1887

Abstract

A novel Gram-stain-negative, slightly halophilic bacterium, designated strain GASx41, was isolated from soil of the coastal–marine wetland Gomishan in Iran. Cells of strain GASx41 were curved, ring-like or horseshoe-shaped rods and non-motile. Strain GASx41 was strictly aerobic, and catalase- and oxidase-positive. The strain was able to grow at NaCl concentrations of 1–10 % (w/v), with optimum growth occurring at 2.5–3 % (w/v) NaCl. The optimum temperature and pH for growth were 25–30 °C and pH 7.5–8.0. On the basis of 16S rRNA gene sequence analysis, strain GASx41 was shown to belong to the genus within the phylum and showed closest phylogenetic similarity to ‘’ HMD3055 (98.0 %). The DNA G+C content of strain GASx41 was 48.1 mol%. The major cellular fatty acids of strain GASx41 were iso-C, summed feature 4 (iso-C 2-OH and/or Cω7), anteiso-C 2-OH, anteiso-C and iso-C 3-OH, and its polar lipid pattern consisted of phosphatidylethanolamine, phosphatidylcholine and 12 unknown lipids. The only quinone present was menaquinone 7 (MK-7). All these features confirmed the placement of isolate GASx41 within the genus . On the basis of evidence from this study, a novel species of the genus sp. nov., is proposed, with strain GASx41 ( = IBRC-M 10761 = CECT 8341) as the type strain.

Funding
This study was supported by the:
  • Iranian Biological Resource Centre (IBRC) (Award MI-1391-15)
  • Spanish Ministerio de Economía y Competitividad (Award CGL2010-19303)
  • FEDER
  • Junta de Andalucía (Award P10-CVI-6226)
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.058743-0
2014-03-01
2024-04-16
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/64/3/1000.html?itemId=/content/journal/ijsem/10.1099/ijs.0.058743-0&mimeType=html&fmt=ahah

References

  1. Baron E. J., Finegold S. M. ( 1990 ). Bailey and Scott’s Diagnostic Microbiology, , 8th edn.. St. Louis:: Mosby;.
    [Google Scholar]
  2. Cashion P., Holder-Franklin M. A., McCully J., Franklin M. ( 1977 ). A rapid method for the base ratio determination of bacterial DNA. . Anal Biochem 81, 461466. [View Article] [PubMed]
    [Google Scholar]
  3. Euzéby J. P. ( 1998 ). Taxonomic note: necessary correction of specific and subspecific epithets according to Rules 12c and 13b of the International Code of Nomenclature of Bacteria (1990 Revision). . Int J Syst Bacteriol 48, 10731075. [View Article]
    [Google Scholar]
  4. Felsenstein J. ( 1981 ). Evolutionary trees from DNA sequences: a maximum likelihood approach. . J Mol Evol 17, 368376. [View Article] [PubMed]
    [Google Scholar]
  5. Groth I., Schumann P., Weiss N., Martin K., Rainey F. A. ( 1996 ). Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. . Int J Syst Bacteriol 46, 234239. [View Article] [PubMed]
    [Google Scholar]
  6. Harrigan W. F., McCance M. E. ( 1976 ). Laboratory Methods in Food and Dairy Microbiology. London:: Academic Press;.
    [Google Scholar]
  7. Joung Y., Kim H., Kim S. B., Joh K. ( 2013 ). Cyclobacterium jeungdonense sp. nov., isolated from solar saltern. . Int J Syst Evol Microbiol (in press) [View Article] [PubMed]
    [Google Scholar]
  8. Jung Y.-T., Lee J.-S., Yoon J.-H. ( 2013 ). Cyclobacterium caenipelagi sp. nov., isolated from a tidal flat sediment, and emended description of the genus Cyclobacterium . . Int J Syst Evol Microbiol 63, 31583163. [View Article] [PubMed]
    [Google Scholar]
  9. Kämpfer P., Kroppenstedt R. M. ( 1996 ). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. . Can J Microbiol 42, 9891005. [View Article]
    [Google Scholar]
  10. Kim O. S., Cho Y. J., Lee K., Yoon S. H., Kim M., Na H., Park S. C., Jeon Y. S., Lee J. H. & other authors ( 2012 ). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716721. [View Article] [PubMed]
    [Google Scholar]
  11. Lane D. J. ( 1991 ). 16S/23S rRNA sequencing. . In Nucleic Acid Techniques in Bacterial Systematics, pp. 115175. Edited by Stackebrandt E., Goodfellow M. . Chichester:: Wiley;.
    [Google Scholar]
  12. Marmur J. ( 1961 ). A procedure for the isolation of deoxyribonucleic acid from micro-organisms. . J Mol Biol 3, 208218. [View Article]
    [Google Scholar]
  13. Mata J. A., Martínez-Cánovas J., Quesada E., Béjar V. ( 2002 ). A detailed phenotypic characterisation of the type strains of Halomonas species. . Syst Appl Microbiol 25, 360375. [View Article] [PubMed]
    [Google Scholar]
  14. Mesbah M., Premachandran U., Whitman W. B. ( 1989 ). Precise measurement of the G+ C content of deoxyribonucleic acid by high performance liquid chromatography. . Int J Syst Bacteriol 39, 159167. [View Article]
    [Google Scholar]
  15. Murray R. G. E., Doetsch R. N., Robinow C. F. ( 1994 ). Determinative and cytological light microscopy. . In Methods for General and Molecular Bacteriology, pp. 2141. Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. . Washington, DC:: American Society for Microbiology;.
    [Google Scholar]
  16. Nedashkovskaya O. I., Ludwig W. ( 2010 ). Family II Cyclobacteriaceae fam. nov.. In: Bergey’s Manual of Systematic Bacteriology, , 2nd edn., vol. 4, pp. 423440. Edited by Krieg N. R., Staley J. T., Brown D. R., Hedlund B. P., Paster B. J., Ward N. L., Ludwig W., Whitman W. B. . Baltimore:: Williams & Wilkins;.
    [Google Scholar]
  17. Nedashkovskaya O. I., Kim S. B., Lee M. S., Park M. S., Lee K. H., Lysenko A. M., Oh H. W., Mikhailov V. V., Bae K. S. ( 2005 ). Cyclobacterium amurskyense sp. nov., a novel marine bacterium isolated from sea water. . Int J Syst Evol Microbiol 55, 23912394. [View Article] [PubMed]
    [Google Scholar]
  18. Quesada E., Ventosa A., Ruiz-Berraquero F., Ramos-Cormenzana A. ( 1984 ). Deleya halophila, a new species of moderately halophilic bacteria. . Int J Syst Bacteriol 34, 287292. [View Article]
    [Google Scholar]
  19. Raj H. D., Maloy S. R. ( 1990 ). Proposal of Cyclobacterium marinum gen. nov., comb. nov. for a marine bacterium previously assigned to the genus Flectobacillus . . Int J Syst Bacteriol 40, 337347. [View Article]
    [Google Scholar]
  20. Rzhetsky A., Nei M. ( 1992 ). A simple method for estimating and testing minimum-evolution trees. . Mol Biol Evol 9, 945967.
    [Google Scholar]
  21. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406425. [PubMed]
    [Google Scholar]
  22. Shivaji S., Reddy P. V., Rao S. S., Begum Z., Manasa P., Srinivas T. N. ( 2012 ). Cyclobacterium qasimii sp. nov., a psychrotolerant bacterium isolated from Arctic marine sediment. . Int J Syst Evol Microbiol 62, 21332139. [View Article] [PubMed]
    [Google Scholar]
  23. Smibert R. M., Krieg N. R. ( 1994 ). Phenotypic characterization. . In Methods for General and Molecular Bacteriology, pp. 607654. Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. . Washington, DC:: American Society for Microbiology;.
    [Google Scholar]
  24. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 27312739. [View Article] [PubMed]
    [Google Scholar]
  25. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. ( 1997 ). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. . Nucleic Acids Res 25, 48764882. [View Article] [PubMed]
    [Google Scholar]
  26. Tindall B. J., Rosselló-Móra R., Busse H. J., Ludwig W., Kämpfer P. ( 2010 ). Notes on the characterization of prokaryote strains for taxonomic purposes. . Int J Syst Evol Microbiol 60, 249266. [View Article] [PubMed]
    [Google Scholar]
  27. Ventosa A., Quesada E., Rodriguez-Valera F., Ruiz-Berraquero F., Ramos-Cormenzana A. ( 1982 ). Numerical taxonomy of moderately halophilic Gram-negative rods. . J Gen Microbiol 128, 19591968.
    [Google Scholar]
  28. Ying J. Y., Wang B. J., Yang S. S., Liu S. J. ( 2006 ). Cyclobacterium lianum sp. nov., a marine bacterium isolated from sediment of an oilfield in the South China Sea, and emended description of the genus Cyclobacterium . . Int J Syst Evol Microbiol 56, 29272930. [View Article] [PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.058743-0
Loading
/content/journal/ijsem/10.1099/ijs.0.058743-0
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error