1887

Abstract

Three Gram-positive, rod-shaped bacterial strains were isolated from the drinking water supply system of the Hungarian capital, Budapest. Phylogenetic analysis on the basis of 16S rRNA gene sequence comparison revealed that the isolates represented a distinct cluster within the clade of the genus and were most closely related to OS4, GW-9, MSL-01 and DS-30. The peptidoglycan based on -2,6-diaminopimelic acid, the major menaquinone MK-8(H), the cellular fatty acid profile with iso-C and anteiso-C as predominating components and the DNA G+C content of 71.4 mol% (strain 1RaM5-12) were consistent with the affiliation of the isolates to the genus . Because of differences in physiological characteristics, matrix-assisted laser-desorption/ionization time-of-flight mass spectra of protein extracts, II RiboPrinter patterns and 96.1 % 16S rRNA gene sequence similarity between strain 1RaM5-12 and its closest phylogenetic neighbour, OS4, a novel species, sp. nov., is proposed. The type strain is 1RaM5-12 (=DSM 21673 =NCAIM 02330).

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2011-03-01
2024-04-19
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References

  1. Altschul S. F., Madden T. L., Schäffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J. 1997; Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402 [CrossRef]
    [Google Scholar]
  2. Bruce J. 1996; Automated system rapidly identifies and characterizes microorganisms in food. Food Technol 50:77–81
    [Google Scholar]
  3. Cashion P., Holder-Franklin M. A., McCully J., Franklin M. 1977; A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81:461–466 [CrossRef]
    [Google Scholar]
  4. Choi D. H., Kim H. M., Noh J.-H., Cho B. C. 2007; Nocardioides marinus sp. nov. Int J Syst Evol Microbiol 57:775–779 [CrossRef]
    [Google Scholar]
  5. Chun J., Lee J.-H., Jung Y., Kim M., Kim S., Kim B. K., Lim Y.-W. 2007; EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57:2259–2261 [CrossRef]
    [Google Scholar]
  6. Claus M. 1992; A standardized Gram staining procedure. World J Microbiol Biotechnol 8:451–452 [CrossRef]
    [Google Scholar]
  7. Collins M. D., Pirouz T., Goodfellow M., Minnikin D. E. 1977; Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100:221–230 [CrossRef]
    [Google Scholar]
  8. Collins M. D., Cockcroft S., Wallbanks S. 1994; Phylogenetic analysis of a new ll-diaminopimelic acid-containing coryneform bacterium from herbage, Nocardioides plantarum sp. nov. Int J Syst Bacteriol 44:523–526 [CrossRef]
    [Google Scholar]
  9. Cowan S. T., Steel K. J. 1974 Cowan and Steel's Manual for the Identification of Medical Bacteria, 2nd edn. London: Cambridge University Press;
    [Google Scholar]
  10. Dastager S. G., Lee J.-C., Ju Y.-J., Park D.-J., Kim C.-J. 2008a; Nocardioides islandiensis sp. nov., isolated from soil in Bigeum Island Korea. Antonie van Leeuwenhoek 93:401–406 [CrossRef]
    [Google Scholar]
  11. Dastager S. G., Lee J.-C., Ju Y.-J., Park D.-J., Kim C.-J. 2008b; Nocardioides tritolerans sp. nov., isolated from soil in Bigeum Island, Korea. J Microbiol Biotechnol 18:1203–1206
    [Google Scholar]
  12. Dastager S. G., Lee J.-C., Ju Y.-J., Park D.-J., Kim C.-J. 2009; Nocardioides sediminis sp. nov., isolated from a sediment sample. Int J Syst Evol Microbiol 59:280–284 [CrossRef]
    [Google Scholar]
  13. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–789 [CrossRef]
    [Google Scholar]
  14. Fitch W. M. 1971; Towards defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406–416 [CrossRef]
    [Google Scholar]
  15. Garrett T. R., Bhakoo M., Zhang Z. 2008; Bacterial adhesion and biofilms on surfaces. Prog Nat Sci 18:1049–1056 [CrossRef]
    [Google Scholar]
  16. Groth I., Schumann P., Weiss N., Martin K., Rainey F. A. 1996; Agrococcus jenensis gen. nov., sp. nov. a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46:234–239 [CrossRef]
    [Google Scholar]
  17. Groth I., Schumann P., Rainey F. A., Martin K., Schuetze B., Augsten K. 1997; Demetria terragena gen. nov., sp. nov. a new genus of actinomycetes isolated from compost soil. Int J Syst Bacteriol 47:1129–1133 [CrossRef]
    [Google Scholar]
  18. Hasegawa T., Takizawa M., Tanida S. 1983; A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29:319–322 [CrossRef]
    [Google Scholar]
  19. Homonnay Z. G., Makk J., Brumbauer A., Párkány-Simon B., Márialigeti K. M., Tóth E. 2008; Investigations on the bacterial community of two characteristic sites of drinking water network of Budapest. Hid Közl 88:79–81 (in Hungarian)
    [Google Scholar]
  20. Hugh R., Leifson E. 1953; The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various Gram negative bacteria. J Bacteriol 66:24–26
    [Google Scholar]
  21. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120 [CrossRef]
    [Google Scholar]
  22. Kubota M., Kawahara K., Sekiya K., Uchida T., Hattori Y., Futamata H., Hiraishi A. 2005; Nocardioides aromaticivorans sp. nov., a dibenzofuran-degrading bacterium isolated from dioxin-polluted environments. Syst Appl Microbiol 28:165–174 [CrossRef]
    [Google Scholar]
  23. Lawson P. A., Collins M. D., Schumann P., Tindall B. J., Hirsch P., Labrenz M. 2000; New ll-diaminopimelic acid-containing actinomycetes from hypersaline, heliothermal and meromictic Antarctic Ekho Lake: Nocardioides aquaticus sp.nov. and Friedmanniella [correction of Friedmannielly ] lacustris sp. nov. Syst Appl Microbiol 23:219–229 [CrossRef]
    [Google Scholar]
  24. Mesbah M., Premachandran U., Whitman W. B. 1989; Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167 [CrossRef]
    [Google Scholar]
  25. Minnikin D. E., Collins M. D., Goodfellow M. 1979; Fatty acid and polar lipid composition in the classification of Cellulomonas , Oerskovia and related taxa. J Appl Bacteriol 47:87–95 [CrossRef]
    [Google Scholar]
  26. Murray R. G. E., Doetsch R. N., Robinov C. F. 1994; Determinative and cytological light microscopy. In Methods for General and Molecular Bacteriology pp 21–41 Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. Washington, DC: American Society for Microbiology;
    [Google Scholar]
  27. Pearson W. R., Lipman D. J. 1988; Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 85:2444–2448 [CrossRef]
    [Google Scholar]
  28. Rainey F. A., Ward-Rainey N., Kroppenstedt R. M., Stackebrandt E. 1996; The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46:1088–1092 [CrossRef]
    [Google Scholar]
  29. Reasoner D. J., Geldreich E. E. 1985; A new medium for the enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 49:1–7
    [Google Scholar]
  30. Rzhetsky A., Nei M. 1992; A simple method for estimating and testing minimum-evolution trees. Mol Biol Evol 9:945–967
    [Google Scholar]
  31. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
  32. Schippers A., Schumann P., Spröer C. 2005; Nocardioides oleivorans sp. nov., a novel crude-oil-degrading bacterium. Int J Syst Evol Microbiol 55:1501–1504 [CrossRef]
    [Google Scholar]
  33. Smibert R. M., Krieg N. R. 1994; Phenotypic characterisation. In Methods for General and Molecular Bacteriology. pp 603–711 Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. Washington, DC: American Society for Microbiology;
  34. Stead D. E., Sellwood J. E., Wilson J., Viney I. 1992; Evaluation of a commercial microbial identification system based on fatty acid profiles for rapid, accurate identification of plant pathogenic bacteria. J Appl Bacteriol 72:315–321 [CrossRef]
    [Google Scholar]
  35. Tamaoka J., Komagata K. 1984; Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25:125–128 [CrossRef]
    [Google Scholar]
  36. Tamura K., Dudley J., Nei M., Kumar S. 2007; mega4: molecular evolutionary genetics analysis (mega) software version 4.0. Mol Biol Evol 24:1596–1599 [CrossRef]
    [Google Scholar]
  37. Tarrand J. J., Gröschel D. H. M. 1982; Rapid, modified oxidase test for oxidase-variable bacterial isolates. J Clin Microbiol 16:772–774
    [Google Scholar]
  38. Tóth E. M., Schumann P., Borsodi A. K., Kéki Zs., Kovács A. L., Márialigeti K. 2008a; Wohlfahrtiimonas chitiniclastica gen. nov., sp. nov., a new gammaproteobacterium isolated from Wohlfahrtia magnifica (Diptera: Sarcophagidae). Int J Syst Evol Microbiol 58:976–981 [CrossRef]
    [Google Scholar]
  39. Tóth E. M., Kéki Zs., Homonnay Z. G., Borsodi A. K., Márialigeti K., Schumann P. 2008b; Nocardioides daphniae sp. nov., isolated from Daphnia cucullata (Crustacea: Cladocera). Int J Syst Evol Microbiol 58:78–83 [CrossRef]
    [Google Scholar]
  40. Yamada K., Komagata K. 1972; Taxonomic studies on coryneform bacteria. IV. Morphological, cultural, biochemical, and physiological characteristics. J Gen Appl Microbiol 18:399–416 [CrossRef]
    [Google Scholar]
  41. Yoon J.-H., Rhee S.-K., Lee J.-S., Park Y.-H., Lee S. T. 1997; Nocardioides pyridinolyticus sp. nov., a pyridine-degrading bacterium isolated from the oxic zone of an oil shale column. Int J Syst Bacteriol 47:933–938 [CrossRef]
    [Google Scholar]
  42. Yoon J.-H., Cho Y.-G., Lee S. T., Suzuki K., Nakase T., Park Y.-H. 1999; Nocardioides nitrophenolicus sp. nov., a p -nitrophenol-degrading bacterium. Int J Syst Bacteriol 49:675–680 [CrossRef]
    [Google Scholar]
  43. Yoon J.-H., Kim I.-G., Kang K. H., Oh T.-K., Park Y.-H. 2004; Nocardioides aquiterrae sp. nov., isolated from groundwater in Korea. Int J Syst Evol Microbiol 54:71–75 [CrossRef]
    [Google Scholar]
  44. Yoon J.-H., Kang S.-J., Lee M.-H., Oh T.-K. 2008; Nocardioides hankookensis sp. nov., isolated from soil. Int J Syst Evol Microbiol 58:434–437 [CrossRef]
    [Google Scholar]
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