Lactobacillus porcinae sp. nov., isolated from traditional Vietnamese nem chua

References

1. De Bruyne K., Franz C. M. A. P., Vancanneyt M., Schillinger U., Mozzi F., de Valdez G. F., De Vuyst L., Vandamme P. ( 2008 ). Pediococcus argentinicus sp. nov. from Argentinean fermented wheat flour and identification of Pediococcus species by pheS, rpoA and atpA sequence analysis. . Int J Syst Evol Microbiol 58, 2909–2916. [View Article] [PubMed]
   [Google Scholar]
2. Ezaki T., Hashimoto Y., Yabuuchi E. ( 1989 ). Fluorometric deoxyribonucleic acid–deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. . Int J Syst Bacteriol 39, 224–229. [View Article]
   [Google Scholar]
3. Gevers D., Huys G., Swings J. ( 2001 ). Applicability of rep-PCR fingerprinting for identification of Lactobacillus species. . FEMS Microbiol Lett 205, 31–36. [View Article] [PubMed]
   [Google Scholar]
4. Ludwig W., Strunk O., Westram R., Richter L., Meier H., Yadhukumar, Buchner A., Lai T., Steppi S. & other authors ( 2004 ). arb: a software environment for sequence data. . Nucleic Acids Res 32, 1363–1371. [View Article] [PubMed]
   [Google Scholar]
5. Marmur J. ( 1961 ). A procedure for the isolation of deoxyribonucleic acid from micro-organisms. . J Mol Biol 3, 208–218. [View Article]
   [Google Scholar]
6. Mesbah M., Premachandran U., Whitman W. B. ( 1989 ). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. . Int J Syst Bacteriol 39, 159–167. [View Article]
   [Google Scholar]
7. Morlon-Guyot J., Guyot J. P., Pot B., De Haut I. J., Raimbault M. ( 1998 ). Lactobacillus manihotivorans sp. nov., a new starch-hydrolysing lactic acid bacterium isolated during cassava sour starch fermentation. . Int J Syst Bacteriol 48, 1101–1109. [View Article] [PubMed]
   [Google Scholar]
8. Naser S. M., Thompson F. L., Hoste B., Gevers D., Dawyndt P., Vancanneyt M., Swings J. ( 2005a ). Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes. . Microbiology 151, 2141–2150. [View Article] [PubMed]
   [Google Scholar]
9. Naser S. M., Vancanneyt M., De Graef E., Devriese L. A., Snauwaert C., Lefebvre K., Hoste B., Švec P., Decostere A. & other authors ( 2005b ). Enterococcus canintestini sp. nov., from faecal samples of healthy dogs. . Int J Syst Evol Microbiol 55, 2177–2182. [View Article] [PubMed]
   [Google Scholar]
10. Naser S. M., Dawyndt P., Hoste B., Gevers D., Vandemeulebroecke K., Cleenwerck I., Vancanneyt M., Swings J. ( 2007 ). Identification of lactobacilli by pheS and rpoA gene sequence analyses. . Int J Syst Evol Microbiol 57, 2777–2789. [View Article] [PubMed]
    [Google Scholar]
11. Nguyen H. T., Elegado F. B., Librojo-Basilio N. T., Mabesa R. C., Dizon E. I. ( 2010 ). Isolation and characterisation of selected lactic acid bacteria for improved processing of Nem chua, a traditional fermented meat from Vietnam. . Benef Microbes 1, 67–74. [View Article] [PubMed]
    [Google Scholar]
12. Nguyen T. L. D., Van Hoorde K., Cnockaert M., De Brandt E., De Bruyne K., Le T. B., Vandamme P. ( 2013 ). A culture-dependent and -independent approach for the identification of lactic acid bacteria associated with the production of nem chua, a Vietnamese fermented meat product. . Food Res Int 50, 232–240. [CrossRef]
    [Google Scholar]
13. Pruesse E., Quast C., Knittel K., Fuchs B. M., Ludwig W., Peplies J., Glöckner F. O. ( 2007 ). SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. . Nucleic Acids Res 35, 7188–7196. [View Article] [PubMed]
    [Google Scholar]
14. Rantsiou K., Cocolin L. ( 2008 ). Fermented meat products. . In Molecular Techniques in the Microbial Ecology of Fermented Foods, pp. 91–118. Edited by Cocolin L., Ercolini D. . New York:: Springer;. [View Article]
    [Google Scholar]
15. Schumann P. ( 2011 ). Peptidoglycan structure. . In Methods in Microbiology Taxonomy of Prokaryotes, vol. 38, pp. 101–129. Edited by Rainey F., Oren A. . London:: Academic Press;. [View Article]
    [Google Scholar]
16. Švec P., Vancanneyt M., Seman M., Snauwaert C., Lefebvre K., Sedlácek I., Swings J. ( 2005a ). Evaluation of (GTG)₅-PCR for identification of Enterococcus spp. . FEMS Microbiol Lett 247, 59–63. [View Article] [PubMed]
    [Google Scholar]
17. Švec P., Vancanneyt M., Devriese L. A., Naser S. M., Snauwaert C., Lefebvre K., Hoste B., Swings J. ( 2005b ). Enterococcus aquimarinus sp. nov., isolated from sea water. . Int J Syst Evol Microbiol 55, 2183–2187. [View Article] [PubMed]
    [Google Scholar]
18. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 2731–2739. [View Article] [PubMed]
    [Google Scholar]
19. Tanasupawat S., Pakdeeto A., Thawai C., Yukphan P., Okada S. ( 2007 ). Identification of lactic acid bacteria from fermented tea leaves (miang) in Thailand and proposals of Lactobacillus thailandensis sp. nov., Lactobacillus camelliae sp. nov., and Pediococcus siamensis sp. nov.. J Gen Appl Microbiol 53, 7–15. [View Article] [PubMed]
    [Google Scholar]
20. Vancanneyt M., Naser S. M., Engelbeen K., De Wachter M., Van der Meulen R., Cleenwerck I., Hoste B., De Vuyst L., Swings J. ( 2006 ). Reclassification of Lactobacillus brevis strains LMG 11494 and LMG 11984 as Lactobacillus parabrevis sp. nov.. Int J Syst Evol Microbiol 56, 1553–1557. [View Article] [PubMed]
    [Google Scholar]
21. Versalovic J., Schneider M., de Bruijn F. J., Lupski J. R. ( 1994 ). Genomic fingerprinting of bacteria using repetitive sequence based PCR (rep-PCR). . Methods Mol Cell Biol 5, 25–40.
    [Google Scholar]