Mobilitalea sibirica gen. nov., sp. nov., a halotolerant polysaccharide-degrading bacterium

References

1. Bonch-Osmolovskaya E. A., Sokolova T. G., Kostrikina N. A., Zavarzin G. A. ( 1990 ). Desulfurella acetivorans gen. nov. and sp. nov. – a new thermophilic sulfur-reducing eubacterium. . Arch Microbiol 153, 151–155. [View Article]
   [Google Scholar]
2. Collins M. D., Lawson P. A., Willems A., Cordoba J. J., Fernandez-Garayzabal J., Garcia P., Cai J., Hippe H., Farrow J. A. E. ( 1994 ). The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations. . Int J Syst Bacteriol 44, 812–826. [View Article] [PubMed]
   [Google Scholar]
3. Felsenstein J. ( 1985 ). Confidence limits on phylogenies: an approach using the bootstrap. . Evolution 39, 783–791. [View Article]
   [Google Scholar]
4. Hardman J. K., Stadtman T. C. ( 1960 ). Metabolism of ω-acids. II. Fermentation of Δ-aminovaleric acid by Clostridium aminovalericum n. sp.. J Bacteriol 79, 549–552.[PubMed]
   [Google Scholar]
5. Jeong H., Yi H., Sekiguchi Y., Muramatsu M., Kamagata Y., Chun J. ( 2004 ). Clostridium jejuense sp. nov., isolated from soil. . Int J Syst Evol Microbiol 54, 1465–1468. [View Article] [PubMed]
   [Google Scholar]
6. Kim O. S., Cho Y. J., Lee K., Yoon S. H., Kim M., Na H., Park S. C., Jeon Y. S., Lee J. H. & other authors ( 2012 ). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716–721. [View Article] [PubMed]
   [Google Scholar]
7. Larsen H. ( 1986 ). Halophilic and halotolerant microorganisms-an overview and historical perspective. . FEMS Microbiol Rev 39, 3–7. [View Article]
   [Google Scholar]
8. Lovley D. R., Phillips E. J. P. ( 1988 ). Novel mode of microbial energy metabolism: organic carbon oxidation coupled to dissimilatory reduction of iron or manganese. . Appl Environ Microbiol 54, 1472–1480.[PubMed]
   [Google Scholar]
9. Marmur J., Doty P. ( 1962 ). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. . J Mol Biol 5, 109–118. [View Article] [PubMed]
   [Google Scholar]
10. Mechichi T., Labat M., Garcia J. L., Thomas P., Patel B. K. C. ( 1999 ). Characterization of a new xylanolytic bacterium, Clostridium xylanovorans sp. nov.. Syst Appl Microbiol 22, 366–371. [View Article] [PubMed]
    [Google Scholar]
11. Miroshnichenko M. L., Kublanov I. V., Kostrikina N. A., Tourova T. P., Kolganova T. V., Birkeland N. K., Bonch-Osmolovskaya E. A. ( 2008 ). Caldicellulosiruptor kronotskyensis sp. nov. and Caldicellulosiruptor hydrothermalis sp. nov., two extremely thermophilic, cellulolytic, anaerobic bacteria from Kamchatka thermal springs. . Int J Syst Evol Microbiol 58, 1492–1496. [View Article] [PubMed]
    [Google Scholar]
12. Park D. ( 2007 ). Genomic DNA isolation from different biological materials. . In Methods in Molecular Biology, ver. 353: Protocols for Nucleic Acid Analysis by Nonradioactive Probes, , 2nd edn., pp. 3–13. Edited by Hilario E., Mackay J. . Totowa, NJ:: Humana Press Inc;. [View Article]
    [Google Scholar]
13. Perevalova A. A., Kublanov I. V., Baslerov R. V., Zhang G., Bonch-Osmolovskaya E. A. ( 2013 ). Brockia lithotrophica gen. nov., sp. nov., an anaerobic thermophilic bacterium from a terrestrial hot spring. . Int J Syst Evol Microbiol 63, 479–483. [View Article] [PubMed]
    [Google Scholar]
14. Podosokorskaya O. A., Merkel A. Yu., Kolganova T. V., Chernyh N. A., Miroshnichenko M. L., Bonch-Osmolovskaya E. A., Kublanov I. V. ( 2011 ). Fervidobacterium riparium sp. nov., a thermophilic anaerobic cellulolytic bacterium isolated from a hot spring. . Int J Syst Evol Microbiol 61, 2697–2701. [View Article] [PubMed]
    [Google Scholar]
15. Podosokorskaya O. A., Bonch-Osmolovskaya E. A., Novikov A. A., Kolganova T. V., Kublanov I. V. ( 2013a ). Ornatilinea apprima gen. nov., sp. nov., a cellulolytic representative of the class Anaerolineae . . Int J Syst Evol Microbiol 63, 86–92. [View Article] [PubMed]
    [Google Scholar]
16. Podosokorskaya O. A., Kadnikov V. V., Gavrilov S. N., Mardanov A. V., Merkel A. Y., Karnachuk O. V., Ravin N. V., Bonch-Osmolovskaya E. A., Kublanov I. V. ( 2013b ). Characterization of Melioribacter roseus gen. nov. sp. nov., a novel facultatively anaerobic thermophilic cellulolytic bacterium from the class Ignavibacteria, and a proposal of a novel bacterial phylum Ignavibacteriae . . Environ Microbiol 15, 1759–1771. [View Article] [PubMed]
    [Google Scholar]
17. Rainey F. A. ( 2009a ). Order I. Clostridiales Prévot 1953. . In Bergey’s Manual of Systematic Bacteriology , , 2nd edn., vol. 3 (The Firmicutes), p. 736. Edited by De Vos P., Garrity G. M., Jones D., Krieg N. R., Ludwig W., Rainey F. A., Schleifer K. H., Whitman W. B. . New York:: Springer;.
    [Google Scholar]
18. Rainey F. A. ( 2009b ). Family V. Lachnospiraceae fam. nov. . In Bergey’s Manual of Systematic Bacteriology, , 2nd edn., vol. 3 (The Firmicutes), p. 921. Edited by De Vos P., Garrity G. M., Jones D., Krieg N. R., Ludwig W., Rainey F. A., Schleifer K. H., Whitman W. B. . New York:: Springer;.
    [Google Scholar]
19. Rainey F. A., Hollen B. J. , Small A. ( 2009 ). Genus I. Clostridium Prazmowski 1880, 23^AL . . In Bergey’s Manual of Systematic Bacteriology, , 2nd edn., vol. 3 (The Firmicutes), p. 738–828. Edited by De Vos P., Garrity G. M., Jones D., Krieg N. R., Ludwig W., Rainey F. A., Schleifer K. H., Whitman W. B. . New York:: Springer;.
    [Google Scholar]
20. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406–425.[PubMed]
    [Google Scholar]
21. Slobodkina G. B., Panteleeva A. N., Kostrikina N. A., Kopitsyn D. S., Bonch-Osmolovskaya E. A., Slobodkin A. I. ( 2013 ). Tepidibacillus fermentans gen. nov., sp. nov.: a moderately thermophilic anaerobic and microaerophilic bacterium from an underground gas storage. . Extremophiles 17, 833–839. [View Article] [PubMed]
    [Google Scholar]
22. Smibert R. M., Krieg N. R. ( 1994 ). Phenotypic characterization. . In Methods for General and Molecular Bacteriology, pp. 607–651. Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. . Washington, DC:: American Society for Microbiology;.
    [Google Scholar]
23. Tamura K., Nei M. ( 1993 ). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. . Mol Biol Evol 10, 512–526.[PubMed]
    [Google Scholar]
24. Tamura K., Nei M., Kumar S. ( 2004 ). Prospects for inferring very large phylogenies by using the neighbor-joining method. . Proc Natl Acad Sci U S A 101, 11030–11035. [View Article] [PubMed]
    [Google Scholar]
25. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 2731–2739. [View Article] [PubMed]
    [Google Scholar]
26. Trueper H. G., Schlegel H. G. ( 1964 ). Sulfur metabolism in Thiorhodaceae I. Quantitative measurements on growing cells of Chromatium okenii . . Antonie van Leeuwenhoek 30, 225–238. [View Article] [PubMed]
    [Google Scholar]