Amycolatopsis australiensis sp. nov., an actinomycete isolated from arid soils

References

1. Bala S., Khanna R., Dadhwal M., Prabagaran S. R., Shivaji S., Cullum J., Lal R. 2004; Reclassification of Amycolatopsis mediterranei DSM 46095 as Amycolatopsis rifamycinica sp. nov. Int J Syst Evol Microbiol 54:1145–1149 [CrossRef]
   [Google Scholar]
2. Collins M. D. 1994; Isoprenoid quinones. In Chemical Methods in Prokaryotic Systematics pp  265–309 Edited by Goodfellow M., O'Donnell A. G. Chichester: Wiley;
   [Google Scholar]
3. de Boer L., Dijkhuizen L., Grobben G., Goodfellow M., Stackebrandt E., Parlett J. H., Whitehead D., Witt D. 1990; Amycolatopsis methanolica sp. nov., a facultatively methylotrophic actinomycete. Int J Syst Bacteriol 40:194–204 [CrossRef]
   [Google Scholar]
4. Embley T. M., O'Donnell A. G., Rostron J., Goodfellow M. 1988; Chemotaxonomy of wall type-IV actinomycetes which lack mycolic acids. J Gen Microbiol 134:953–960
   [Google Scholar]
5. Felsenstein J. 1985; Confidence limits on phylogeny: an appropriate use of the bootstrap. Evolution 39:783–791 [CrossRef]
   [Google Scholar]
6. Felsenstein J. 1993 phylip (phylogeny inference package), version 3.5.1 http://evolution.genetics.washington.edu/phylip/
7. Fitch W. M. 1971; Towards defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406–416 [CrossRef]
   [Google Scholar]
8. Fitch W. M., Margoliash E. 1967; Construction of phylogenetic trees: a method based on mutation distances as estimated from cytochrome c sequences is of general applicability. Science 155:279–284 [CrossRef]
   [Google Scholar]
9. Goodfellow M., Brown A. B., Cai J. P., Chun J. S., Collins M. D. 1997; Amycolatopsis japonicum sp. nov., an actinomycete producing ( S , S )- N , N ′-ethylenediaminedisuccinic acid. Syst Appl Microbiol 20:78–84 [CrossRef]
   [Google Scholar]
10. Goodfellow M., Kim S. B., Minnikin D. E., Whitehead D., Zhou Z. H., Mattinson-Rose A. D. 2001; Amycolatopsis sacchari sp. nov., a moderately thermophilic actinomycete isolated from vegetable matter. Int J Syst Evol Microbiol 51:187–193
    [Google Scholar]
11. Huang Y., Qi W. H., Lu Z. T., Liu Z. H., Goodfellow M. 2001; Amycolatopsis rubida sp. nov., a new Amycolatopsis species from soil. Int J Syst Evol Microbiol 51:1093–1097 [CrossRef]
    [Google Scholar]
12. Huang Y., Pasciak M., Liu Z. H., Xie Q., Gamian A. 2004; Amycolatopsis palatopharyngis sp. nov., a potentially pathogenic actinomycete isolated from a human clinical source. Int J Syst Evol Microbiol 54:359–363 [CrossRef]
    [Google Scholar]
13. Jones K. L. 1949; Fresh isolates of actinomycetes in which the presence of sporogenous aerial mycelia is a fluctuating characteristic. J Bacteriol 57:141–145
    [Google Scholar]
14. Jukes T. H., Cantor C. R. 1969; Evolution of protein molecules. In Mammalian Protein Metabolism pp  21–132 Edited by Munro H. N. New York: Academic Press;
    [Google Scholar]
15. Kim S. B., Goodfellow M. 1999; Reclassification of Amycolatopsis rugosa Lechevalier et al. 1986 as Prauserella rugosa gen. nov., comb. nov. Int J Syst Bacteriol 49:507–512 [CrossRef]
    [Google Scholar]
16. Kim B., Sahin N., Tan G. Y. A., Zakrzewska-Czerwinska J., Goodfellow M. 2002; Amycolatopsis eurytherma sp. nov., a thermophilic actinomycete isolated from soil. Int J Syst Evol Microbiol 52:889–894 [CrossRef]
    [Google Scholar]
17. Labeda D. P., Donahue J. M., Williams N. M., Sells S. F., Henton M. M. 2003; Amycolatopsis kentuckyensis sp. nov., Amycolatopsis lexingtonensis sp. nov. and Amycolatopsis pretoriensis sp. nov., isolated from equine placentas. Int J Syst Evol Microbiol 531601–1605 [CrossRef]
    [Google Scholar]
18. Lechevalier M. P., Lechevalier H. A. 1970; Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20:435–443 [CrossRef]
    [Google Scholar]
19. Lechevalier M. P., De Bièvre C., Lechevalier H. A. 1977; Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5:249–260 [CrossRef]
    [Google Scholar]
20. Lechevalier M. P., Prauser H., Labeda D. P., Ruan J. S. 1986; Two new genera of nocardioform actinomycetes – Amycolata gen.nov. and Amycolatopsis gen. nov. Int J Syst Bacteriol 36:29–37 [CrossRef]
    [Google Scholar]
21. Lee S. D. 2006; Amycolatopsis jejuensis sp. nov. and Amycolatopsis halotolerans sp. nov., novel actinomycetes isolated from a natural cave. Int J Syst Evol Microbiol 56:549–553 [CrossRef]
    [Google Scholar]
22. Minnikin D. E., O'Donnell A. G., Goodfellow M., Alderson G., Athalye M., Schaal A., Parlett J. H. 1984; An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233–241 [CrossRef]
    [Google Scholar]
23. Saintpierre-Bonaccio D., Amir H., Pineau R., Tan G. Y. A., Goodfellow M. 2005; Amycolatopsis plumensis sp. nov., a novel bioactive actinomycete isolated from a New-Caledonian brown hypermagnesian ultramafic soil. Int J Syst Evol Microbiol 55:2057–2061 [CrossRef]
    [Google Scholar]
24. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for constructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
25. Schaal K. P. 1985; Identification of clinically significant actinomycetes and related bacteria using chemical techniques. In Chemical Methods in Bacterial Systematics pp  359–381 Edited by Goodfellow M., Minnikin D. E. London: Academic Press;
    [Google Scholar]
26. Shirling E. B., Gottlieb D. 1966; Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313–340 [CrossRef]
    [Google Scholar]
27. Tan G. Y. A., Ward A. C., Goodfellow M. 2006; Exploration of Amycolatopsis diversity in soil using genus-specific primers and novel selective media. Syst Appl Microbiol (in press)
    [Google Scholar]
28. Uchida K., Kudo T., Suzuki K., Nakase T. 1999; A new rapid method of glycolate test by diethyl ether extraction, which is applicable to a small amount of bacterial cells of less than one milligram. J Gen Appl Microbiol 45:49–56 [CrossRef]
    [Google Scholar]
29. Wayne L. G., Brenner D. J., Colwell R. R. 9 other authors 1987; International Committee on Systematic Bacteriology. Report of the ad hoc committee on the reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464 [CrossRef]
    [Google Scholar]
30. Wink J. M., Kroppenstedt R. M., Ganguli B. N., Nadkarni S. R., Schumann P., Seibert G., Stackebrandt E. 2003; Three new antibiotic producing species of the genus Amycolatopsis , Amycolatopsis balhimycina sp.nov., A. tolypomycina sp. nov., A. vancoresmycina sp.nov., and description of Amycolatopsis keratiniphila subsp. keratiniphila subsp.nov. and A.keratiniphila subsp. nogabecina subsp. nov.. Syst Appl Microbiol 26: 38–46 [CrossRef]
    [Google Scholar]
31. Yassin A. F., Schaal K. P., Brzezinka H., Goodfellow M., Pulverer G. 1991; Menaquinone patterns of Amycolatopsis species. Zentralbl Bakteriol 274:465–470 [CrossRef]
    [Google Scholar]
32. Yassin A. F., Haggenei B., Budzikiewicz H., Schaal K. P. 1993; Fatty acid and polar lipid composition of the genus Amycolatopsis : application of fast atom bombardment-mass spectrometry to structure analysis of underivatized phospholipids. Int J Syst Bacteriol 43:414–420 [CrossRef]
    [Google Scholar]