Vitellibacter nionensis sp. nov., isolated from a shallow water hydrothermal vent

References

1. Asker D., Beppu T., Ueda K. ( 2007 ). Zeaxanthinibacter enoshimensis gen. nov., sp. nov., a novel zeaxanthin-producing marine bacterium of the family Flavobacteriaceae, isolated from seawater off Enoshima Island, Japan. . Int J Syst Evol Microbiol 57, 837–843. [View Article] [PubMed]
   [Google Scholar]
2. Bernardet J. F., Nakagawa Y., Holmes B. Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes ( 2002 ). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. . Int J Syst Evol Microbiol 52, 1049–1070. [View Article] [PubMed]
   [Google Scholar]
3. Cerny G. ( 1978 ). Studies on aminopeptidase for the distinction of Gram-negative from Gram-positive bacteria. . Eur J Appl Microbiol Biotechnol 5, 113–122. [View Article]
   [Google Scholar]
4. Ezaki T., Hashimoto Y., Yabuuchi E. ( 1989 ). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. . Int J Syst Bacteriol 39, 224–229. [View Article]
   [Google Scholar]
5. Farmer III J. J., Hickman-Brenner F. W. ( 2006 ). The genera Vibrio and Photobacterium . . In The Prokaryotes: a Handbook on the Biology of Bacteria, , 3rd edn., pp 508–563. Edited by Dworkin M., Falkow S., Rosenberg E., Schleifer K. H., Stackebrandt E. . New York:: Springer;. [View Article]
   [Google Scholar]
6. Felsenstein J. ( 1981 ). Evolutionary trees from DNA sequences: a maximum likelihood approach. . J Mol Evol 17, 368–376. [View Article] [PubMed]
   [Google Scholar]
7. Felsenstein J. ( 1985 ). Confidence limits on phylogenies: an approach using the bootstrap. . Evolution 39, 783–789. [View Article]
   [Google Scholar]
8. Fitch W. M. ( 1971 ). Toward defining the course of evolution: minimum change for a specific tree topology. . Syst Zool 20, 406–416. [View Article]
   [Google Scholar]
9. Kämpfer P., Buczolits S., Albrecht A., Busse H.-J., Stackebrandt E. ( 2003 ). Towards a standardized format for the description of a novel species (of an established genus): Ochrobactrum gallinifaecis sp. nov.. Int J Syst Evol Microbiol 53, 893–896. [View Article] [PubMed]
   [Google Scholar]
10. Khandeparker R., Verma P., Meena R. M., Deobagkar D. D. ( 2011 ). Phylogenetic diversity of carbohydrate degrading culturable bacteria from Mandovi and Zuari estuaries, Goa, west coast of India. . Estuar Coast Shelf Sci 95, 359–366. [View Article]
    [Google Scholar]
11. Kim B. S., Kim O. S., Moon E. Y., Chun J. ( 2010 ). Vitellibacter aestuarii sp. nov., isolated from tidal-flat sediment, and an emended description of the genus Vitellibacter . . Int J Syst Evol Microbiol 60, 1989–1992. [View Article] [PubMed]
    [Google Scholar]
12. Kim O. S., Cho Y. J., Lee K., Yoon S. H., Kim M., Na H., Park S. C., Jeon Y. S., Lee J. H. & other authors ( 2012 ). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716–721. [View Article] [PubMed]
    [Google Scholar]
13. Lane D. J. ( 1991 ). 16S/23S rRNA sequencing. . In Nucleic Acid Techniques in Bacterial Systematic, pp. 115–175. Edited by Stackebrandt E., Goodfellow M. . New York:: Wiley;.
    [Google Scholar]
14. Mesbah M., Premachandran U., Whitman W. B. ( 1989 ). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. . Int J Syst Bacteriol 39, 159–167. [View Article]
    [Google Scholar]
15. Minnikin D. E., O’Donnell A. G., Goodfellow M., Alderson G., Athalye M., Schaal A., Parlett J. H. ( 1984 ). An integrated procedure for the extraction of isoprenoid quinones and polar lipids. . J Microbiol Methods 2, 233–241. [View Article]
    [Google Scholar]
16. Nedashkovskaya O. I., Suzuki M., Vysotskii M. V., Mikhailov V. V. ( 2003 ). Vitellibacter vladivostokensis gen. nov., sp. nov., a new member of the phylum Cytophaga-Flavobacterium-Bacteroides. . Int J Syst Evol Microbiol 53, 1281–1286. [View Article] [PubMed]
    [Google Scholar]
17. Park S., Lee K. C., Bae K. S., Yoon J. H. ( 2014 ). Vitellibacter soesokkakensis sp. nov., isolated from the junction between the ocean and a freshwater spring and emended description of the genus Vitellibacter . . Int J Syst Evol Microbiol 64, 588–593. [View Article] [PubMed]
    [Google Scholar]
18. Reichenbach H. ( 1992 ). The order Cytophagales . . In The Prokaryotes, , 2nd edn., vol. 4, pp. 3631–3675. Edited by Balows A., Trüper H. G., Dworkin M., Harder W., Schleifer K-H. . New York:: Springer;. [View Article]
    [Google Scholar]
19. Reichenbach H., Kohl W., Böttger-Vetter A., Achenbach H. ( 1980 ). Flexirubin-type pigments in Flavobacterium . . Arch Mirobiol 126, 291–293.
    [Google Scholar]
20. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406–425.[PubMed]
    [Google Scholar]
21. Sasser M. ( 1990 ). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. . Newark, DE:: MIDI Inc;.
    [Google Scholar]
22. Smibert R. M., Krieg N. R. ( 1994 ). Phenotypic characterization. . In Methods for General and Molecular Bacteriology, pp. 607–654. Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. . Washington, DC:: American Society for Microbiology;.
    [Google Scholar]
23. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 2731–2739. [View Article] [PubMed]
    [Google Scholar]
24. Thompson J. D., Higgins D. G., Gibson T. J. ( 1994 ). clustal_w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. . Nucleic Acids Res 22, 4673–4680. [View Article] [PubMed]
    [Google Scholar]