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Volume 63, Issue Pt_3

sp. nov., isolated from a tidal flat sediment, and emended descriptions of the genus and Free

Abstract

A Gram-stain-negative, aerobic, rod-shaped, non-motile and orange-coloured marine bacterium, YH207, was isolated from a tidal flat at Yeongheung-do on the coast of the Yellow Sea, Korea. 16S rRNA gene sequence analysis revealed that strain YH207 was affiliated with the family and showed highest similarity to IC156 (95.4 %). Growth was observed at 11–36 °C, at pH 6.5–10.0 and with 0.4–7.0 % NaCl. The predominant cellular fatty acids when grown at 20 °C were iso-C (44.2 %), iso-C G (34.3 %), iso-C 3-OH (8.7 %) and summed feature 3 (comprising iso-C 2-OH and/or Cω7; 2.3 %). The major respiratory quinone was MK-6. Phosphatidylethanolamine, phosphatidylglycerol, three unidentified lipids, three unidentified aminophospholipids, one unidentified phospholipid, four unidentified aminolipids and three unidentified glycolipids were identified as major polar lipids. The DNA G+C content was 34.3 mol%. On the basis of the data from our polyphasic taxonomic study, strain YH207 should be classified in a novel species in the genus , for which the name sp. nov. is proposed. The type strain is YH207 ( = KCCM 42331  = JCM 14063). Emended descriptions of the genus and Bowman 2003 are also given.

  • Published Online:
Funding
This study was supported by the:
  • Marine & Extreme Genome Research Center Program
  • Marine BioResources Bank Program
  • Ministry of Land, Transport and Maritime Affairs, Korea
© 2013 IUMS
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2013-03-01
2024-04-25
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References

  1. Bowman J. P. ( 2000 ). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov.. Int J Syst Evol Microbiol 50, 1861–1868.[PubMed]
    [Google Scholar]
  2. Bowman J. P., McCammon S. A., Brown J. L., McMeekin T. A. ( 1998 ). Glaciecola punicea gen. nov., sp. nov. and Glaciecola pallidula gen. nov., sp. nov.: psychrophilic bacteria from Antarctic sea-ice habitats. . Int J Syst Bacteriol 48, 1213–1222. [View Article]
    [Google Scholar]
  3. Bowman J. P., Nichols C. M., Gibson J. A. E. ( 2003 ). Algoriphagus ratkowskyi gen. nov., sp. nov., Brumimicrobium glaciale gen. nov., sp. nov., Cryomorpha ignava gen. nov., sp. nov. and Crocinitomix catalasitica gen. nov., sp. nov., novel flavobacteria isolated from various polar habitats. . Int J Syst Evol Microbiol 53, 1343–1355. [View Article] [PubMed]
    [Google Scholar]
  4. Collins M. D. ( 1985 ). Isoprenoid quinone analysis in bacterial classification and identification. . In Chemical Methods in Bacterial Systematics, pp. 267–287. Edited by Goodfellow M., Minnikin D. E. . London:: Academic Press;.
     [Google Scholar]
  5. Consden R., Gordon A. H. ( 1948 ). Effect of salt on partition chromatograms. . Nature 162, 180–181. [View Article] [PubMed]
    [Google Scholar]
  6. Dittmer J. C. F., Lester R. L. ( 1964 ). A simple specific spray for the detection of phospholipids on thin-layer chromatograms. . J Lipid Res 15, 126–127.[PubMed]
    [Google Scholar]
  7. Felsenstein J. ( 1981 ). Evolutionary trees from DNA sequences: a maximum likelihood approach. . J Mol Evol 17, 368–376. [View Article] [PubMed]
    [Google Scholar]
  8. Felsenstein J. ( 1985 ). Confidence limits on phylogenies: an approach using the bootstrap. . Evolution 39, 783–791. [View Article]
    [Google Scholar]
  9. Fitch W. M. ( 1971 ). Toward defining the course of evolution: minimum change for a specific tree topology. . Syst Zool 20, 406–416. [View Article]
    [Google Scholar]
  10. Garrity G. M., Holt J. G. ( 2001 ). The road map to the Manual . . In Bergey’s Manual of Systematic Bacteriology, , 2nd edn., vol. 1, pp. 119–166. Edited by Boone D. R., Castenholz R. W., Garrity G. M. . New York:: Springer;. [View Article]
    [Google Scholar]
  11. Hofherr L. A., Hammond E. G., Glatz B. A., Ross P. F. ( 1983 ). Relation of growth temperature to fatty acid composition of Propionibacterium strains. . J Dairy Sci 66, 1622–1629. [View Article]
    [Google Scholar]
  12. Jacin H., Mishkin A. R. ( 1965 ). Separation of carbohydrates on borate-impregnated silica gel G plates. . J Chromatogr A 18, 170–173. [View Article]
    [Google Scholar]
  13. Kämpfer P., Buczolits S., Albrecht A., Busse H.-J., Stackebrandt E. ( 2003 ). Towards a standardized format for the description of a novel species (of an established genus): Ochrobactrum gallinifaecis sp. nov.. Int J Syst Evol Microbiol 53, 893–896. [View Article] [PubMed]
    [Google Scholar]
  14. Kwon K. K., Lee H.-S., Yang S.-H., Kim S.-J. ( 2005 ). Kordiimonas gwangyangensis gen. nov., sp. nov., a marine bacterium isolated from marine sediments that forms a distinct phyletic lineage (Kordiimonadales ord. nov.) in the ‘Alphaproteobacteria’. . Int J Syst Evol Microbiol 55, 2033–2037. [View Article] [PubMed]
    [Google Scholar]
  15. Lau K. W. K., Ng C. Y. M., Ren J., Lau S. C. L., Qian P.-Y., Wong P.-K., Lau T. C., Wu M. ( 2005 ). Owenweeksia hongkongensis gen. nov., sp. nov., a novel marine bacterium of the phylum ‘Bacteroidetes’. . Int J Syst Evol Microbiol 55, 1051–1057. [View Article] [PubMed]
    [Google Scholar]
  16. Lau K. W. K., Ren J., Wai N. L. M., Qian P.-Y., Wong P.-K., Wu M. ( 2006 ). Lishizhenia caseinilytica gen. nov., sp. nov., a marine bacterium of the phylum Bacteroidetes . . Int J Syst Evol Microbiol 56, 2317–2322. [View Article] [PubMed]
    [Google Scholar]
  17. Lee D.-H., Choi E.-K., Moon S.-R., Ahn S., Lee Y. S., Jung J. S., Jeon C. O., Whang K.-S., Kahng H.-Y. ( 2010 ). Wandonia haliotis gen. nov., sp. nov., a marine bacterium of the family Cryomorphaceae, phylum Bacteroidetes . . Int J Syst Evol Microbiol 60, 510–514. [View Article] [PubMed]
    [Google Scholar]
  18. Ludwig W., Euzéby J., Whitman W. B. ( 2010 ). Taxonomic outlines of the phyla Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes . . In Bergey’s Manual of Systematic Bacteriology, , 2nd edn., vol. 4, pp. 21–24. Edited by Krieg N. R., Staley J. T., Brown D. R., Hedlund B. P., Paster B. J., Ward N. L., Ludwig W., Whitman W. B. . New York:: Springer;. [View Article]
    [Google Scholar]
  19. Marr A. G., Ingraham J. L. ( 1962 ). Effect of temperature on the composition of fatty acids in Escherichia coli . . J Bacteriol 84, 1260–1267.[PubMed]
    [Google Scholar]
  20. Minnikin D. E., O’Donnell A. G., Goodfellow M., Alderson G., Athalye M., Schaal A., Parlett J. H. ( 1984 ). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. . J Microbiol Methods 2, 233–241. [View Article]
    [Google Scholar]
  21. Muramatsu Y., Takahashi M., Kamakura Y., Suzuki K., Nakagawa Y. ( 2012 ). Salinirepens amamiensis gen. nov., sp. nov., a member of the family Cryomorphaceae isolated from seawater, and emended descriptions of the genera Fluviicola and Wandonia . . Int J Syst Evol Microbiol 62, 2235–2240. [View Article] [PubMed]
    [Google Scholar]
  22. Oh H.-M., Lee K., Cho J.-C. ( 2009 ). Lewinella antarctica sp. nov., a marine bacterium isolated from Antarctic seawater. . Int J Syst Evol Microbiol 59, 65–68. [View Article] [PubMed]
    [Google Scholar]
  23. O’Sullivan L. A., Rinna J., Humphreys G., Weightman A. J., Fry J. C. ( 2005 ). Fluviicola taffensis gen. nov., sp. nov., a novel freshwater bacterium of the family Cryomorphaceae in the phylum ‘Bacteroidetes’. . Int J Syst Evol Microbiol 55, 2189–2194. [View Article] [PubMed]
    [Google Scholar]
  24. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406–425.[PubMed]
    [Google Scholar]
  25. Sasser M. ( 1990 ). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
  26. Smibert R. M., Krieg N. R. ( 1994 ). Phenotypic characterization. . In Methods for General and Molecular Bacteriology, pp. 607–654. Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. . Washington, DC:: American Society for Microbiology;.
     [Google Scholar]
  27. Sohn J. H., Kwon K. K., Kang J.-H., Jung H.-B., Kim S.-J. ( 2004 ). Novosphingobium pentaromativorans sp. nov., a high-molecular-mass polycyclic aromatic hydrocarbon-degrading bacterium isolated from estuarine sediment. . Int J Syst Evol Microbiol 54, 1483–1487. [View Article] [PubMed]
    [Google Scholar]
  28. Stackebrandt E., Liesack W. ( 1993 ). Nucleic acids and classification. . In Handbook of New Bacterial Systematics, pp. 158–160. Edited by Goodfellow M., O’Donnell A. G. . London:: Academic Press;.
     [Google Scholar]
  29. Yang S.-H., Kwon K. K., Lee H.-S., Kim S.-J. ( 2006 ). Shewanella spongiae sp. nov., isolated from a marine sponge. . Int J Syst Evol Microbiol 56, 2879–2882. [View Article] [PubMed]
    [Google Scholar]
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Brumimicrobium mesophilum sp. nov., isolated from a tidal flat sediment, and emended descriptions of the genus Brumimicrobium and Brumimicrobium glaciale
Int J Syst Evol Microbiol 63, 1105 (2013); https://doi.org/10.1099/ijs.0.042614-0
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