1887

Abstract

Indigo-reducing, obligately alkaliphilic strains A11, F11 and F12 were isolated from indigo fermentation liquor obtained from Tokushima Prefecture, Shikoku, Japan. The isolates grew at pH 9.0–12.3, but not at pH 7.0–8.0. The optimum pH range for growth was 9.5–11.5. They were Gram-negative, facultatively anaerobic, rod-shaped strains with peritrichous flagella. The isolates grew in 0–14 % (w/v) NaCl, with optimum growth at 1–11 %. They grew at temperatures of 15–35 °C with optimum growth at around 20–30 °C. -Lactate was the major end product from -glucose. No quinones were detected. The peptidoglycan type was A4, -Lys (-Orn)–-Asp. The major cellular fatty acids were C, C7 and C9. The DNA G+C contents were 47.0–47.8 mol%. Phylogenetic analysis based on 16S rRNA gene sequence data indicated that the isolates belong to the genus . DNA–DNA hybridization revealed low relatedness values between the isolates and the three phylogenetically most closely related species, , and (<41 %). On the basis of phenotypic characteristics, including hydrolysis of cellulose and fermentation of carbohydrates, and chemotaxonomic characteristics, phylogenetic data and DNA–DNA relatedness data, it is concluded that the isolates merit classification as representatives of a novel species of the genus , for which the name sp. nov. is proposed. The type strain of this species is A11 (=JCM 14232=NCIMB 14253).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.64995-0
2008-04-01
2024-04-18
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/58/4/901.html?itemId=/content/journal/ijsem/10.1099/ijs.0.64995-0&mimeType=html&fmt=ahah

References

  1. Ezaki, T., Hashimoto, Y. & Yabuuchi, E.(1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224–229.[CrossRef] [Google Scholar]
  2. Hugh, R. & Leifson, E.(1953). The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various Gram-negative bacteria. J Bacteriol 66, 24–26. [Google Scholar]
  3. Ishikawa, M., Nakajima, K., Yanagi, M., Yamamoto, Y. & Yamasato, K.(2003).Marinilactibacillus psychrotolerans gen. nov., sp. nov., a halophilic and alkaliphilic marine lactic acid bacterium isolated from marine organisms in temperate and subtropical areas of Japan. Int J Syst Evol Microbiol 53, 711–720.[CrossRef] [Google Scholar]
  4. Ishikawa, M., Nakajima, K., Itamiya, Y., Furukawa, S., Yamasato, Y. & Yamasato, K.(2005).Halolactibacillus halophilus gen. nov., sp. nov. and Halolactibacillus miurensis sp. nov., halophilic and alkaliphilic marine lactic acid bacteria constituting a phylogenetic lineage in Bacillus rRNA group 1. Int J Syst Evol Microbiol 55, 2427–2439.[CrossRef] [Google Scholar]
  5. Kimura, M.(1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111–120.[CrossRef] [Google Scholar]
  6. Marmur, J.(1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208–218.[CrossRef] [Google Scholar]
  7. Nakajima, K., Hirota, K., Nodasaka, Y. & Yumoto, I.(2005).Alkalibacterium iburiense sp. nov., an obligate alkaliphile that reduces an indigo dye. Int J Syst Evol Microbiol 55, 1525–1530.[CrossRef] [Google Scholar]
  8. Ntougias, S. & Russell, N. J.(2001).Alkalibacterium olivoapovliticus gen. nov., sp. nov., a new obligately alkaliphilic bacterium isolated from edible-olive wash waters. Int J Syst Evol Microbiol 51, 1161–1170.[CrossRef] [Google Scholar]
  9. Okada, S., Uchimura, T. & Kozaki, M.(1992).Nyusankin Jikken Manyuaru (Laboratory Manual for Lactic Acid Bacteria) (in Japanese). Tokyo: Asakura-shoten.
  10. Padden, A. N., Dillon, V. M., Edmonds, J., Collins, M. D., Alvarez, N. & John, P.(1999). An indigo-reducing moderate thermophile from a woad vat, Clostridium isatidis sp. nov. Int J Syst Bacteriol 49, 1025–1031.[CrossRef] [Google Scholar]
  11. Saitou, N. & Nei, M.(1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425. [Google Scholar]
  12. Takahara, Y. & Tanabe, O.(1960). Studies on the reduction of indigo in industrial fermentation vat (VII). J Ferment Technol 38, 329–331. [Google Scholar]
  13. Tamaoka, J. & Komagata, K.(1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125–128.[CrossRef] [Google Scholar]
  14. Teather, R. M. & Wood, P. J.(1982). Use of Congo red polysaccharide interaction in enumeration and characterization of cellulolytic bacteria from bovine rumen. Appl Environ Microbiol 43, 777–780. [Google Scholar]
  15. Thompson, J. D., Higgins, D. G. & Gibson, T. J.(1994).clustalw: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673–4680.[CrossRef] [Google Scholar]
  16. Toffin, L., Zink, K., Kato, C., Pignet, P., Bidault, A., Bienvenu, N., Birrien, J.-L. & Prieur, D.(2005).Marinilactibacillus piezotolerans sp. nov., a novel marine lactic acid bacterium isolated from deep sub-seafloor sediment of the Nankai Trough. Int J Syst Evol Microbiol 55, 345–351.[CrossRef] [Google Scholar]
  17. Yumoto, I., Yamazaki, K., Sawabe, T., Nakano, K., Kawasaki, K., Ezura, Y. & Shinano, H.(1998).Bacillus horti sp. nov., a new Gram-negative alkaliphilic bacillus. Int J Syst Bacteriol 48, 565–571.[CrossRef] [Google Scholar]
  18. Yumoto, I., Yamazaki, K., Hishinuma, M., Nodasaka, Y., Suemori, A., Nakajima, K., Inoue, N. & Kawasaki, K.(2001).Pseudomonas alcaliphila sp. nov., a novel facultatively psychrophilic alkaliphile isolated from seawater. Int J Syst Evol Microbiol 51, 349–355. [Google Scholar]
  19. Yumoto, I., Nakamura, A., Iwata, H., Kojima, K., Kusumoto, K., Nodasaka, Y. & Matsuyama, H.(2002).Dietzia psychralcaliphila sp. nov., a novel, facultatively psychrophilic alkaliphile that grows on hydrocarbons. Int J Syst Evol Microbiol 52, 85–90. [Google Scholar]
  20. Yumoto, I., Hirota, K., Nodasak, Y., Yokota, Y., Hoshino, T. & Nakajima, K.(2004).Alkalibacterium psychrotolerans sp. nov., a psychrotolerant obligate alkaliphile that reduces an indigo dye. Int J Syst Evol Microbiol 54, 2379–2383.[CrossRef] [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.64995-0
Loading
/content/journal/ijsem/10.1099/ijs.0.64995-0
Loading

Data & Media loading...

Supplements

vol. , part 4, pp. 901 – 905

Fatty acid profiles of sp. nov. and related species [ PDF] (36 KB)



PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error