1887

Abstract

A Gram-stain-negative, non-spore-forming, facultatively anaerobic bacterium, designated strain SC18, was isolated from a tidal flat of Suncheon bay in South Korea. Cells were rod-shaped and motile by means of a polar flagellum. Cells were catalase-, oxidase- and β-haemolysis-positive. Growth was observed at 4–37 °C (optimum, 25–30 °C), at pH 5.0–9.0 (optimum, pH 7.0) and in the presence of 0–5.0 % (w/v) NaCl (optimum, 0–2 %). The major cellular fatty acids were summed feature 3 (comprising Cω7 and/or Cω6), iso-C and C. The polar lipid pattern indicated the presence of phosphatidylethanolamine, phosphatidylglycerol, phosphatidylmethylethanolamine, an unidentified aminolipid and three unidentified lipids. Strain SC18 contained Q-7, Q-8, MK-7 and MMK-7 as the dominant respiratory quinones and the G+C content of the genomic DNA was 41.3 mol%. Phylogenetic analysis based on 16S rRNA and gyrase B () gene sequences showed that strain SC18 formed a tight phyletic lineage with members of the genus . Strain SC18 was related most closely to OS217 (97.3 % 16S rRNA gene sequence similarity) and TF-27 (97.1 %), but the DNA–DNA relatedness levels between strain SC18 and the type strains of and were 18.3±2.8 and 22.5±1.6 % (mean±), respectively. On the basis of phenotypic, chemotaxonomic and molecular features, strain SC18 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is SC18 ( = KACC 16187 = JCM 17801).

Funding
This study was supported by the:
  • National Research Foundation of Korea (Award 2012R1A1B)
  • National Institute of Biological Resources (Award 2013-02-001)
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2013-12-01
2024-04-18
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References

  1. Anzai Y., Kim H., Park J. Y., Wakabayashi H., Oyaizu H. ( 2000 ). Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence. . Int J Syst Evol Microbiol 50, 15631589. [View Article] [PubMed]
    [Google Scholar]
  2. Bowman J. P. ( 2005 ). Genus XIII. Shewanella MacDonell and Colwell 1986, 355VP (Effective publication: MacDonell and Colwell 1985, 180). . In Bergey’s Manual of Systematic Bacteriology, , 2nd edn., vol. 2B, pp. 480491. Edited by Brenner D. J., Krieg N. R., Staley J. T., Garrity G. M. . New York:: Springer;.
    [Google Scholar]
  3. Bozal N., Montes M. J., Tudela E., Jiménez F., Guinea J. ( 2002 ). Shewanella frigidimarina and Shewanella livingstonensis sp. nov. isolated from Antarctic coastal areas. . Int J Syst Evol Microbiol 52, 195205.[PubMed]
    [Google Scholar]
  4. Brettar I., Christen R., Höfle M. G. ( 2002 ). Shewanella denitrificans sp. nov., a vigorously denitrifying bacterium isolated from the oxic–anoxic interface of the Gotland Deep in the central Baltic Sea. . Int J Syst Evol Microbiol 52, 22112217. [View Article] [PubMed]
    [Google Scholar]
  5. Bruns A., Rohde M., Berthe-Corti L. ( 2001 ). Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment. . Int J Syst Evol Microbiol 51, 19972006. [View Article] [PubMed]
    [Google Scholar]
  6. Cowan S. T., Steel K. J. ( 1965 ). Manual for the Identification of Medical Bacteria. London:: Cambridge University Press;.
    [Google Scholar]
  7. Euzéby J. P. ( 2013 ). List of bacterial names with standing in nomenclature: a folder available on the Internet. . [Last full update 9 June 2013]. http://www.bacterio.cict.fr/.
  8. Felsenstein J. ( 2002 ). phylip (phylogeny inference package), version 3.6a. . Distributed by the author. Department of Genome Sciences, University of Washington;, Seattle, USA:.
    [Google Scholar]
  9. Gomori G. ( 1955 ). Preparation of buffers for use in enzyme studies. . In Methods in Enzymology, vol. 1, pp. 138146. Edited by Colowick S. P., Kaplan N. O. . New York:: Academic Press;. [View Article]
    [Google Scholar]
  10. Gonzalez J. M., Saiz-Jimenez C. ( 2002 ). A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature. . Environ Microbiol 4, 770773. [View Article] [PubMed]
    [Google Scholar]
  11. Jeong S. H., Park M. S., Jin H. M., Lee K., Park W., Jeon C. O. ( 2013a ). Aestuariibaculum suncheonense gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from a tidal flat and emended descriptions of the genera Gaetbulibacter and Tamlana . . Int J Syst Evol Microbiol 63, 332338. [View Article] [PubMed]
    [Google Scholar]
  12. Jeong S. H., Jin H. M., Lee H. J., Jeon C. O. ( 2013b ). Altererythrobacter gangjinensis sp. nov., a marine bacterium isolated from a tidal flat. . Int J Syst Evol Microbiol 63, 971976. [View Article] [PubMed]
    [Google Scholar]
  13. Jin H. M., Lee H. J., Kim J. M., Park M. S., Lee K., Jeon C. O. ( 2011 ). Litorimicrobium taeanense gen. nov., sp. nov., isolated from a sandy beach. . Int J Syst Evol Microbiol 61, 13921396. [View Article] [PubMed]
    [Google Scholar]
  14. Jin H. M., Kim J. M., Lee H. J., Madsen E. L., Jeon C. O. ( 2012 ). Alteromonas as a key agent of polycyclic aromatic hydrocarbon biodegradation in crude oil-contaminated coastal sediment. . Environ Sci Technol 46, 77317740. [View Article] [PubMed]
    [Google Scholar]
  15. Kim J. M., Jung J. Y., Chae H. B., Park W., Jeon C. O. ( 2010 ). Hwanghaeicola aestuarii gen. nov., sp. nov., a moderately halophilic bacterium isolated from a tidal flat of the Yellow Sea. . Int J Syst Evol Microbiol 60, 28772881. [View Article] [PubMed]
    [Google Scholar]
  16. Kim O. S., Cho Y. J., Lee K., Yoon S. H., Kim M., Na H., Park S. C., Jeon Y. S., Lee J. H. & other authors ( 2012a ). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716721. [View Article] [PubMed]
    [Google Scholar]
  17. Kim S. J., Park S. J., Oh Y. S., Lee S. A., Shin K. S., Roh D. H., Rhee S. K. ( 2012b ). Shewanella arctica sp. nov., an iron-reducing bacterium isolated from Arctic marine sediment. . Int J Syst Evol Microbiol 62, 11281133. [View Article] [PubMed]
    [Google Scholar]
  18. Komagata K., Suzuki K. ( 1987 ). Lipid and cell-wall analysis in bacterial systematics. . Methods Microbiol 19, 161208. [View Article]
    [Google Scholar]
  19. Lanyi B. ( 1987 ). Classical and rapid identification methods for medically important bacteria. . Methods Microbiol 19, 167. [View Article]
    [Google Scholar]
  20. Lee S. H., Shim J. K., Kim J. M., Choi H. K., Jeon C. O. ( 2011 ). Henriciella litoralis sp. nov., isolated from a tidal flat, transfer of Maribaculum marinum Lai et al. 2009 to the genus Henriciella as Henriciella aquimarina nom. nov. and emended description of the genus Henriciella . . Int J Syst Evol Microbiol 61, 722727. [View Article] [PubMed]
    [Google Scholar]
  21. Leifson E. ( 1963 ). Determination of carbohydrate metabolism of marine bacteria. . J Bacteriol 85, 11831184.[PubMed]
    [Google Scholar]
  22. Lu S., Park M., Ro H.-S., Lee D. S., Park W., Jeon C. O. ( 2006 ). Analysis of microbial communities using culture-dependent and culture-independent approaches in an anaerobic/aerobic SBR reactor. . J Microbiol 44, 155161.[PubMed]
    [Google Scholar]
  23. MacDonell M. T., Colwell R. R. ( 1985 ). Phylogeny of the Vibrionaceae, and recommendation for two new genera, Listonella and Shewanella . . Syst Appl Microbiol 6, 171182. [View Article]
    [Google Scholar]
  24. Math R. K., Jin H. M., Kim J. M., Hahn Y., Park W., Madsen E. L., Jeon C. O. ( 2012 ). Comparative genomics reveals adaptation by Alteromonas sp. SN2 to marine tidal-flat conditions: cold tolerance and aromatic hydrocarbon metabolism. . PLoS ONE 7, e35784. [View Article] [PubMed]
    [Google Scholar]
  25. Minnikin D. E., Patel P. V., Alshamaony L., Goodfellow M. ( 1977 ). Polar lipid composition in the classification of Nocardia and related bacteria. . Int J Syst Bacteriol 27, 104117. [View Article]
    [Google Scholar]
  26. Park S. C., Baik K. S., Kim M. S., Kim D., Seong C. N. ( 2009 ). Shewanella marina sp. nov., isolated from seawater. . Int J Syst Evol Microbiol 59, 18881894. [View Article] [PubMed]
    [Google Scholar]
  27. Rosselló-Mora R., Amann R. ( 2001 ). The species concept for prokaryotes. . FEMS Microbiol Rev 25, 3967. [View Article] [PubMed]
    [Google Scholar]
  28. Sasser M. ( 1990 ). Identification of bacteria by gas chromatography of cellular fatty acids. . USFCC Newsl 20, 16.
    [Google Scholar]
  29. Satomi M., Vogel B. F., Venkateswaran K., Gram L. ( 2007 ). Description of Shewanella glacialipiscicola sp. nov. and Shewanella algidipiscicola sp. nov., isolated from marine fish of the Danish Baltic Sea, and proposal that Shewanella affinis is a later heterotypic synonym of Shewanella colwelliana . . Int J Syst Evol Microbiol 57, 347352. [View Article] [PubMed]
    [Google Scholar]
  30. Smibert R. M., Krieg N. R. ( 1994 ). Phenotypic characterization. . In Methods for General and Molecular Bacteriology, pp. 607654. Edited by Gerhardt P. . Washington, DC:: American Society for Microbiology;.
    [Google Scholar]
  31. Sravan Kumar R., Sasi Jyothsna T. S., Sasikala Ch., Seong C. N., Lim C. H., Park S. C., Ramana ChV. ( 2010 ). Shewanella fodinae sp. nov., isolated from a coal mine and from a marine lagoon. . Int J Syst Evol Microbiol 60, 16491654. [View Article] [PubMed]
    [Google Scholar]
  32. Stamatakis A., Ott M., Ludwig T. ( 2005 ). RAxML-OMP: an efficient program for phylogenetic inference on SMPs. . In Proceedings of 8th International Conference on Parallel Computing Technologies (PaCT2005), Lecture Notes in Computer Science, 3506, 288302. New York:: Springer;.
    [Google Scholar]
  33. Sung H. R., Yoon J. H., Ghim S. Y. ( 2012 ). Shewanella dokdonensis sp. nov., isolated from seawater. . Int J Syst Evol Microbiol 62, 16361643. [View Article] [PubMed]
    [Google Scholar]
  34. Venkateswaran K., Moser D. P., Dollhopf M. E., Lies D. P., Saffarini D. A., MacGregor B. J., Ringelberg D. B., White D. C., Nishijima M. & other authors ( 1999 ). Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov.. Int J Syst Bacteriol 49, 705724. [View Article] [PubMed]
    [Google Scholar]
  35. Verma P., Pandey P. K., Gupta A. K., Kim H. J., Baik K. S., Seong C. N., Patole M. S., Shouche Y. S. ( 2011 ). Shewanella indica sp. nov., isolated from sediment of the Arabian Sea. . Int J Syst Evol Microbiol 61, 20582064. [View Article] [PubMed]
    [Google Scholar]
  36. Wang Q., Garrity G. M., Tiedje J. M., Cole J. R. ( 2007 ). Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. . Appl Environ Microbiol 73, 52615267. [View Article] [PubMed]
    [Google Scholar]
  37. Winberg P. C., Lynch T. P., Murray A., Jones A. R., Davis A. R. ( 2007 ). The importance of spatial scale for the conservation of tidal flat macrobenthos: an example from New South Wales, Australia. . Biol Conserv 134, 310320. [View Article]
    [Google Scholar]
  38. Yamamoto S., Harayama S. ( 1995 ). PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains. . Appl Environ Microbiol 61, 11041109.[PubMed]
    [Google Scholar]
  39. Yoon J. H., Kang K. H., Oh T. K., Park Y. H. ( 2004 ). Shewanella gaetbuli sp. nov., a slight halophile isolated from a tidal flat in Korea. . Int J Syst Evol Microbiol 54, 487491. [View Article] [PubMed]
    [Google Scholar]
  40. Yurkov V., Stackebrandt E., Holmes A., Fuerst J. A., Hugenholtz P., Golecki J., Gad’on N., Gorlenko V. M., Kompantseva E. I., Drews G. ( 1994 ). Phylogenetic positions of novel aerobic, bacteriochlorophyll a-containing bacteria and description of Roseococcus thiosulfatophilus gen. nov., sp. nov., Erythromicrobium ramosum gen. nov., sp. nov., and Erythrobacter litoralis sp. nov.. Int J Syst Bacteriol 44, 427434. [View Article] [PubMed]
    [Google Scholar]
  41. Zhao J. S., Manno D., Thiboutot S., Ampleman G., Hawari J. ( 2007 ). Shewanella canadensis sp. nov. and Shewanella atlantica sp. nov., manganese dioxide- and hexahydro-1,3,5-trinitro-1,3,5-triazine-reducing, psychrophilic marine bacteria. . Int J Syst Evol Microbiol 57, 21552162. [View Article] [PubMed]
    [Google Scholar]
  42. Ziemke F., Höfle M. G., Lalucat J., Rosselló-Mora R. ( 1998 ). Reclassification of Shewanella putrefaciens Owen’s genomic group II as Shewanella baltica sp. nov.. Int J Syst Bacteriol 48, 179186. [View Article] [PubMed]
    [Google Scholar]
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