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Abstract

A Gram-stain-negative, non-motile, aerobic, endospore forming and rod-shaped bacterium, designated strain L10, was isolated from marine sediment collected from the South Korean coast. The organism grew optimally under conditions of 30 °C, 1 % (w/v) NaCl and pH 6.0. It was oxidase-negative and catalase-positive. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain L10 was associated with the genus and most closely related to BP-23 (98.2 % similarity). The major fatty acids of strain L10 were iso-C, anteiso-C and iso-C. The cell-wall peptidoglycan was the A1γ type, and the predominant isoprenoid quinone was menaquinone-7. Strain L10 contained two unidentified lipids, an unidentified amino-phospholipid, phosphatidylethanolamine, phosphatidylglycerol, and diphosphatidylglycerol. The G+C content of the genomic DNA was 44 mol% and the DNA–DNA hybridization values with closely related strains were below 14±2 %. Based on phenotypic, genotypic, and phylogenetic data, strain L10 should be classified as a novel species within the genus . The name sp. nov. is proposed. The type strain is L10 ( = KACC 16203 = JCM 17814).

Funding
This study was supported by the:
  • National Institute of Biological Resources (NIBR)
  • National Fisheries Research and Development Institute (NFRDI)
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2013-02-01
2024-04-20
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References

  1. Ash C., Priest F. G., Collins M. D. ( 1993 ). Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test.. Antonie van Leeuwenhoek 64, 253260. [View Article] [PubMed]
    [Google Scholar]
  2. Ash C., Priest F. G., Collins M. D. ( 1994 ). Paenibacillus polymyxa comb. nov. In validation of the publication of new names and new combinations previously effectively published outside the IJSB, Validation List no. 51. . Int J Syst Bacteriol 44, 852. [View Article]
    [Google Scholar]
  3. Bae J. W., Rhee S. K., Park J. R., Chung W. H., Nam Y. D., Lee I., Kim H., Park Y. H. ( 2005 ). Development and evaluation of genome-probing microarrays for monitoring lactic acid bacteria. . Appl Environ Microbiol 71, 88258835. [View Article] [PubMed]
    [Google Scholar]
  4. Baker G. C., Smith J. J., Cowan D. A. ( 2003 ). Review and re-analysis of domain-specific 16S primers. . J Microbiol Methods 55, 541555. [View Article] [PubMed]
    [Google Scholar]
  5. Bousfield I. J., Keddie R. M., Dando T. R., Shaw S. ( 1985 ). Simple rapid methods of cell wall analysis as an aid in the identification of aerobic coryneform bacteria. . In Chemical Methods in Bacterial Systematics, pp. 221236. Edited by Goodfellow M., Minnikin D. E. . London:: Academic press;.
    [Google Scholar]
  6. Chang H. W., Nam Y. D., Jung M. Y., Kim K. H., Roh S. W., Kim M. S., Jeon C. O., Yoon J. H., Bae J. W. ( 2008 ). Statistical superiority of genome-probing microarrays as genomic DNA-DNA hybridization in revealing the bacterial phylogenetic relationship compared to conventional methods. . J Microbiol Methods 75, 523530. [View Article] [PubMed]
    [Google Scholar]
  7. Collins M. D., Jones D. ( 1981a ). Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implication. . Microbiol Rev 45, 316354.[PubMed]
    [Google Scholar]
  8. Collins M. D., Jones D. ( 1981b ). A note on the separation of natural mixtures of bacterial ubiquinones using reverse-phase partition thin-layer chromatography and high performance liquid chromatography. . J Appl Bacteriol 51, 129134. [View Article] [PubMed]
    [Google Scholar]
  9. Felsenstein J. ( 1981 ). Evolutionary trees from DNA sequences: a maximum likelihood approach. . J Mol Evol 17, 368376. [View Article] [PubMed]
    [Google Scholar]
  10. Gonzalez J. M., Saiz-Jimenez C. ( 2002 ). A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature. . Environ Microbiol 4, 770773. [View Article] [PubMed]
    [Google Scholar]
  11. Kämpfer P., Rosselló-Mora R., Falsen E., Busse H. J., Tindall B. J. ( 2006 ). Cohnella thermotolerans gen. nov., sp. nov., and classification of ‘Paenibacillus hongkongensis’ as Cohnella hongkongensis sp. nov.. Int J Syst Evol Microbiol 56, 781786. [View Article] [PubMed]
    [Google Scholar]
  12. Kluge A. G., Farris F. S. ( 1969 ). Quantitative phyletics and the evolution of anurans. . Syst Zool 18, 132. [View Article]
    [Google Scholar]
  13. Lee F. L., Tien C. J., Tai C. J., Wang L. T., Liu Y. C., Chern L. L. ( 2008 ). Paenibacillus taichungensis sp. nov., from soil in Taiwan. . Int J Syst Evol Microbiol 58, 26402645. [View Article] [PubMed]
    [Google Scholar]
  14. Logan N. A., Berge O., Bishop A. H., Busse H. J., De Vos P., Fritze D., Heyndrickx M., Kämpfer P., Rabinovitch L. & other authors ( 2009 ). Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria. . Int J Syst Evol Microbiol 59, 21142121. [View Article] [PubMed]
    [Google Scholar]
  15. Loy A., Schulz C., Lücker S., Schöpfer-Wendels A., Stoecker K., Baranyi C., Lehner A., Wagner M. ( 2005 ). 16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order “Rhodocyclales” . . Appl Environ Microbiol 71, 13731386. [View Article] [PubMed]
    [Google Scholar]
  16. MIDI ( 1999 ). Sherlock Microbial Identification System Operating Manual, version 3.0. Newark, DE: MIDI, Inc.
  17. Nakamura L. K. ( 1984 ). Bacillus amylolyticus sp. nov., nom. rev., Bacillus lautus sp. nov., nom. rev., Bacillus pabuli sp. nov., norn. rev., and Bacillus validus sp. nov., nom. rev.. Int J Syst Bacteriol 34, 224226. [View Article]
    [Google Scholar]
  18. Nanjo F., Goto K., Oka H., Muramatsu H., Kato S., Nagata S. ( 2008 ). Purification and Properties of Cycloinulooligosaccharide Fructanotransferase from Paenibacillus polymyxa MG-CF6. . J Appl Glycosci 55, 217224. [View Article]
    [Google Scholar]
  19. Oh H. W., Kim B. C., Lee K. H., Kim Y., Park D. S., Park H. M., Bae K. S. ( 2008 ). Paenibacillus camelliae sp. nov., isolated from fermented leaves of Camellia sinensis . . J Microbiol 46, 530534. [View Article] [PubMed]
    [Google Scholar]
  20. Reva O. N., Vyunitskaya V. A., Reznik S. R., Kozachko I. A., Smirnov V. V. ( 1995 ). Antibiotic susceptibility as a taxonomic characteristic of the genus Bacillus . . Int J Syst Bacteriol 45, 409411. [View Article] [PubMed]
    [Google Scholar]
  21. Rivas R., Mateos P. F., Martínez-Molina E., Velázquez E. ( 2005 ). Paenibacillus xylanilyticus sp. nov., an airborne xylanolytic bacterium. . Int J Syst Evol Microbiol 55, 405408. [View Article] [PubMed]
    [Google Scholar]
  22. Rochelle P. A., Fry J. C., Parkes R. J., Weightman A. J. ( 1992 ). DNA extraction for 16S rRNA gene analysis to determine genetic diversity in deep sediment communities. . FEMS Microbiol Lett 79, 5965.[PubMed] [CrossRef]
    [Google Scholar]
  23. Roh S. W., Sung Y., Nam Y. D., Chang H. W., Kim K. H., Yoon J. H., Jeon C. O., Oh H. M., Bae J. W. ( 2008 ). Arthrobacter soli sp. nov., a novel bacterium isolated from wastewater reservoir sediment. . J Microbiol 46, 4044. [View Article] [PubMed]
    [Google Scholar]
  24. Saha P., Mondal A. K., Mayilraj S., Krishnamurthi S., Bhattacharya A., Chakrabarti T. ( 2005 ). Paenibacillus assamensis sp. nov., a novel bacterium isolated from a warm spring in Assam, India. . Int J Syst Evol Microbiol 55, 25772581. [View Article] [PubMed]
    [Google Scholar]
  25. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406425.[PubMed]
    [Google Scholar]
  26. Sánchez M. M., Fritze D., Blanco A., Spröer C., Tindall B. J., Schumann P., Kroppenstedt R. M., Diaz P., Pastor F. I. ( 2005 ). Paenibacillus barcinonensis sp. nov., a xylanase-producing bacterium isolated from a rice field in the Ebro River delta. . Int J Syst Evol Microbiol 55, 935939. [View Article] [PubMed]
    [Google Scholar]
  27. Sasser M. ( 1990 ). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. . Newark, DE:: MIDI Inc.;
  28. Schaeffer A. B., Fulton M. D. ( 1933 ). A Simplified Method of Staining Endospores. . Science 77, 194. [View Article] [PubMed]
    [Google Scholar]
  29. Schleifer K. H., Kandler O. ( 1972 ). Peptidoglycan types of bacterial cell walls and their taxonomic implications. . Bacteriol Rev 36, 407477.[PubMed]
    [Google Scholar]
  30. Shida O., Takagi H., Kadowaki K., Nakamura L. K., Komagata K. ( 1997 ). Emended description of Paenibacillus amylolyticus and description of Paenibacillus illinoisensis sp. nov. and Paenibacillus chibensis sp. nov.. Int J Syst Bacteriol 47, 299306. [View Article] [PubMed]
    [Google Scholar]
  31. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 27312739. [View Article] [PubMed]
    [Google Scholar]
  32. Thompson J. D., Higgins D. G., Gibson T. J. ( 1994 ). clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. . Nucleic Acids Res 22, 46734680. [View Article] [PubMed]
    [Google Scholar]
  33. Tindall B. J. ( 1990 ). Lipid composition of Halobacterium lacusprofundi . . FEMS Microbiol Lett 66, 199202. [View Article]
    [Google Scholar]
  34. Tittsler R. P., Sandholzer L. A. ( 1936 ). The use of semi-solid agar for the detection of bacterial motility. . J Bacteriol 31, 575580.[PubMed]
    [Google Scholar]
  35. Velázquez E., de Miguel T., Poza M., Rivas R., Rosselló-Mora R., Villa T. G. ( 2004 ). Paenibacillus favisporus sp. nov., a xylanolytic bacterium isolated from cow faeces. . Int J Syst Evol Microbiol 54, 5964. [View Article] [PubMed]
    [Google Scholar]
  36. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E. & other authors ( 1987 ). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. . Int J Syst Bacteriol 37, 463464. [View Article]
    [Google Scholar]
  37. Xin H., Itoh T., Zhou P., Suzuki K., Kamekura M., Nakase T. ( 2000 ). Natrinema versiforme sp. nov., an extremely halophilic archaeon from Aibi salt lake, Xinjiang, China. . Int J Syst Evol Microbiol 50, 12971303. [View Article] [PubMed]
    [Google Scholar]
  38. Yoon J. H., Kang S. J., Yeo S. H., Oh T. K. ( 2005 ). Paenibacillus alkaliterrae sp. nov., isolated from an alkaline soil in Korea. . Int J Syst Evol Microbiol 55, 23392344. [View Article] [PubMed]
    [Google Scholar]
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