1887

Abstract

A Gram-staining-positive, aerobic, non-motile bacterium, designated strain SJ5-8, was isolated from (shrimp jeotgal), a traditional fermented seafood in South Korea. Cells were non-spore-forming rods showing catalase- and oxidase-positive reactions. Growth of strain SJ5-8 was observed at 10–37 °C (optimum, 30 °C), at pH 6.0–9.0 (optimum, pH 7.5–8.5) and in the presence of 0–14 % (w/v) NaCl (optimum, 5 %). Phylogenetic inference based on 16S rRNA gene sequences showed that the strain formed a tight phyletic lineage with members of the genus Strain SJ5-8 was most closely related to MN-6-a, 2C6-41 and TRM 415 with similarities of 98.9, 97.5 and 97.4 %, respectively. The DNA–DNA relatedness values between strain SJ5-8 and the type strains of , and were 51.7±1.9 %, 22.2±4.0 % and 52.4±3.8 %, respectively. Chemotaxonomic data (major sole isoprenoid quinone, MK-8(H); major diagnostic diamino acid, -diaminopimelic acid; major polyamines, putrescine and cadaverine; major cellular fatty acids, anteiso-C, iso-C and anteiso-C; major polar lipids, phosphatidylglycerol and diphosphatidylglycerol; DNA G+C content, 69.3 mol%) also supported the affiliation of strain SJ5-8 to the genus . Therefore, strain SJ5-8 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is SJ5-8 ( = KACC 16911 = JCM 18571).

Funding
This study was supported by the:
  • Ministry for Agriculture
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2013-09-01
2024-04-25
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References

  1. Altenburger P., Kämpfer P., Akimov V. N., Lubitz W., Busse H.-J. ( 1997 ). Polyamine distribution in actinomycetes with group B peptidoglycan and species of the genera Brevibacterium, Corynebacterium and Tsukamurella . . Int J Syst Bacteriol 47, 270277. [View Article]
    [Google Scholar]
  2. Breed R. S. ( 1953 ). The Brevibacteriaceae fam. nov. of order Eubacterials . . In Riassunti delle Communicazione Vl, Congresso Internazionale Microbiologia, Roma, vol. 1, pp. 1314.
    [Google Scholar]
  3. Collins M. D., Jones D., Keddie R. M., Sneath P. H. A. ( 1980 ). Reclassification of Chromobacterium iodinum (Davis) in a redefined genus Brevibacterium (Breed) as Brevibacterium iodinum nom. rev.; comb. nov.. J Gen Microbiol 120, 110.
    [Google Scholar]
  4. Cui Y., Kang M. S., Woo S. G., Jin L., Kim K. K., Park J., Lee M., Lee S. T. ( 2013 ). Brevibacterium daeguense sp. nov., a nitrate-reducing bacterium isolated from a 4-chlorophenol enrichment culture. . Int J Syst Evol Microbiol 63, 152157. [View Article] [PubMed]
    [Google Scholar]
  5. DeSantis T. Z. Jr, Hugenholtz P., Keller K., Brodie E. L., Larsen N., Piceno Y. M., Phan R., Andersen G. L. ( 2006 ). nast: a multiple sequence alignment server for comparative analysis of 16S rRNA genes. . Nucleic Acids Res 34 (Web Server issue), W394W399. [View Article] [PubMed]
    [Google Scholar]
  6. Eschbach M., Möbitz H., Rompf A., Jahn D. ( 2003 ). Members of the genus Arthrobacter grow anaerobically using nitrate ammonification and fermentative processes: anaerobic adaptation of aerobic bacteria abundant in soil. . FEMS Microbiol Lett 223, 227230. [View Article] [PubMed]
    [Google Scholar]
  7. Euzéby J. P. ( 1997 ). List of bacterial names with standing in nomenclature: a folder available on the internet. . Int J Syst Bacteriol 47, 590592. [View Article] [PubMed]
    [Google Scholar]
  8. Felsenstein J. ( 2002 ). phylip (phylogeny inference package), version 3.6a Distributed by the author. . Department of Genome Sciences, University of Washington;, Seattle, USA:.
    [Google Scholar]
  9. Gomori G. ( 1955 ). Preparation of buffers for use in enzyme studies. . In Methods in Enzymology, vol. 1, pp. 138146. Edited by Colowick S. P., Kaplan N. O. . New York:: Academic Press;. [View Article]
    [Google Scholar]
  10. Gonzalez J. M., Saiz-Jimenez C. ( 2002 ). A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature. . Environ Microbiol 4, 770773. [View Article] [PubMed]
    [Google Scholar]
  11. Guan T. W., Zhao K., Xiao J., Liu Y., Xia Z. F., Zhang X. P., Zhang L. L. ( 2010 ). Brevibacterium salitolerans sp. nov., an actinobacterium isolated from salt-lake sediment. . Int J Syst Evol Microbiol 60, 29912995. [View Article] [PubMed]
    [Google Scholar]
  12. Heyrman J., Verbeeren J., Schumann P., Devos J., Swings J., De Vos P. ( 2004 ). Brevibacterium picturae sp. nov., isolated from a damaged mural painting at the Saint-Catherine chapel (Castle Herberstein, Austria). . Int J Syst Evol Microbiol 54, 15371541. [View Article] [PubMed]
    [Google Scholar]
  13. Isnansetyo A., Kamei Y. ( 2003 ). Pseudoalteromonas phenolica sp. nov., a novel marine bacterium that produces phenolic anti-methicillin-resistant Staphylococcus aureus substances. . Int J Syst Evol Microbiol 53, 583588. [View Article] [PubMed]
    [Google Scholar]
  14. Jeon C. O., Park W., Ghiorse W. C., Madsen E. L. ( 2004 ). Polaromonas naphthalenivorans sp. nov., a naphthalene-degrading bacterium from naphthalene-contaminated sediment. . Int J Syst Evol Microbiol 54, 9397. [View Article] [PubMed]
    [Google Scholar]
  15. Jeong S. H., Lee J. H., Jung J. Y., Lee S. H., Park M. S., Jeon C. O. ( 2013 ). Halomonas cibimaris sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. . Antonie van Leeuwenhoek 103, 503512. [View Article] [PubMed]
    [Google Scholar]
  16. Jin H. M., Lee H. J., Kim J. M., Park M. S., Lee K., Jeon C. O. ( 2011 ). Litorimicrobium taeanense gen. nov., sp. nov., isolated from a sandy beach. . Int J Syst Evol Microbiol 61, 13921396. [View Article] [PubMed]
    [Google Scholar]
  17. Jung J. Y., Lee S. H., Lee H. J., Jeon C. O. ( 2013 ). Microbial succession and metabolite changes during fermentation of saeu-jeot: traditional Korean salted seafood. . Food Microbiol 34, 360368. [View Article] [PubMed]
    [Google Scholar]
  18. Kämpfer P., Schäfer J., Lodders N., Busse H.-J. ( 2010 ). Brevibacterium sandarakinum sp. nov., isolated from a wall of an indoor environment. . Int J Syst Evol Microbiol 60, 909913. [View Article] [PubMed]
    [Google Scholar]
  19. Katı H., İnce İ. A., Demir İ., Demirbağ Z. ( 2010 ). Brevibacterium pityocampae sp. nov., isolated from caterpillars of Thaumetopoea pityocampa (Lepidoptera, Thaumetopoeidae). . Int J Syst Evol Microbiol 60, 312316. [View Article] [PubMed]
    [Google Scholar]
  20. Kim J. M., Lee H. J., Kim S. Y., Song J. J., Park W., Jeon C. O. ( 2010 ). Analysis of fine-scale population structure of "Candidatus Accumulibacter phosphatis” in enhanced biological phosphorus removal sludge, using fluorescence in situ hybridization and flow cytometric sorting. . Appl Environ Microbiol 76, 38253835. [View Article] [PubMed]
    [Google Scholar]
  21. Kim O. S., Cho Y. J., Lee K., Yoon S. H., Kim M., Na H., Park S. C., Jeon Y. S., Lee J. H. & other authors ( 2012 ). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716721. [View Article] [PubMed]
    [Google Scholar]
  22. Kim J., Srinivasan S., You T., Bang J. J., Park S., Lee S. S. ( 2013 ). Brevibacterium ammoniilyticum sp. nov., an ammonia-degrading bacterium isolated from sludge of a wastewater treatment plant. . Int J Syst Evol Microbiol 63, 11111118. [View Article] [PubMed]
    [Google Scholar]
  23. Komagata K., Suzuki K. ( 1988 ). Lipid and cell-wall analysis in bacterial systematics. . Methods Microbiol 19, 161207. [View Article]
    [Google Scholar]
  24. Kumar A., İnce İ. A., Katı A., Chakraborty R. ( 2013 ). Brevibacterium siliguriense sp. nov., a facultatively oligotrophic bacterium isolated from river water. . Int J Syst Evol Microbiol 63, 511515. [View Article] [PubMed]
    [Google Scholar]
  25. Lányí B. ( 1988 ). Classical and rapid identification methods for medically important bacteria. . Methods Microbiol 19, 167. [View Article]
    [Google Scholar]
  26. Lee S. H., Shim J. K., Kim J. M., Choi H.-K., Jeon C. O. ( 2011 ). Henriciella litoralis sp. nov., isolated from a tidal flat, transfer of Maribaculum marinum Lai et al. 2009 to the genus Henriciella as Henriciella aquimarina nom. nov. and emended description of the genus Henriciella . . Int J Syst Evol Microbiol 61, 722727. [View Article] [PubMed]
    [Google Scholar]
  27. Minnikin D. E., Patel P. V., Alshamaony L., Goodfellow M. ( 1977 ). Polar lipid composition in the classification of Nocardia and related bacteria. . Int J Syst Bacteriol 27, 104117. [View Article]
    [Google Scholar]
  28. Rosselló-Mora R., Amann R. ( 2001 ). The species concept for prokaryotes. . FEMS Microbiol Rev 25, 3967. [View Article] [PubMed]
    [Google Scholar]
  29. Roux V., Raoult D. ( 2009 ). Brevibacterium massiliense sp. nov., isolated from a human ankle discharge. . Int J Syst Evol Microbiol 59, 19601964. [View Article] [PubMed]
    [Google Scholar]
  30. Sasser M. ( 1990 ). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. . Newark, DE:: MIDI Inc.;
    [Google Scholar]
  31. Smibert R. M., Krieg N. R. ( 1994 ). Phenotypic characterization. . In Methods for General and Molecular Bacteriology, pp. 607654. Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. . Washington, DC:: American Society for Microbiology;.
    [Google Scholar]
  32. Stamatakis A., Ott M., Ludwig T. ( 2005 ). RAxML-OMP: an efficient program for phylogenetic inference on SMPs. . In Proceedings of 8th International Conference on Parallel Computing Technologies (PaCT2005), Lecture Notes in Computer Science 3606, pp. 288302. Berlin:: Springer;.
    [Google Scholar]
  33. Tang S. K., Wang Y., Schumann P., Stackebrandt E., Lou K., Jiang C. L., Xu L. H., Li W. J. ( 2008 ). Brevibacterium album sp. nov., a novel actinobacterium isolated from a saline soil in China. . Int J Syst Evol Microbiol 58, 574577. [View Article] [PubMed]
    [Google Scholar]
  34. Tonouchi A., Kitamura K., Fujita T. ( 2013 ). Brevibacterium yomogidense sp. nov., isolated from a soil conditioner made from poultry manure. . Int J Syst Evol Microbiol 63, 516520. [View Article] [PubMed]
    [Google Scholar]
  35. Verma P., Pandey P. K., Gupta A. K., Kim H. J., Baik K. S., Seong C. N., Patole M. S., Shouche Y. S. ( 2011 ). Shewanella indica sp. nov., isolated from sediment of the Arabian Sea. . Int J Syst Evol Microbiol 61, 20582064. [View Article] [PubMed]
    [Google Scholar]
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