1887

Abstract

Several orange- and yellow-pigmented, halophilic, strictly aerobic, chemoheterotrophic, Gram-negative strains were isolated during investigations of maritime Antarctic habitats, including coastal fast sea-ice brine and algae, crustaceans and quartz stone sublithic cyanobacterial biofilms. Isolates investigated in this study belonged to the marine clade of the family and represented lineages that were either distinct from species with validly published names or appeared to be distinct species within existing genera. A polyphasic taxonomic analysis demonstrated the novelty of these strains, and several new taxa are proposed. Strains from quartz stone sublithic communities were grouped into two new genera designated gen. nov. and gen. nov. The genus included the species sp. nov. (type species; type strain G#7=ACAM 1070=CIP 108525) and sp. nov. (type strain Y4-5=ACAM 1063=CIP 108526). The genus contained a single species designated sp. nov. (type strain P7=ACAM 1064=CIP 108527). A novel bacterial strain isolated from the lake-dwelling, calanoid copepod was given the name gen. nov., sp. nov. (type strain DJ3=ACAM 1055=CIP 108538). Four novel species of the genus were discovered, sp. nov. (type strain APA-1=ACAM 1056=CIP 108533) and sp. nov. (type strain ADA-4=ACAM 1058=CIP 108535), which were isolated from the carapace surfaces of sea-ice algae-feeding amphipods, and sp. nov. (type strain IC164=ACAM 1057=CIP 108536) and sp. nov. (type strain HFD=ACAM 1059=CIP 108534), which were isolated from sea-ice brines. Several other novel species were also isolated from sea-ice samples, including two novel species of the genus , sp. nov. (type strain IC158=ACAM 1054=CIP 108531) and sp. nov. (type strain IC162=ACAM 1053=CIP 108532), as well as three novel species of the genus , sp. nov. (type strain IC157=ACAM 1062=CIP 108530), sp. nov. (type strain IC148=ACAM 1060=CIP 108529) and sp. nov. (type strain IC154=ACAM 1061=CIP 108528).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.63527-0
2005-07-01
2024-04-19
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/55/4/ijs551471.html?itemId=/content/journal/ijsem/10.1099/ijs.0.63527-0&mimeType=html&fmt=ahah

References

  1. Abell G. C. J., Bowman J. P. 2005; Ecological and biogeographic relationships of class Flavobacteria in the Southern Ocean. FEMS Microbiol Ecol 51:265–277 [CrossRef]
    [Google Scholar]
  2. Bernardet J.-F., Segers P., Vancanneyt M., Berthe F., Kersters K., Vandamme P. 1996; Cutting a Gordian knot: emended classification and description of the genus Flavobacterium , emended description of the family Flavobacteriaceae , and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int J Syst Bacteriol 46:128–148 [CrossRef]
    [Google Scholar]
  3. Bernardet J.-F., Nakagawa Y., Holmes B. 2002; Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52:1049–1070 [CrossRef]
    [Google Scholar]
  4. Bowman J. P. 2000; Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50:1861–1868
    [Google Scholar]
  5. Bowman J. P. 2004; Psychrophilic prokaryote structural–functional relationships, biogeography and evolution within marine sediment. Cell Mol Biol 50:503–515
    [Google Scholar]
  6. Bowman J. P., McCuaig R. D. 2003; Diversity and biogeography of prokaryotes dwelling in Antarctic continental shelf sediment. Appl Environ Microbiol 69:2463–2484 [CrossRef]
    [Google Scholar]
  7. Bowman J. P., Nichols D. S. 2002; Aequorivita gen. nov., a member of the family Flavobacteriaceae isolated from terrestrial and marine Antarctic habitats. Int J Syst Evol Microbiol 52:1533–1541 [CrossRef]
    [Google Scholar]
  8. Bowman J. P., Nowak B. 2004; Salmonid gill bacteria and their relationship to amoebic gill disease. J Fish Dis 27:483–492 [CrossRef]
    [Google Scholar]
  9. Bowman J. P., McCammon S. A., Brown J. L., Nichols P. D., McMeekin T. A. 1997a; Psychroserpens burtonensis gen. nov., sp. nov., and Gelidibacter algens gen. nov., sp. nov., psychrophilic bacteria isolated from Antarctic lacustrine and sea ice habitats. Int J Syst Bacteriol 47:670–677 [CrossRef]
    [Google Scholar]
  10. Bowman J. P., McCammon S. A., Brown M. V., Nichols D. S., McMeekin T. A. 1997b; Diversity and association of psychrophilic bacteria in Antarctic sea ice. Appl Environ Microbiol 63:3068–3078
    [Google Scholar]
  11. Bowman J. P., McCammon S. A., Lewis T., Skerratt J. H., Brown J. L., Nichols D. S., McMeekin T. A. 1998; Description of Psychroflexus torquis gen. nov., sp. nov., a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense (Dobson et al . 1993) as Psychroflexus gondwanense gen. nov., comb. nov. Microbiology 144:1601–1609 [CrossRef]
    [Google Scholar]
  12. Bowman J. P., Mancuso Nichols C., Gibson J. A. E. 2003; Algoriphagus ratkowskyi gen. nov., sp. nov., Brumimicrobium glaciale gen. nov., sp. nov., Cryomorpha ignava gen. nov., sp. nov. and Crocinitomix catalasitica gen. nov., sp. nov., novel flavobacteria isolated from various polar habitats. Int J Syst Evol Microbiol 53:1343–1355 [CrossRef]
    [Google Scholar]
  13. Brinkmeyer R., Knittel K., Jurgens J., Weyland H., Amann R., Helmke E. 2003; Diversity and structure of bacterial communities in arctic versus antarctic pack ice. Appl Environ Microbiol 69:6610–6619 [CrossRef]
    [Google Scholar]
  14. Brown M. V., Bowman J. P. 2001; A molecular phylogenetic survey of polar sea ice microbial communities (SIMCO. FEMS Microbiol Ecol 35:267–275 [CrossRef]
    [Google Scholar]
  15. Bruns A., Rohde M., Berthe-Corti L. 2001; Muricauda ruestringensis gen. nov. sp. nov. a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment. Int J Syst Evol Microbiol 511997–2006 [CrossRef]
    [Google Scholar]
  16. Cho J.-C., Giovannoni S. J. 2003; Croceibacter atlanticus gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae . Syst Appl Microbiol 26:76–83 [CrossRef]
    [Google Scholar]
  17. Cho J.-C., Giovannoni S. J. 2004; Robiginitalea biformata gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae with a higher G+C content. Int J Syst Evol Microbiol 54:1101–1106 [CrossRef]
    [Google Scholar]
  18. Garrity G. M., Holt J. G. 2001; The road map to the Manual . In Bergey's Manual of Systematic Bacteriology , 2nd edn. vol 1 pp  119–166 Edited by Boone D. R., Castenholz R. W., Garrity G. M. New York: Springer;
    [Google Scholar]
  19. Gosink J. J., Woese C. R., Staley J. T. 1998; Polaribacter gen. nov., with three new species, P.irgensii sp. nov., P. franzmannii sp.nov. and P. filamentus sp. nov.,gas vacuolate polar marine bacteria of the Cytophaga–Flavobacterium–Bacteroides group and reclassification of ‘ Flectobacillus glomeratus ’ as Polaribacter glomeratus comb. nov. Int J Syst Bacteriol 48:223–235 [CrossRef]
    [Google Scholar]
  20. Huß V. A. R., Festl H., Schleifer K. H. 1983; Studies on the spectrophotometric determination of DNA hybridisation from renaturation rates. Syst Appl Microbiol 4:184–192 [CrossRef]
    [Google Scholar]
  21. Ivanova E. P., Nedashkovskaya O. I., Chun J. 7 other authors 2001; Arenibacter gen. nov., new genus of the family Flavobacteriaceae and description of a new species, Arenibacter latericius sp. nov. Int J Syst Evol Microbiol 51:1987–1995 [CrossRef]
    [Google Scholar]
  22. Ivanova E. P., Alexeeva Y. V., Flavier S., Wright J. P., Zhukova N. V., Gorshkova N. M., Mikhailov V. V., Nicolau D. V., Christen R. 2004; Formosa algae gen. nov., sp. nov. a novel member of the family Flavobacteriaceae . Int J Syst Evol Microbiol 54705–711 [CrossRef]
    [Google Scholar]
  23. Junge K., Eicken H., Deming J. W. 2004; Bacterial activity at −2 to −20 °C in Arctic wintertime sea ice. Appl Environ Microbiol 70:550–557 [CrossRef]
    [Google Scholar]
  24. Kirchman D. L. 2002; The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol Ecol 39:91–100
    [Google Scholar]
  25. Macián M. C., Pujalte M. J., Márquez M. C., Ludwig W., Ventosa A., Garay E., Schleifer K. H. 2002; Gelidibacter mesophilus sp. nov., a novel marine bacterium in the family Flavobacteriaceae . Int J Syst Evol Microbiol 52:1325–1329 [CrossRef]
    [Google Scholar]
  26. Marmur J., Doty P. 1962; Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5:109–118 [CrossRef]
    [Google Scholar]
  27. Moss C. W., Guerrant G. O. 1983; Separation of bacterial ubiquinones by reverse phase high pressure liquid chromatography. J Clin Microbiol 18:15–17
    [Google Scholar]
  28. Nedashkovskaya O. I., Kim S. B., Han S. K. 7 other authors 2003a; Mesonia algae gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from the green alga Acrosiphonia sonderi (Kütz) Kornm. Int J Syst Evol Microbiol 53:1967–1971 [CrossRef]
    [Google Scholar]
  29. Nedashkovskaya O. I., Suzuki M., Vysotskii M. V., Mikhailov V. V. 2003b; Vitellibacter vladivostokensis gen. nov., sp. nov., a new member of the phylum Cytophaga Flavobacterium Bacteroides . Int J Syst Evol Microbiol 53:1281–1286 [CrossRef]
    [Google Scholar]
  30. Nedashkovskaya O. I., Kim S. B., Han S. K. 7 other authors 2004a; Maribacter gen. nov., a new member of the family Flavobacteriaceae , isolated from marine habitats, containing the species Maribacter sedimenticola sp.nov., Maribacter aquivivus sp. nov., Maribacter orientalis sp. nov. and Maribacter ulvicola sp. nov. Int J Syst Evol Microbiol 54:1017–1023 [CrossRef]
    [Google Scholar]
  31. Nedashkovskaya O. I., Kim S. B., Han S. K., Rhee M. S., Lysenko A. M., Falsen E., Frolova G. M., Mikhailov V. V., Bae K. S. 2004b; Ulvibacter litoralis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the green alga Ulva fenestrata . Int J Syst Evol Microbiol 54:119–123 [CrossRef]
    [Google Scholar]
  32. Nedashkovskaya O. I., Kim S. B., Han S. K. 7 other authors 2004c; Algibacter lectus gen. nov., sp. nov. a novel member of the family Flavobacteriaceae isolated from green algae. Int J Syst Evol Microbiol 54:1257–1261 [CrossRef]
    [Google Scholar]
  33. Nedashkovskaya O. I., Kim S. B., Han S. K. & 9 other authors (2005a). Winogradskyella thalassocola gen. nov., sp. nov., Winogradskyella epiphytica sp. nov. and Winogradskyella eximia sp. nov. marine bacteria of the family Flavobacteriaceae . Int J Syst Evol Microbiol 55:49–55 [CrossRef]
    [Google Scholar]
  34. Nedashkovskaya O. I., Kim S. B., Lee K. H., Mikhailov V. V., Bae K. S. 2005b; Gillisia mitskevichiae sp. nov., a novel bacterium of the family Flavobacteriaceae , isolated from sea water. Int J Syst Evol Microbiol 55:321–323 [CrossRef]
    [Google Scholar]
  35. Nedashkovskaya O. I., Kim S. B., Lysenko A. M., Frolova G. M., Mikhailov V. V., Bae K. S. 2005c; Bizionia paragorgiae gen. nov., sp. nov. a novel member of the family Flavobacteriaceae isolated from the soft coral Paragoria arborea . Int J Syst Evol Microbiol 55:375–378 [CrossRef]
    [Google Scholar]
  36. Sly L. I., Blackall L. L., Kraat P. C., Tian-Shen T., Sangkhobol V. 1986; The use of second derivative plots for the determination of mol% guanine plus cytosine of DNA by the thermal denaturation method. J Microbiol Methods 5:139–156 [CrossRef]
    [Google Scholar]
  37. Smith M. C., Bowman J. P., Scott F. J., Line M. A. 2000; Sublithic bacteria associated with Antarctic quartz stones. Antarct Sci 12:177–184
    [Google Scholar]
  38. Sohn J. H., Lee J.-H., Yi H., Chun J., Bae K. S., Ahn T.-Y., Kim S.-J. 2004; Kordia algicida gen. nov., sp. nov. an algicidal bacterium isolated from red tide. Int J Syst Evol Microbiol 54:675–680 [CrossRef]
    [Google Scholar]
  39. Suzuki M., Nakagawa Y., Harayama S., Yamamoto S. 2001; Phylogenetic analysis and taxonomic study of marine Cytophaga -like bacteria: proposal for Tenacibaculum gen. nov. with Tenacibaculum maritimum comb.nov. and Tenacibaculum ovolyticum comb. nov., and description of Tenacibaculum mesophilum sp.nov. and Tenacibaculum amylolyticum sp. nov. Int J Syst Evol Microbiol 51:1639–1652 [CrossRef]
    [Google Scholar]
  40. Van Trappen S., Mergaert J., Van Eygen S., Dawyndt P., Cnockaert M. C., Swings J. 2002; Diversity of 746 heterotrophic bacteria isolated from microbial mats from ten Antarctic lakes. Syst Appl Microbiol 25:603–610 [CrossRef]
    [Google Scholar]
  41. Van Trappen S., Vandecandelaere I., Mergaert J., Swings J. 2004; Gillisia limnaea gen. nov. sp. nov. a new member of the family Flavobacteriaceae isolated from a microbial mat in Lake Fryxell, Antarctica. Int J Syst Evol Microbiol 54445–448 [CrossRef]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.63527-0
Loading
/content/journal/ijsem/10.1099/ijs.0.63527-0
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error