quantitative phyletics and the evolution of anurans. Syst Zool 18:1–32 [CrossRef]
    [Google Scholar]
  20. Lányí B. 1987; Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19:1–67
    [Google Scholar]
  21. Lechevalier M. P., Lechevalier H. A. 1980; The chemotaxonomy of actinomycetes. In Actinomycete Taxonomy Special Publication 6 pp 227–291 Edited by Dietz T. Arlington, VA: Society for Industrial Microbiology;
    [Google Scholar]
  22. Lechevalier M. P., De Bièvre C., Lechevalier H. A. 1977; Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5:249–260 [CrossRef]
    [Google Scholar]
  23. Lee S.-D., Lee D.-W., Kim J.-S. 2008; Nocardioides hwasunensis sp. nov. Int J Syst Evol Microbiol 58:278–281 [CrossRef]
    [Google Scholar]
  24. Park S.-C., Baik K.-S., Kim M.-S., Chun J. S., Seong C. N. 2008; Nocardioides dokdonensis sp. nov., an actinomycete isolated from sand sediment. Int J Syst Evol Microbiol 58:2619–2623 [CrossRef]
    [Google Scholar]
  25. Prauser H. 1976; Nocardioides , a new genus of the order Actinomycetales . Int J Syst Bacteriol 26:58–65 [CrossRef]
    [Google Scholar]
  26. Prauser H. 1984; Nocardioides luteus spec. nov. Z Allg Mikrobiol 24:647–648 [CrossRef]
    [Google Scholar]
  27. Reasoner D. J., Geldreich E. E. 1985; A new medium for the enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 49:1–7
    [Google Scholar]
  28. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
  29. Sasser M. 1990; Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20: 16
    [Google Scholar]
  30. Shirling E. B., Gottlieb D. 1966; Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313–340 [CrossRef]
    [Google Scholar]
  31. Tamaoka J., Komagata K. 1984; Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25:125–128 [CrossRef]
    [Google Scholar]
  32. Thompson J. D., Higgins D. G., Gibson T. J. 1994; clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680 [CrossRef]
    [Google Scholar]
  33. Tóth E. M., Kéki Z., Homonnay Z. G., Borsodi A. K., Márialigeti K., Schumann P. 2008; Nocardioides daphniae sp. nov., isolated from Daphnia cucullata (Crustacea: Cladocera). Int J Syst Evol Microbiol 58:78–83 [CrossRef]
    [Google Scholar]
  34. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E. other authors 1987; International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464 [CrossRef]
    [Google Scholar]
  35. Yoon J.-H., Park Y.-H. 2006; The genus Nocardioides . In The Prokaryotes. A Handbook on the Biology of Bacteria. , 3rd edn. vol 3 pp 1099–1113 Edited by Dworkin M., Falkow S., Rosenberg E., Schleifer K. H., Stackebrandt E. New York: Springer;
  36. Yoon J.-H., Rhee S.-K., Lee J.-S., Park Y.-H., Lee S. T. 1997; Nocardioides pyridinolyticus sp. nov., a pyridine-degrading bacterium isolated from the oxic zone of an oil shale column. Int J Syst Bacteriol 47:933–938 [CrossRef]
    [Google Scholar]
  37. Yoon J.-H., Kim I.-G., Kang K. H., Oh T.-K., Park Y.-H. 2004; Nocardioides aquiterrae sp. nov., isolated from groundwater in Korea. Int J Syst Evol Microbiol 54:71–75 [CrossRef]
    [Google Scholar]
  38. Yoon J.-H., Kang S.-J., Lee M.-H., Oh T.-K. 2008; Nocardioides hankookensis sp. nov., isolated from soil. Int J Syst Evol Microbiol 58:434–437 [CrossRef]
    [Google Scholar]
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