Methylobacterium marchantiae sp. nov., a pink-pigmented, facultatively methylotrophic bacterium isolated from the thallus of a liverwort

References

1. Austin B., Goodfellow M. 1979; Pseudomonas mesophilica, a new species of pink bacteria isolated from leaf surfaces. Int J Syst Bacteriol 29:373–378 [View Article]
   [Google Scholar]
2. Burdon K. L. 1946; Fatty material in bacteria and fungi revealed by staining dried, fixed slide preparations. J Bacteriol 52:665–678
   [Google Scholar]
3. Cashion P., Holder-Franklin M. A., McCully J., Franklin M. 1977; A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81:461–466 [View Article][PubMed]
   [Google Scholar]
4. Choi J. H., Kim J. H., Daniel M., Lebeault J. M. 1989; Optimization of growth medium and poly-β-hydroxybutyric acid production from methanol in Methylobacterium organophilum . Kor J Appl Microbiol Bioeng 17:392–396
   [Google Scholar]
5. De Ley J., Cattoir H., Reynaerts A. 1970; The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12:133–142 [View Article][PubMed]
   [Google Scholar]
6. Delmotte N., Knief C., Chaffron S., Innerebner G., Roschitzki B., Schlapbach R., von Mering C., Vorholt J. A. 2009; Community proteogenomics reveals insights into the physiology of phyllosphere bacteria. Proc Natl Acad Sci U S A 106:16428–16433 [View Article][PubMed]
   [Google Scholar]
7. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791 [View Article]
   [Google Scholar]
8. Green P. N. 2006; Methylobacterium . In The Prokaryotes. A Handbook on the Biology of Bacteria, 3rd edn. vol. 5 pp. 257–265 Edited by Dworkin M., Falkow S., Rosenberg E., Schleifer K. H., Stackebrandt E. New York: Springer;
   [Google Scholar]
9. Green P. N., Bousfield I. J. 1982; A taxonomic study of some Gram-negative facultatively methylotrophic bacteria. J Gen Microbiol 128:623–638
   [Google Scholar]
10. Green P. N., Bousfield I. J. 1983; Emendation of Methylobacterium Patt, Cole, and Hanson 1976; Methylobacterium rhodinum (Heumann 1962) comb. nov. corrig.; Methylobacterium radiotolerans (Ito and Iizuka 1971) comb. nov., corrig.; and Methylobacterium mesophilicum (Austin and Goodfellow 1979) comb. nov.. Int J Syst Bacteriol 33:875–877 [View Article]
    [Google Scholar]
11. Hall T. A. 1999; BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98
    [Google Scholar]
12. Heimbrook M. E., Wang W. L., Campbell G. 1989; Staining bacterial flagella easily. J Clin Microbiol 27:2612–2615[PubMed]
    [Google Scholar]
13. Holland M. A. 1997; Methylobacterium and plants. Rec Res Dev Plant Physiol 1:207–213
    [Google Scholar]
14. Hornschuh M., Grotha R., Kutschera U. 2002; Epiphytic bacteria associated with the bryophyte Funaria hygrometrica: effects of Methylobacterium strains on protonema development. Plant Biol 4:682–687 [View Article]
    [Google Scholar]
15. Hornschuh M., Grotha R., Kutschera U. 2006; Moss-associated methylobacteria as phytosymbionts: an experimental study. Naturwissenschaften 93:480–486 [View Article][PubMed]
    [Google Scholar]
16. Huß V. A. R., Festl H., Schleifer K. H. 1983; Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4:184–192 [CrossRef]
    [Google Scholar]
17. Hüve K., Christ M. M., Kleist E., Uerlings R., Niinemets Ü., Walter A., Wildt J. 2007; Simultaneous growth and emission measurements demonstrate an interactive control of methanol release by leaf expansion and stomata. J Exp Bot 58:1783–1793 [View Article][PubMed]
    [Google Scholar]
18. Idris R. A., Kuffner M., Bodrossy L., Puschenreiter M., Monchy S., Wenzel W. W., Sessitsch A. 2006; Characterization of Ni-tolerant methylobacteria associated with the hyperaccumulating plant Thlaspi goesingense and description of Methylobacterium goesingense sp. nov.. Syst Appl Microbiol 29:634–644 [View Article][PubMed]
    [Google Scholar]
19. Ivanova E. G., Doronina N. V., Shepeliakovskaia A. O., Laman A. G., Brovko F. A., Trotsenko Iu. A. 2000; [Facultative and obligate aerobic methylobacteria synthesize cytokinins]. Mikrobiologiia 69:764–769 (in Russian) [PubMed]
    [Google Scholar]
20. Ivanova E. G., Doronina N. V., Trotsenko Iu. A. 2001; [Aerobic methylobacteria are capable of synthesizing auxins]. Mikrobiologiia 70:452–458 (in Russian) [PubMed]
    [Google Scholar]
21. Jukes T. H., Cantor C. R. 1969; Evolution of protein molecules. In Mammalian Protein Metabolism vol. 3 pp. 21–132 Edited by Munro H. N. New York: Academic Press;
    [Google Scholar]
22. Kämpfer P., Kroppenstedt R. M. 1996; Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42:989–1005 [View Article]
    [Google Scholar]
23. Kato Y., Asahara M., Goto K., Kasai H., Yokota A. 2008; Methylobacterium persicinum sp. nov., Methylobacterium komagatae sp. nov., Methylobacterium brachiatum sp. nov., Methylobacterium tardum sp. nov. and Methylobacterium gregans sp. nov., isolated from freshwater. Int J Syst Evol Microbiol 58:1134–1141 [View Article][PubMed]
    [Google Scholar]
24. Koenig R. L., Morris R. O., Polacco J. C. 2002; tRNA is the source of low-level trans-zeatin production in Methylobacterium spp.. J Bacteriol 184:1832–1842 [View Article][PubMed]
    [Google Scholar]
25. Kutschera U. 2007; Plant-associated methylobacteria as co-evolved phytosymbionts: a hypothesis. Plant Signal Behav 2:74–78[PubMed] [CrossRef]
    [Google Scholar]
26. Kutschera U., Koopmann V. 2005; Growth in liverworts of the Marchantiales is promoted by epiphytic methylobacteria. Naturwissenschaften 92:347–349 [View Article][PubMed]
    [Google Scholar]
27. Kutschera U., Thomas J., Hornschuh M. 2007; Cluster formation in liverwort-associated methylobacteria and its implications. Naturwissenschaften 94:687–692 [View Article][PubMed]
    [Google Scholar]
28. Lee S. W., Oh H. W., Lee K. H., Ahn T. Y. 2009; Methylobacterium dankookense sp. nov., isolated from drinking water. J Microbiol 47:716–720 [View Article][PubMed]
    [Google Scholar]
29. Lindow S. E., Brandl M. T. 2003; Microbiology of the phyllosphere. Appl Environ Microbiol 69:1875–1883 [View Article][PubMed]
    [Google Scholar]
30. Madhaiyan M., Poonguzhali S., Kwon S. W., Sa T. M. 2009; Methylobacterium phyllosphaerae sp. nov., a pink-pigmented, facultative methylotroph from the phyllosphere of rice. Int J Syst Evol Microbiol 59:22–27 [View Article][PubMed]
    [Google Scholar]
31. McDonald I. R., Kenna E. M., Murrell J. C. 1995; Detection of methanotrophic bacteria in environmental samples with the PCR. Appl Environ Microbiol 61:116–121[PubMed]
    [Google Scholar]
32. Nemecek-Marshall M., MacDonald R. C., Franzen J. J., Wojciechowski C. L., Fall R. 1995; Methanol emission from leaves. Enzymatic detection of gas-phase methanol and relation of methanol fluxes to stomatal conductance and leaf development. Plant Physiol 108:1359–1368[PubMed]
    [Google Scholar]
33. Ottow J. C. G. 1975; Ecology, physiology, and genetics of fimbriae and pili. Annu Rev Microbiol 29:79–108 [View Article][PubMed]
    [Google Scholar]
34. Patt T. E., Cole G. C., Bland J., Hanson R. S. 1974; Isolation and characterization of bacteria that grow on methane and organic compounds as sole sources of carbon and energy. J Bacteriol 120:955–964[PubMed]
    [Google Scholar]
35. Patt T. E., Cole G. C., Hanson R. S. 1976; Methylobacterium, a new genus of facultatively methylotrophic bacteria. Int J Syst Bacteriol 26:226–229 [View Article]
    [Google Scholar]
36. Pitcher D. G., Saunders N. A., Owen R. J. 1989; Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett Appl Microbiol 8:151–156 [View Article]
    [Google Scholar]
37. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425[PubMed]
    [Google Scholar]
38. Sato K. 1978; Bacteriochlorophyll formation by facultative methylotrophs, Protaminobacter ruber and Pseudomonas AM 1. FEBS Lett 85:207–210 [View Article][PubMed]
    [Google Scholar]
39. Schauer S., Kutschera U. 2008; Methylotrophic bacteria on the surfaces of field-grown sunflower plants: a biogeographic perspective. Theory Biosci 127:23–29 [View Article][PubMed]
    [Google Scholar]
40. Sy A., Giraud E., Jourand P., Garcia N., Willems A., de Lajudie P., Prin Y., Neyra M., Gillis M. et al. 2001; Methylotrophic Methylobacterium bacteria nodulate and fix nitrogen in symbiosis with legumes. J Bacteriol 183:214–220 [View Article][PubMed]
    [Google Scholar]
41. Tamura K., Dudley J., Nei M., Kumar S. 2007; mega4: molecular evolutionary genetics analysis (mega) software version 4.0. Mol Biol Evol 24:1596–1599 [View Article][PubMed]
    [Google Scholar]
42. Thompson J. D., Higgins D. G., Gibson T. J. 1994; clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680 [View Article][PubMed]
    [Google Scholar]
43. Weon H.-Y., Kim B.-Y., Joa J.-H., Son J.-A., Song M.-H., Kwon S.-W., Go S.-J., Yoon S.-H. 2008; Methylobacterium iners sp. nov. and Methylobacterium aerolatum sp. nov., isolated from air samples in Korea. Int J Syst Evol Microbiol 58:93–96 [View Article][PubMed]
    [Google Scholar]
44. Yurkov V. V., Beatty J. T. 1998; Aerobic anoxygenic phototrophic bacteria. Microbiol Mol Biol Rev 62:695–724[PubMed]
    [Google Scholar]
45. Ziemke F., Höfle M. G., Lalucat J., Rosselló-Mora R. 1998; Reclassification of Shewanella putrefaciens Owen’s genomic group II as Shewanella baltica sp. nov.. Int J Syst Bacteriol 48:179–186 [View Article][PubMed]
    [Google Scholar]