Rhizobium subbaraonis sp. nov., an endolithic bacterium isolated from beach sand

References

1. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. ( 1990 ). Basic local alignment search tool. . J Mol Biol 215, 403–410.[PubMed] [CrossRef]
   [Google Scholar]
2. Bibi F., Chung E. J., Khan A., Jeon C. O., Chung Y. R. ( 2012 ). Rhizobium halophytocola sp. nov., isolated from the root of a coastal dune plant. . Int J Syst Evol Microbiol 62, 1997–2003. [View Article] [PubMed]
   [Google Scholar]
3. Brosius J., Palmer M. L., Kennedy P. J., Noller H. F. ( 1978 ). Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli . . Proc Natl Acad Sci U S A 75, 4801–4805. [View Article] [PubMed]
   [Google Scholar]
4. Cappuccino J. G., Sherman N. ( 1998 ). Microbiology – A Laboratory Manual, , 5th edn.. California:: Benjamin Cummings Science Publishing;.
   [Google Scholar]
5. Chun J., Lee J.-H., Jung Y., Kim M., Kim S., Kim B. K., Lim Y. W. ( 2007 ). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. . Int J Syst Evol Microbiol 57, 2259–2261. [View Article] [PubMed]
   [Google Scholar]
6. Gao J. L., Sun J. G., Li Y., Wang E. T., Chen W. X. ( 1994 ). Numerical taxonomy and DNA relatedness of tropical rhizobia isolated from Hainan Province, China. . Int J Syst Evol Microbiol 44, 151–158.
   [Google Scholar]
7. Imhoff J. F., Pfennig N. ( 2001 ). Thioflavicoccus mobilis gen. nov., sp. nov., a novel purple sulfur bacterium with bacteriochlorophyll b . . Int J Syst Evol Microbiol 51, 105–110.[PubMed]
   [Google Scholar]
8. Imhoff J. F., Süling J., Petri R. ( 1998 ). Phylogenetic relationships among the Chromatiaceae, their taxonomic reclassification and description of the new genera Allochromatium, Halochromatium, Isochromatium, Marichromatium, Thiococcus, Thiohalocapsa and Thermochromatium . . Int J Syst Bacteriol 48, 1129–1143. [View Article] [PubMed]
   [Google Scholar]
9. Kates M. ( 1972 ). Techniques of Lipidology. New York:: Elsevier;.
   [Google Scholar]
10. Kates M. ( 1986 ). Influence of salt concentration on membrane lipids of halophilic bacteria. . FEMS Microbiol Lett 39, 95–101. [View Article]
    [Google Scholar]
11. Kaur J., Verma M., Lal R. ( 2011 ). Rhizobium rosettiformans sp. nov., isolated from a hexachlorocyclohexane dump site, and reclassification of Blastobacter aggregatus Hirsch and Muller 1986 as Rhizobium aggregatum comb. nov.. Int J Syst Evol Microbiol 61, 1218–1225. [View Article] [PubMed]
    [Google Scholar]
12. Lakshmi K. V. N. S., Sasikala Ch., Ashok Kumar G. V., Chandrasekaran R., Ramana ChV. ( 2011 ). Phaeovibrio sulfidiphilus gen. nov., sp. nov., phototrophic alphaproteobacteria isolated from brackish water. . Int J Syst Evol Microbiol 61, 828–833. [View Article] [PubMed]
    [Google Scholar]
13. Lane D. J., Pace B., Olsen G. J., Stahl D. A., Sogin M. L., Pace N. R. ( 1985 ). Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. . Proc Natl Acad Sci U S A 82, 6955–6959. [View Article] [PubMed]
    [Google Scholar]
14. Lányí B. ( 1987 ). Classical and rapid identification methods for medically important bacteria. . Methods Microbiol 19, 1–67. [View Article]
    [Google Scholar]
15. López-López A., Rogel-Hernández M. A., Barois I., Ortiz Ceballos A. I., Martínez J., Ormeño-Orrillo E., Martinez-Romero E. ( 2012 ). Rhizobium grahamii sp. nov., from nodules of Dalea leporina, Leucaena leucocephala and Clitoria ternatea, and Rhizobium mesoamericanum sp. nov., from nodules of Phaseolus vulgaris, siratro, cowpea and Mimosa pudica . . Int J Syst Evol Microbiol 62, 2264–2271. [View Article] [PubMed]
    [Google Scholar]
16. Marmur J. ( 1961 ). A procedure for the isolation of deoxyribonucleic acid from micro-organisms. . J Mol Biol 3, 208–218. [View Article]
    [Google Scholar]
17. Martens M., Delaere M., Coopman R., De Vos P., Gillis M., Willems A. ( 2007 ). Multilocus sequence analysis of Ensifer and related taxa. . Int J Syst Evol Microbiol 57, 489–503. [View Article] [PubMed]
    [Google Scholar]
18. McNamara C. J., Perry T. D. IV, Bearce K. A., Hernandez-Duque G., Mitchell R. ( 2006 ). Epilithic and endolithic bacterial communities in limestone from a Maya archaeological site. . Microb Ecol 51, 51–64. [View Article] [PubMed]
    [Google Scholar]
19. Mesbah M., Premachandran U., Whitman W. B. ( 1989 ). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. . Int J Syst Bacteriol 39, 159–167. [View Article]
    [Google Scholar]
20. Oren A., Duker S., Ritter S. ( 1996 ). The polar lipid composition of Walsby’s square bacterium. . FEMS Microbiol Lett 138, 135–140. [View Article]
    [Google Scholar]
21. Panday D., Schumann P., Das S. K. ( 2011 ). Rhizobium pusense sp. nov., isolated from the rhizosphere of chickpea (Cicer arietinum L.). . Int J Syst Evol Microbiol 61, 2632–2639. [View Article] [PubMed]
    [Google Scholar]
22. Pulawska J., Willems A., Sobiczewski P. ( 2012 ). Rhizobium skierniewicense sp. nov., isolated from tumours on chrysanthemum and cherry plum. . Int J Syst Evol Microbiol 62, 895–899. [View Article] [PubMed]
    [Google Scholar]
23. Qin W., Deng Z. S., Xu L., Wang N. N., Wei G. H. ( 2012 ). Rhizobium helanshanense sp. nov., a bacterium that nodulates Sphaerophysa salsula (Pall.) DC. in China. . Arch Microbiol. [View Article] [PubMed]
    [Google Scholar]
24. Ribeiro R. A., Rogel M. A., López-López A., Ormeño-Orrillo E., Barcellos F. G., Martínez J., Thompson F. L., Martínez-Romero E., Hungria M. ( 2012 ). Reclassification of Rhizobium tropici type A strains as Rhizobium leucaenae sp. nov.. Int J Syst Evol Microbiol 62, 1179–1184. [View Article] [PubMed]
    [Google Scholar]
25. Sanger F., Nicklen S., Coulson A. R. ( 1977 ). DNA sequencing with chain-terminating inhibitors. . Proc Natl Acad Sci U S A 74, 5463–5467. [View Article] [PubMed]
    [Google Scholar]
26. Sasikala K., Ramana C. V., Raghuveer Rao P., Subrahmanyam M. ( 1990 ). Photoproduction of hydrogen, nitrogenase and hydrogenase activities of free and immobilized whole cells of Rhodobacter sphaeroides OU 001. . FEMS Microbiol Lett 72, 23–28. [View Article]
    [Google Scholar]
27. Sasser M. ( 1990 ). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. . Newark, DE:: MIDI Inc.;
28. Tamaoka J., Katayama-Fujimura Y., Kuraishi H. ( 1983 ). Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. . J Appl Microbiol 54, 31–36. [View Article]
    [Google Scholar]
29. Tamura K., Dudley J., Nei M., Kumar S. ( 2007 ). mega4: Molecular Evolutionary Genetics Analysis (mega) software version 4.0. . Mol Biol Evol 24, 1596–1599. [View Article] [PubMed]
    [Google Scholar]
30. Tindall B. J. ( 1990 ). Lipid composition of Halobacterium lacusprofundi . . FEMS Microbiol Lett 66, 199–202. [View Article]
    [Google Scholar]
31. Tindall B. J., Tomlinson G. A., Hochstein L. I. ( 1987 ). Polar lipid composition of a new halobacterium. . Syst Appl Microbiol 9, 6–8. [View Article] [PubMed]
    [Google Scholar]
32. Tourova T. P., Antonov A. S. ( 1988 ). Identification of microorganisms by rapid DNA–DNA hybridization. . Meth Microbiol 19, 333–355. [View Article]
    [Google Scholar]
33. Walker J. J., Spear J. R., Pace N. R. ( 2005 ). Geobiology of a microbial endolithic community in the Yellowstone geothermal environment. . Nature 434, 1011–1014. [View Article] [PubMed]
    [Google Scholar]
34. Widdel F. ( 1983 ). Methods for enrichment and pure culture isolation of filamentous gliding sulfate-reducing bacteria. . Arch Microbiol 134, 282–285. [View Article]
    [Google Scholar]
35. Xu P., Li W. J., Tang S. K., Zhang Y. Q., Chen G. Z., Chen H. H., Xu L. H., Jiang C. L. ( 2005 ). Naxibacter alkalitolerans gen. nov., sp. nov., a novel member of the family ‘Oxalobacteraceae’ isolated from China. . Int J Syst Evol Microbiol 55, 1149–1153. [View Article] [PubMed]
    [Google Scholar]
36. Yao L., Shen Y. Y., Zhan J. P., Xu W., Cui G. L., Wei G. ( 2012 ). Rhizobium taibaishanense sp. nov., a novel species isolated from root nodule of Kummerowia striata in China. . Int J Syst Evol Microbiol 62, 335–341. [View Article] [PubMed]
    [Google Scholar]
37. Zhang X., Li B., Wang H., Sui X., Ma X., Hong Q., Jiang R. ( 2012 ). Rhizobium petrolearium sp. nov., isolated from oil-contaminated soil. . Int J Syst Evol Microbiol 62, 1871–1876. [View Article] [PubMed]
    [Google Scholar]