Reassessment of the status of Streptomyces setonii and reclassification of Streptomyces fimicarius as a later synonym of Streptomyces setonii and Streptomyces albovinaceus as a later synonym of Streptomyces globisporus based on combined 16S rRNA/gyrB gene sequence analysis

References

1. Bérdy J. 2005; Bioactive microbial metabolites. J Antibiot (Tokyo) 58:1–26 [View Article][PubMed]
   [Google Scholar]
2. Clayton R. A., Sutton G., Hinkle P. S. Jr, Bult C., Fields C. 1995; Intraspecific variation in small-subunit rRNA sequences in GenBank: why single sequences may not adequately represent prokaryotic taxa. Int J Syst Bacteriol 45:595–599 [View Article][PubMed]
   [Google Scholar]
3. Duché J. 1934; Les actinomyces du groupe albus. In Encyclopédie Mycologique, vol. 6, pp. 1–375. Paris: Paul LeChevalier et fils (in French)..
   [Google Scholar]
4. Euzéby J. P. 2011 List of Prokaryotic Names with Standing in Nomenclature http://www.bacterio.cict.fr
   [Google Scholar]
5. Everest G. J., Meyers P. R. 2009; The use of gyrB sequence analysis in the phylogeny of the genus Amycolatopsis . Antonie van Leeuwenhoek 95:1–11 [View Article][PubMed]
   [Google Scholar]
6. Han J. H., Hwang I. C., Cho S. H., Jang C., Kim N. G., Yu S. H., Yu Y. M., Kim S. B. 2008; Description of Streptomyces neopeptinius sp. nov., an actinobacterium with broad spectrum antifungal activities. J Microbiol 46:295–299 [View Article][PubMed]
   [Google Scholar]
7. Han J. H., Cho M. H., Kim S. B. 2012; Ribosomal and protein coding gene based multigene phylogeny on the family Streptomycetaceae . Syst Appl Microbiol 35:1–6 [View Article][PubMed]
   [Google Scholar]
8. Hannula M., Hänninen M. L. 2007; Phylogenetic analysis of Helicobacter species based on partial gyrB gene sequences. Int J Syst Evol Microbiol 57:444–449 [View Article][PubMed]
   [Google Scholar]
9. Hatano K., Nishii T., Kasai H. 2003; Taxonomic re-evaluation of whorl-forming Streptomyces (formerly Streptoverticillium) species by using phenotypes, DNA–DNA hybridization and sequences of gyrB, and proposal of Streptomyces luteireticuli (ex Katoh and Arai 1957) corrig., sp. nov., nom. rev.. Int J Syst Evol Microbiol 53:1519–1529 [View Article][PubMed]
   [Google Scholar]
10. Healy F. G., Lambert D. H. 1991; Relationships among Streptomyces spp. causing potato scab. Int J Syst Bacteriol 41:479–482 [View Article]
    [Google Scholar]
11. Huang W. M. 1996; Bacterial diversity based on type II DNA topoisomerase genes. Annu Rev Genet 30:79–107 [View Article][PubMed]
    [Google Scholar]
12. Jukes T. H., Cantor C. R. 1969; Evolution of protein molecules. In Mammalian Protein Metabolism vol. 3 pp. 21–132 Edited by Munro H. N. New York: Academic Press;
    [Google Scholar]
13. Kämpfer P., Kroppenstedt R. M., Dott W. 1991; A numerical classification of the genera Streptomyces and Streptoverticillium using miniaturized physiological tests. J Gen Microbiol 137:1831–1891 [View Article]
    [Google Scholar]
14. Kasai H., Tamura T., Harayama S. 2000; Intrageneric relationships among Micromonospora species deduced from gyrB-based phylogeny and DNA relatedness. Int J Syst Evol Microbiol 50:127–134 [View Article][PubMed]
    [Google Scholar]
15. Kim S. B., Lonsdale J., Seong C. N., Goodfellow M. 2003; Streptacidiphilus gen. nov., acidophilic actinomycetes with wall chemotype I and emendation of the family Streptomycetaceae (Waksman and Henrici (1943)^AL) emend. Rainey et al. 1997. Antonie van Leeuwenhoek 83:107–116 [View Article][PubMed]
    [Google Scholar]
16. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120 [View Article][PubMed]
    [Google Scholar]
17. Kirby B. M., Everest G. J., Meyers P. R. 2010; Phylogenetic analysis of the genus Kribbella based on the gyrB gene: proposal of a gyrB-sequence threshold for species delineation in the genus Kribbella . Antonie van Leeuwenhoek 97:131–142 [View Article][PubMed]
    [Google Scholar]
18. Krasil’nikov N. A. 1941 In Guide to the Bacteria and Actinomycetes pp. 1–158 Moscow: Akad. Nauk. SSSR; (in Russian)
    [Google Scholar]
19. Kudrina E. S. 1957; Characteristics of antagonistic actinomycetes of the Helvolus series. In Problems in the Classification of Actinomycetes – Antagonists pp. 77–100 Edited by Gauze G. F., Preobrazhenskaya T. P., Kudrina E. S., Blinov N. O., Ryabova I. D., Sveshnikova M. A. Moscow: State Publishing House of Medical Literature, Medgiz.; (in Russian)
    [Google Scholar]
20. Labeda D. P. 1996; DNA relatedness among verticil-forming Streptomyces species (formerly Streptoverticillium species). Int J Syst Bacteriol 46:699–703 [View Article]
    [Google Scholar]
21. Labeda D. P. 2011; Multilocus sequence analysis of phytopathogenic species of the genus Streptomyces . Int J Syst Evol Microbiol 61:2525–2531 [View Article][PubMed]
    [Google Scholar]
22. Lanoot B., Vancanneyt M., Cleenwerck I., Wang L., Li W., Liu Z., Swings J. 2002; The search for synonyms among streptomycetes by using SDS-PAGE of whole-cell proteins. Emendation of the species Streptomyces aurantiacus, Streptomyces cacaoi subsp. cacaoi, Streptomyces caeruleus and Streptomyces violaceus . Int J Syst Evol Microbiol 52:823–829 [View Article][PubMed]
    [Google Scholar]
23. Lanoot B., Vancanneyt M., Van Schoor A., Liu Z., Swings J. 2005; Reclassification of Streptomyces nigrifaciens as a later synonym of Streptomyces flavovirens; Streptomyces citreofluorescens, Streptomyces chrysomallus subsp. chrysomallus and Streptomyces fluorescens as later synonyms of Streptomyces anulatus; Streptomyces chibaensis as a later synonym of Streptomyces corchorusii; Streptomyces flaviscleroticus as a later synonym of Streptomyces minutiscleroticus; and Streptomyces lipmanii, Streptomyces griseus subsp. alpha, Streptomyces griseus subsp. cretosus and Streptomyces willmorei as later synonyms of Streptomyces microflavus . Int J Syst Evol Microbiol 55:729–731 [View Article][PubMed]
    [Google Scholar]
24. Lapage S. P., Sneath P. H. A., Lessel E. F., Skerman V. B. D., Seeliger H. P. R., Clark W. A. (editors) 1992 International Code of Nomenclature of Bacteria (1990 Revision). Bacteriological Code Washington, DC: American Society for Microbiology;
    [Google Scholar]
25. Liu Z., Shi Y., Zhang Y., Zhou Z., Lu Z., Li W., Huang Y., Rodríguez C., Goodfellow M. 2005; Classification of Streptomyces griseus (Krainsky 1914) Waksman and Henrici 1948 and related species and the transfer of ‘Microstreptospora cinerea’ to the genus Streptomyces as Streptomyces yanii sp. nov.. Int J Syst Evol Microbiol 55:1605–1610 [View Article][PubMed]
    [Google Scholar]
26. Locci R. 1989; Streptomycetes and related genera. In Bergey’s Manual of Systematic Bacteriology vol. 4 pp. 2451–2452 Edited by Williams S. T., Sharpe M. E., Holt J. G. Baltimore: Williams & Wilkins;
    [Google Scholar]
27. Millard W. A., Burr S. 1926; A study of twenty-four strains of Actinomyces and their relation to types of common scab of potato. Ann Appl Biol 13:580–644 [View Article]
    [Google Scholar]
28. Park M. S., Jung S. R., Lee M. S., Kim K. O., Do J. O., Lee K. H., Kim S. B., Bae K. S. 2005; Isolation and characterization of bacteria associated with two sand dune plant species, Calystegia soldanella and Elymus mollis . J Microbiol 43:219–227[PubMed]
    [Google Scholar]
29. Parkinson N., Cowie C., Heeney J., Stead D. 2009; Phylogenetic structure of Xanthomonas determined by comparison of gyrB sequences. Int J Syst Evol Microbiol 59:264–274 [View Article][PubMed]
    [Google Scholar]
30. Pridham T. G., Hesseltine C. W., Benedict R. G. 1958; A guide for the classification of streptomycetes according to selected groups; placement of strains in morphological sections. Appl Microbiol 6:52–79[PubMed]
    [Google Scholar]
31. Rong X., Huang Y. 2010; Taxonomic evaluation of the Streptomyces griseus clade using multilocus sequence analysis and DNA–DNA hybridization, with proposal to combine 29 species and three subspecies as 11 genomic species. Int J Syst Evol Microbiol 60:696–703 [View Article][PubMed]
    [Google Scholar]
32. Shirling E. B., Gottlieb D. 1968; Cooperative description of type cultures of Streptomyces. III. Additional species descriptions from first and second studies. Int J Syst Bacteriol 18:279–392 [View Article]
    [Google Scholar]
33. Shirling E. B., Gottlieb D. 1969; Cooperative description of type cultures of Streptomyces. IV. Species descriptions from the second, third and fourth studies. Int J Syst Bacteriol 19:391–512 [View Article]
    [Google Scholar]
34. Stackebrandt E., Ebers J. 2006; Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33:152–155
    [Google Scholar]
35. Suzuki M., Nakagawa Y., Harayama S., Yamamoto S. 1999; Phylogenetic analysis of genus Marinilabilia and related bacteria based on the amino acid sequences of GyrB and emended description of Marinilabilia salmonicolor with Marinilabilia agarovorans as its subjective synonym. Int J Syst Bacteriol 49:1551–1557 [View Article][PubMed]
    [Google Scholar]
36. Waksman S. A. 1953 Guide to the Classification and Identification of the Actinomycetes and their Antibiotics pp. 1–162 Edited by Waksman S. A., Lechevalier H. A. Baltimore: Williams & Wilkins; [View Article]
    [Google Scholar]
37. Waksman S. A. 1959; Strain specificity and production of antibiotic substances. X. Characterization and classification of species within the Streptomyces griseus group. Proc Natl Acad Sci U S A 45:1043–1047 [View Article][PubMed]
    [Google Scholar]
38. Waksman S. A., Henrici A. T. 1948; Family III. Streptomycetaceae Waksman and Henrici, 1943. In Bergey’s Manual of Determinative Bacteriology, 6th edn. pp. 929–980 Edited by Breed R. S., Murray E. G. D., Hitchens A. P. Baltimore: Williams & Wilkins;
    [Google Scholar]
39. Wang L. T., Lee F. L., Tai C. J., Kasai H. 2007; Comparison of gyrB gene sequences, 16S rRNA gene sequences and DNA–DNA hybridization in the Bacillus subtilis group. Int J Syst Evol Microbiol 57:1846–1850 [View Article][PubMed]
    [Google Scholar]
40. Yamamoto S., Bouvet P. J. M., Harayama S. 1999; Phylogenetic structures of the genus Acinetobacter based on gyrB sequences: comparison with the grouping by DNA–DNA hybridization. Int J Syst Bacteriol 49:87–95 [View Article][PubMed]
    [Google Scholar]