Nibrella saemangeumensis gen. nov., sp. nov. and Nibrella viscosa sp. nov., novel members of the family Cytophagaceae, isolated from seawater

References

1. Anandham R., Kwon S. W., Weon H. Y., Kim S. J., Kim Y. S., Gandhi P. I., Kim Y. K., Jee H. J. ( 2011 ). Larkinella bovis sp. nov., isolated from fermented bovine products, and emended descriptions of the genus Larkinella and of Larkinella insperata Vancanneyt et al. 2006. . Int J Syst Evol Microbiol 61, 30–34. [View Article] [PubMed]
   [Google Scholar]
2. Bowman J. P. ( 2000 ). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov.. Int J Syst Evol Microbiol 50, 1861–1868.[PubMed]
   [Google Scholar]
3. Collins M. ( 1985 ). Isoprenoid quinone analysis in classification and identification. . In Chemical Methods in Bacterial Systematics, pp. 267–287. Edited by Goodfellow M., Minnikin D. E. . London:: Academic Press;.[PubMed]
   [Google Scholar]
4. Felsenstein J. ( 1981 ). Evolutionary trees from DNA sequences: a maximum likelihood approach. . J Mol Evol 17, 368–376. [View Article] [PubMed]
   [Google Scholar]
5. Felsenstein J. ( 1985 ). Confidence limits on phylogenies: an approach using the bootstrap. . Evolution 39, 783–791. [View Article]
   [Google Scholar]
6. Filippini M., Svercel M., Laczko E., Kaech A., Ziegler U., Bagheri H. C. ( 2011 ). Fibrella aestuarina gen. nov., sp. nov., a filamentous bacterium of the family Cytophagaceae isolated from a tidal flat, and emended description of the genus Rudanella Weon et al. 2008. . Int J Syst Evol Microbiol 61, 184–189. [View Article] [PubMed]
   [Google Scholar]
7. Finster K. W., Herbert R. A., Lomstein B. A. ( 2009 ). Spirosoma spitsbergense sp. nov. and Spirosoma luteum sp. nov., isolated from a high Arctic permafrost soil, and emended description of the genus Spirosoma . . Int J Syst Evol Microbiol 59, 839–844. [View Article] [PubMed]
   [Google Scholar]
8. Fitch W. M. ( 1971 ). Toward defining the course of evolution: minimum change for a specific tree topology. . Syst Zool 20, 406–416. [View Article]
   [Google Scholar]
9. Kim O. S., Cho Y. J., Lee K., Yoon S. H., Kim M., Na H., Park S. C., Jeon Y. S., Lee J. H. & other authors ( 2012 ). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716–721. [View Article] [PubMed]
   [Google Scholar]
10. Kimura M. ( 1980 ). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. . J Mol Evol 16, 111–120. [View Article] [PubMed]
    [Google Scholar]
11. Kulichevskaya I., Zaichikova M., Detkova E., Dedysh S., Zavarzin G. ( 2009 ). Larkinella arboricola sp. nov., a new spiral-shaped bacterium of the phylum Bacteroidetes isolated from the microbial community of decomposing wood. . Microbiology (English translation of Mikrobiologiya) 78, 741–746. [View Article]
    [Google Scholar]
12. Marchesi J. R., Sato T., Weightman A. J., Martin T. A., Fry J. C., Hiom S. J., Dymock D., Wade W. G. ( 1998 ). Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA. . Appl Environ Microbiol 64, 795–799.[PubMed]
    [Google Scholar]
13. Minnikin D., O'donnell A., Goodfellow M., Alderson G., Athalye M., Schaal A., Parlett J. ( 1984 ). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. . J Microbiol Methods 2, 233–241. [View Article]
    [Google Scholar]
14. Nakagawa Y. ( 2011 ). Family I. Cytophagaceae Stanier 1940, 630AL. . Bergey’s Manual of Systematic Bacteriology, , 2nd edn., vol. 4, pp. 371–423. Edited by Krieg N. R., Staley J. T., Brown D. R., Hedlund B. P., Paster B. J., Ward N. L, Ludwig W., Whitman W. B. . New York:: Springer;.[PubMed]
    [Google Scholar]
15. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406–425.[PubMed]
    [Google Scholar]
16. Scherer P., Kneifel H. ( 1983 ). Distribution of polyamines in methanogenic bacteria. . J Bacteriol 154, 1315–1322.[PubMed]
    [Google Scholar]
17. Stackebrandt E., Goebel B. ( 1994 ). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. . Int J Syst Bacteriol 44, 846–849. [View Article]
    [Google Scholar]
18. Tamaoka J., Katayama-Fujimura Y., Kuraishi H. ( 1983 ). Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. . J Appl Microbiol 54, 31–36. [View Article]
    [Google Scholar]
19. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 2731–2739. [View Article] [PubMed]
    [Google Scholar]
20. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. ( 1997 ). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. . Nucleic Acids Res 25, 4876–4882. [View Article] [PubMed]
    [Google Scholar]
21. Tittsler R. P., Sandholzer L. A. ( 1936 ). The use of semi-solid agar for the detection of bacterial motility. . J Bacteriol 31, 575–580.[PubMed]
    [Google Scholar]
22. Weon H. Y., Noh H. J., Son J. A., Jang H. B., Kim B. Y., Kwon S. W., Stackebrandt E. ( 2008 ). Rudanella lutea gen. nov., sp. nov., isolated from an air sample in Korea. . Int J Syst Evol Microbiol 58, 474–478. [View Article] [PubMed]
    [Google Scholar]
23. Yang P., De Vos P., Kersters K., Swings J. ( 1993 ). Polyamine patterns as chemotaxonomic markers for the genus Xanthomonas . . Int J Syst Bacteriol 43, 709–714. [View Article]
    [Google Scholar]