rDNA sequence analyses of Streptococcus dysgalactiae subsp. equisimilis isolates from pigs

References

1. Amann R. I., Lin C., Key R., Montgomery L., Stahl D. A. 1992; Diversity among Fibrobacter strains: towards a phylogenetic classification. Syst Appl Microbiol 15:23–32
   [Google Scholar]
2. Ash C., Collins M. D. 1992; Comparative analysis of 23S ribosomal RNA gene sequences of Bacillus anthracis and emetic Bacillus cereus determined by PCR-direct sequencing. FEMS Microbiol Lett 94:75–80 [CrossRef]
   [Google Scholar]
3. Bentley R. W., Leigh L. A., Collins M. D. 1991; Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences. Int J Syst Bacteriol 41:487–494 [CrossRef]
   [Google Scholar]
4. Bert F., Picard B., Lambert-Zechovsky N., Goullet P. 1995; Identification and typing of pyogenic streptococci by enzyme electrophoretic polymorphism. J Med Microbiol 42:442–451 [CrossRef]
   [Google Scholar]
5. Bert F., Picard B., Branger C., Lambert-Zechovsky N. 1996; Analysis of genetic relationships among strains of groups A, C and G streptococci by random amplified polymorphic DNA analysis. J Med Microbiol 45:278–284 [CrossRef]
   [Google Scholar]
6. Bert F., Branger C., Poutrel B., Lambert-Zechovsky N. 1997; Differentiation of human and animal strains of Streptococcus dysgalactiae by pulsed-field gel electrophoresis. FEMS Microbiol Lett 150:107–112 [CrossRef]
   [Google Scholar]
7. Brosius J., Dull T. J., Sleeter D. D., Noller H. F. 1981; Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli . J Mol Biol 148:107–127 [CrossRef]
   [Google Scholar]
8. Chanter N., Collin N., Holmes N., Binns M., Mumford J. 1997; Characterization of the Lancefield group C streptococcus 16S-23S RNA gene intergenic spacer and its potential for identification and sub-specific typing. Epidemiol Infect 118:125–135 [CrossRef]
   [Google Scholar]
9. Devriese L. A. 1991; Streptococcal ecovars associated with different animal species: epidemiological significance of serogroups and biotypes. J Appl Bacteriol 71:478–483 [CrossRef]
   [Google Scholar]
10. Efstratiou A., Colman G., Hahn G., Timoney J. F., Boeufgras J. M., Monget D. 1994; Biochemical differences among human and animal streptococci of Lancefield group C or group G. J Med Microbiol 41:145–148 [CrossRef]
    [Google Scholar]
11. Ezaki T., Hashimoto Y., Yabuuchi E. 1989; Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224–229 [CrossRef]
    [Google Scholar]
12. Farrow J. A. E., Collins M. D. 1984; Taxonomic studies on streptococci of serological groups C, G and L and possibly related taxa. Syst Appl Microbiol 5:483–493 [CrossRef]
    [Google Scholar]
13. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using bootstrap. Evolution 39:783–791 [CrossRef]
    [Google Scholar]
14. Fox G. E., Wisotzkey J. D., Jurtshuk P. Jr 1992; How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int J Syst Bacteriol 42:166–170 [CrossRef]
    [Google Scholar]
15. Hommez J., Devriese L. A., Castryck F., Miry C. 1991; β -Hemolytic streptococci from pigs: bacteriological diagnosis. J Vet Med B 38:441–444
    [Google Scholar]
16. Höpfl P., Ludwig W., Schleifer K. H., Larsen N. 1989; The 23S ribosomal RNA higher-order structure of Pseudomonas cepacia and other prokaryotes. Eur J Biochem 185:355–364 [CrossRef]
    [Google Scholar]
17. Hultman T., Ståhl S., Hornes E., Uhlén M. 1989; Direct solid phase sequencing of genomic and plasmid DNA using magnetic beads as solid support. Nucleic Acids Res 17:4937–4946 [CrossRef]
    [Google Scholar]
18. Hultman T., Bergh S., Moks T., Uhlén M. 1991; Bidirectional solid-phase sequencing of in vitro-amplified plasmid DNA. Biotechniques 10:84–93
    [Google Scholar]
19. Jones J. E. T. 1980; Bacterial endocarditis in the pig with special reference to streptococcal endocarditis. J Comp Pathol 90:11–28 [CrossRef]
    [Google Scholar]
20. Katsumi M., Kataoka Y., Takahashi T., Kikuchi N., Hiramune T. 1997; Bacterial isolation from slaughtered pigs associated with endocarditis, especially the isolation of Streptococcus suis . J Vet Med Sci 59:75–78 [CrossRef]
    [Google Scholar]
21. Kawamura Y., Hou X.-G., Sultana F., Miura H., Ezaki T. 1995a; Determination of 16S rRNA sequences of Streptococcus mitis and Streptococcus gordonii and phylogenetic relationships among members of the genus Streptococcus . Int J Syst Bacteriol 45:406–408 [CrossRef]
    [Google Scholar]
22. Kawamura Y., Hou X.-G., Sultana F., Liu S., Yamamoto H., Ezaki T. 1995b; Transfer of Streptococcus adjacens and Streptococcus defectivus to Abiotrophia gen. nov. as Abiotrophia adiacens comb. nov. and Abiotrophia defectiva comb. nov., respectively. Int J Syst Bacteriol 45:798–803 [CrossRef]
    [Google Scholar]
23. Kilpper-Bälz R., Schleifer K. H. 1984; Nucleic acid hybridization and cell wall composition of pyogenic streptococci. FEMS Microbiol Lett 24:355–364 [CrossRef]
    [Google Scholar]
24. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120 [CrossRef]
    [Google Scholar]
25. Lancefield R. C. 1938; A micro precipitin technique for classifying hemolytic streptococci, and improved methods for producing antisera. Proc Soc Exp Biol Med 38:473–478 [CrossRef]
    [Google Scholar]
26. Lane D. J. 1991; 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics pp 115–175Edited by Stackebrandt E., Goodfellow M. New York: Wiley;
    [Google Scholar]
27. Ludwig W., Schleifer K. H. 1994; Bacterial phylogeny based on 16S and 23S rRNA sequence analysis. FEMS Microbiol Rev 15:155–173 [CrossRef]
    [Google Scholar]
28. Ludwig W., Schleifer K. H. 1999; Phylogeny of Bacteria beyond the 16S rRNA standard. ASM News 65:752–757
    [Google Scholar]
29. Ludwig W., Kirchhof G., Klugbauer N. 13 other authors 1992; Complete 23S ribosomal RNA sequences of Gram-positive bacteria with a low DNA G+C content. Syst Appl Microbiol 15:487–501 [CrossRef]
    [Google Scholar]
30. Raué H. A., Musters W., Rutgers C. A., Van't Riet J., Planta R. J. 1990; rRNA: structure to function. In The Ribosome: Structure, Function and Evolution pp 217–235Edited by Hill W. E., Dahlberg A., Garrett R. A., Moore P. B., Schlessinger D., Warner J. R. Washington, DC: American Society for Microbiology;
    [Google Scholar]
31. Rogall T., Wolters J., Flohr T., Böttger E. C. 1990; Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium . Int J Syst Bacteriol 40:323–330 [CrossRef]
    [Google Scholar]
32. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
33. Sallen B., Rajoharison A., Desvarenne S., Quinn F., Mabilat C. 1996; Comparative analysis of 16S and 23S rRNA sequences of Listeria species. Int J Syst Bacteriol 46:669–674 [CrossRef]
    [Google Scholar]
34. Stackebrandt E., Goebel B. M. 1994; Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846–849 [CrossRef]
    [Google Scholar]
35. Takahashi T., Kaneko M., Mori Y., Tsuji M., Kikuchi N., Hiramune T. 1997; Phylogenetic analyses of Staphylococcus based on the 16S rDNA sequence and assignment of clinical isolates from animals. J Vet Med Sci 59:775–783 [CrossRef]
    [Google Scholar]
36. Van Camp G., Chapelle S., De Wachter R. 1993; Amplification and sequencing of variable regions in bacterial 23S ribosomal RNA genes with conserved primer sequences. Curr Microbiol 27:147–151 [CrossRef]
    [Google Scholar]
37. Vandamme P., Pot B., Falsen E., Kersters K., Devriese L. A. 1996; Taxonomic study of Lancefield streptococcal groups C, G, and L ( Streptococcus dysgalactiae ) and proposal of S. dysgalactiae subsp. equisimilis subsp. nov. Int J Syst Bacteriol 46:774–781 [CrossRef]
    [Google Scholar]
38. Vieira V. V., Teixeira L. M., Zahner V., Momen H., Facklam R. R., Steigerwalt A. G., Brenner D. J., Castro A. C. D. 1998; Genetic relationships among the different phenotypes of Streptococcus dysgalactiae strains. Int J Syst Bacteriol 48:1231–1243 [CrossRef]
    [Google Scholar]
39. Ward N. L., Rainey F. A., Hedlund B. P., Staley J. T., Ludwig W., Stackebrandt E. 2000; Comparative phylogenetic analyses of members of the order Planctomycetales and the division Verrucomicrobia : 23S rRNA gene sequence analysis supports the 16S rRNA gene sequence-derived phylogeny. Int J Syst Evol Microbiol 50:1965–1972 [CrossRef]
    [Google Scholar]