Niastella koreensis gen. nov., sp. nov. and Niastella yeongjuensis sp. nov., novel members of the phylum Bacteroidetes, isolated from soil cultivated with Korean ginseng

References

1. Altschul S. F., Madden T. L., Schaffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J. 1997; Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402 [CrossRef]
   [Google Scholar]
2. Bernardet J. F., Segers P., Vancanneyt M., Berthe F., Kersters K., Vandamme P. 1996; Cutting a Gordian knot: emended classification and description of the genus Flavobacterium , emended description of the family Flavobacteriaceae , and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int J Syst Bacteriol 46:128–148 [CrossRef]
   [Google Scholar]
3. Breznak J. A., Costilow R. N. 1994; Physicochemical factors in growth. In Methods for General and Molecular Bacteriology pp  137–154 Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. Washington, DC: American Society for Microbiology;
   [Google Scholar]
4. Fautz E., Reichenbach H. 1980; A simple test for flexirubin-type pigments. FEMS Microbiol Lett 8:87–91 [CrossRef]
   [Google Scholar]
5. Fujita T., Okamoto M., Kosako Y., Okuhara M. 1996; Flexibacter japonensis sp. nov., a new species that produces a novel inhibitor of human leukocyte elastase isolated from soil. Curr Microbiol 33:89–93 [CrossRef]
   [Google Scholar]
6. Groth I., Schumann P., Weiss N., Martin K., Rainey F. A. 1996; Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46:234–239 [CrossRef]
   [Google Scholar]
7. Hiraishi A. 1992; Direct automated sequencing of 16S rDNA amplified by polymerase chain reaction from bacterial cultures without DNA purification. Lett Appl Microbiol 15:210–213 [CrossRef]
   [Google Scholar]
8. Holmes B., Owen R. J., McMeekin T. A. 1984; Genus Flavobacterium Bergey, Harrison, Breed, Hammer and Huntoon 1923, 97^AL . In Bergey's Manual of Systematic Bacteriology vol 1 pp  353–361 Edited by Krieg N. R., Holt J. G. Baltimore: Williams & Wilkins;
   [Google Scholar]
9. Kumar S., Tamura K., Nei M. 2004; mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150–163 [CrossRef]
   [Google Scholar]
10. Kwon S. W., Kim J. S., Park I. C., Yoon S. H., Park D. H., Lim C. K., Go S. J. 2003; Pseudomonas koreensis sp. nov., Pseudomonas umsongensis sp. nov. and Pseudomonas jinjuensis sp. nov., novel species from farm soils in Korea. Int J Syst Evol Microbiol 53:21–27 [CrossRef]
    [Google Scholar]
11. LaMontagne M. G., Schimel J. P., Holden P. A. 2003; Comparison of subsurface and surface soil bacterial communities in California grassland as assessed by terminal restriction fragment length polymorphisms of PCR-amplified 16S rRNA genes. Microb Ecol 46:216–227 [CrossRef]
    [Google Scholar]
12. MacFaddin J. F. 2000; Biochemical Tests for Identification of Medical Bacteria . , 3rd edn. pp  424–438 Baltimore: Lippincott Williams & Wilkins;
13. Mesbah M., Premachandran U., Whitman W. B. 1989; Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167 [CrossRef]
    [Google Scholar]
14. Nakagawa Y., Yamasato K. 1993; Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis. J Gen Microbiol 139:1155–1161 [CrossRef]
    [Google Scholar]
15. Nakagawa Y., Sakane T., Suzuki M., Hatano K. 2002; Phylogenetic structure of the genera Flexibacter , Flexithrix , and Microscilla deduced from 16S rRNA sequence analysis. J Gen Appl Microbiol 48:155–165 [CrossRef]
    [Google Scholar]
16. Reichenbach H. 1989a; Genus I. Cytophaga Winogradsky 1929, 577^AL emend. In Bergey's Manual of Systematic Bacteriology vol  3 pp  2015–2050 Edited by Staley J. T., Bryant M. P., Pfennig N., Holt J. G. Baltimore: Williams & Wilkins;
    [Google Scholar]
17. Reichenbach H. 1989b; Genus Flexibacter Soriano 1945, 92^AL emend. In Bergey's Manual of Systematic Bacteriology vol  3 pp  2061–2071 Edited by Staley J. T., Bryant M. P., Pfennig N., Holt J. G. Baltimore: Williams & Wilkins;
    [Google Scholar]
18. Sangkhobol V., Skerman V. B. D. 1981; Chitinophaga , a new genus of chitinolytic myxobacteria. Int J Syst Bacteriol 31:285–293 [CrossRef]
    [Google Scholar]
19. Seldin L., Dubnau D. 1985; Deoxyribonucleic acid homology among Bacillus polymyxa , Bacillus macerans , Bacillus azotofixans , and other nitrogen-fixing Bacillus strains. Int J Syst Bacteriol 35:151–154 [CrossRef]
    [Google Scholar]
20. Sly L. I., Taghavi M., Fegan M. 1998; Phylogenetic heterogeneity within the genus Herpetosiphon : transfer of the marine species Herpetosiphon cohaerens , Herpetosiphon nigricans and Herpetosiphon persicus to the genus Lewinella gen. nov. in the Flexibacter – Bacteroides – Cytophaga phylum. Int J Syst Bacteriol 48:731–737 [CrossRef]
    [Google Scholar]
21. Sly L. I., Taghavi M., Fegan M. 1999; Phylogenetic position of Chitinophaga pinensis in the Flexibacter – Bacteroides – Cytophaga phylum. Int J Syst Bacteriol 49:479–481 [CrossRef]
    [Google Scholar]
22. Smibert R. M., Krieg N. R. 1994; Phenotypic characterization. In Methods for General and Molecular Bacteriology pp  607–654 Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. Washington, DC: American Society for Microbiology;
    [Google Scholar]
23. Stackebrandt E., Goebel B. M. 1994; Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846–849 [CrossRef]
    [Google Scholar]
24. Vandamme P., Bernardet J.-F., Segers P., Kersters K., Holmes B. 1994; New perspectives in the classification of the flavobacteria: description of Chryseobacterium gen.nov., Bergeyella gen. nov., and Empedobacter nom. rev. Int J Syst Bacteriol 44:827–831 [CrossRef]
    [Google Scholar]
25. Xie C. H., Yokota A. 2006; Reclassification of [ Flavobacterium ] ferrugineum as Terrimonas ferruginea gen. nov., comb. nov., and description of Terrimonas lutea sp. nov., isolated from soil. Int J Syst Evol Microbiol 56:1117–1121 [CrossRef]
    [Google Scholar]