Enterococcus rivorum sp. nov., from water of pristine brooks

References

1. Carvalho M. G., Shewmaker P. L., Steigerwalt A. G., Morey R. E., Sampson A. J., Joyce K., Barrett T. J., Teixeira L. M., Facklam R. R. 2006; Enterococcus caccae sp. nov., isolated from human stools. Int J Syst Evol Microbiol 56:1505–1508 [View Article][PubMed]
   [Google Scholar]
2. Clausen E. M., Green B. L., Litsky W. 1977; Fecal streptococci: indicators of pollution. In Bacterial Indicators/Health Hazards Associated with Water (ASTM Publication 635) pp. 247–264 Edited by Hoadley A. W., Dutka B. J. Philadelphia: American Society for Testing and Materials; [View Article]
   [Google Scholar]
3. Cole J. R., Wang Q., Cardenas E., Fish J., Chai B., Farris R. J., Kulam-Syed-Mohideen A. S., McGarrell D. M., Marsh T. other authors 2009; The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37:D141–D145 [View Article][PubMed]
   [Google Scholar]
4. Edwards U., Rogall T., Blöcker H., Emde M., Böttger E. C. 1989; Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17:7843–7853 [View Article][PubMed]
   [Google Scholar]
5. Ezaki T., Hashimoto Y., Yabuuchi E. 1989; Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224–229 [View Article]
   [Google Scholar]
6. Facklam R., Wilkinson W. 1981; The family Streptococcaceae (medical aspects). In The Prokaryotes pp. 1572–1597 Edited by Starr M. P., Stolp H., Trüper H. G., Balows A., Schlegel H. G. Berlin: Springer;
   [Google Scholar]
7. Goris J., Suzuki K., De Vos P., Nakase T., Kersters K. 1998; Evaluation of a microplate DNA-DNA hybridization method compared with the initial renaturation method. Can J Microbiol 44:1148–1153 [View Article]
   [Google Scholar]
8. Katoh K., Toh H. 2008; Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 9:286–298 [View Article][PubMed]
   [Google Scholar]
9. Naser S., Thompson F. L., Hoste B., Gevers D., Vandemeulebroecke K., Cleenwerck I., Thompson C. C., Vancanneyt M., Swings J. 2005a; Phylogeny and identification of enterococci by atpA gene sequence analysis. J Clin Microbiol 43:2224–2230 [View Article][PubMed]
   [Google Scholar]
10. Naser S. M., Thompson F. L., Hoste B., Gevers D., Dawyndt P., Vancanneyt M., Swings J. 2005b; Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes. Microbiology 151:2141–2150 [View Article][PubMed]
    [Google Scholar]
11. Niemi R. M., Niemelä S. I., Bamford D. H., Hantula J., Hyvärinen T., Forsten T., Raateland A. 1993; Presumptive fecal streptococci in environmental samples characterized by one-dimensional sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Appl Environ Microbiol 59:2190–2196[PubMed]
    [Google Scholar]
12. Pot B., Vandamme P., Kersters K. 1994; Analysis of electrophoretic whole-organism protein fingerprints. In Modern Microbiological Methods: Chemical Methods in Prokaryotic Systematics pp. 493–521 Edited by Goodfellow M., O’Donnell A. G. Chichester: Wiley;
    [Google Scholar]
13. Schleifer K. H., Kilpper-Bälz R. 1984; Transfer of Streptococcus faecalis and Streptococcus faecium to the genus Enterococcus nom. rev. as Enterococcus faecalis comb. nov. and Enterococcus faecium comb. nov.. Int J Syst Bacteriol 34:31–34 [View Article]
    [Google Scholar]
14. Sistek V., Maheux A. F., Boissinot M., Bernard K. A., Cantin P., Cleenwerck I., De Vos P., Bergeron M. G. 2012; Enterococcus ureasiticus sp. nov. and Enterococcus quebecensis sp. nov., isolated from water. Int J Syst Evol Microbiol 62:1314–1320 [View Article][PubMed]
    [Google Scholar]
15. Staden R., Beal K. F., Bonfield J. K. 2000; The Staden package, 1998. Methods Mol Biol 132:115–130[PubMed]
    [Google Scholar]
16. Stamatakis A. 2006; RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690 [View Article][PubMed]
    [Google Scholar]
17. Švec P., Devriese L. A. 2009; Genus I. Enterococcus (ex Thiercelin and Jouhaud 1903) Schleifer and Kilpper-Bälz 1984, 32^VP . In Bergey’s Manual of Systematic Bacteriology, 2nd edn. vol. 3 pp. 594–607 Edited by De Vos P., Garrity G. M., Jones D., Krieg N. R., Ludwig W., Rainey F. A., Schleifer K. H., Whitman W. B. New York: Springer;
    [Google Scholar]
18. Švec P., Devriese L. A., Sedláček I., Baele M., Vancanneyt M., Haesebrouck F., Swings J., Doškař J. 2001; Enterococcus haemoperoxidus sp. nov. and Enterococcus moraviensis sp. nov., isolated from water. Int J Syst Evol Microbiol 51:1567–1574[PubMed]
    [Google Scholar]
19. Švec P., Vancanneyt M., Devriese L. A., Naser S. M., Snauwaert C., Lefebvre K., Hoste B., Swings J. 2005; Enterococcus aquimarinus sp. nov., isolated from sea water. Int J Syst Evol Microbiol 55:2183–2187 [View Article][PubMed]
    [Google Scholar]
20. Švec P., Vancanneyt M., Sedláček I., Naser S. M., Snauwaert C., Lefebvre K., Hoste B., Swings J. 2006; Enterococcus silesiacus sp. nov. and Enterococcus termitis sp. nov.. Int J Syst Evol Microbiol 56:577–581 [View Article][PubMed]
    [Google Scholar]
21. Švec P., Nováková D., Zácková L., Kukletová M., Sedláček I. 2008; Evaluation of (GTG)₅-PCR for rapid identification of Streptococcus mutans . Antonie van Leeuwenhoek 94:573–579 [View Article][PubMed]
    [Google Scholar]
22. Švec P., Vandamme P., Bryndová H., Holochová P., Kosina M., Mašlaňová I., Sedláček I. 2012; Enterococcus plantarum sp. nov., isolated from plants. Int J Syst Evol Microbiol 62:1499–1505 [View Article][PubMed]
    [Google Scholar]
23. Weisburg W. G., Barns S. M., Pelletier D. A., Lane D. J. 1991; 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173:697–703[PubMed]
    [Google Scholar]