1887

Abstract

A novel bacterial strain, designated PMB02, was isolated from a leaf of the tree . Colonies grown on TYG agar plates were circular, pink-pigmented and slow-growing, being 0.2–1.5 mm in diameter after 3 days growth. The cells of strain PMB02 were Gram-negative, aerobic, motile rods that possessed oxidase and catalase activities and grew at 20–30 °C, pH 6–8 and in media containing less than 1 % NaCl. The major respiratory quinone was identified as Q-10. A phylogenetic analysis based on 16S rRNA gene sequence comparisons indicated that strain PMB02 was related to members of the genus . A comparative 16S rRNA gene sequence-based phylogenetic analysis placed the strain in a clade with the species and , with which it showed sequence similarities of 97.7 and 97.4 %, respectively. The values for DNA–DNA hybridization between strain PMB02 and CCM 7218 and GR3 were less than 32 %. On the basis of the phenotypic characterization, the phylogenetic analysis and the DNA–DNA relatedness data, strain PMB02 is considered to represent a novel species of the genus , for which the name sp. nov. is proposed. The type strain is PMB02 (=KCTC 12901=JCM 14648).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.65262-0
2007-12-01
2024-04-20
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/57/12/2849.html?itemId=/content/journal/ijsem/10.1099/ijs.0.65262-0&mimeType=html&fmt=ahah

References

  1. Anesti V., Vohra J., Goonetilleka S., McDonald I. R., Sträubler B., Stackebrandt E., Kelly D. P., Wood A. P. 2004; Molecular detection and isolation of facultatively methylotrophic bacteria, including Methylobacterium podarium sp. nov., from the human foot microflora. Environ Microbiol 6:820–830 [CrossRef]
    [Google Scholar]
  2. Aslam Z., Lee C. S., Kim K.-H., Im W.-T., Ten L. N., Lee S. T. 2007; Methylobacterium jeotgali sp. nov., a non-pigmented, facultatively methylotrophic bacterium isolated from jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 57:566–571 [CrossRef]
    [Google Scholar]
  3. Bousfield I. J., Green P. N. 1985; Reclassification of bacteria of the genus Protomonas Urakami and Komagata 1984 in the genus Methylobacterium (Patt, Cole, and Hanson) emend. Green and Bousfield 1983 Int J Syst Bacteriol 35:209 [CrossRef]
    [Google Scholar]
  4. Corpe W. A., Basile D. V. 1982; Methanol-utilizing bacteria associated with green plants. Dev Ind Microbiol 23:483–494
    [Google Scholar]
  5. Doronina N. V., Trotsenko Y. A., Tourova T. P., Kuznetsov B. B., Leisinger T. 2000; Methylopila helvetica sp. nov. and Methylobacterium dichloromethanicum sp. nov.: novel aerobic facultatively methylotrophic bacteria utilizing dichloromethane. Syst Appl Microbiol 23:210–218 [CrossRef]
    [Google Scholar]
  6. Doronina N. V., Trotsenko Y. A., Kuznetsov B. B., Tourova T. P., Salkinoja-Salonen M. S. 2002; Methylobacterium suomiense sp. nov. and Methylobacterium lusitanum sp. nov., aerobic, pink-pigmented, facultatively methylotrophic bacteria. Int J Syst Evol Microbiol 52:773–776 [CrossRef]
    [Google Scholar]
  7. Ezaki T., Hashimoto Y., Yabuuchi E. 1989; Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224–229 [CrossRef]
    [Google Scholar]
  8. Felsenstein J. 2002 phylip (phylogeny inference package), version 3.6a. Distributed by the author. Department of Genome Sciences University of Washington; Seattle, USA:
    [Google Scholar]
  9. Gallego V., Garcia M. T., Ventosa A. 2005a; Methylobacterium hispanicum sp. nov. and Methylobacterium aquaticum sp. nov., isolated from drinking water. Int J Syst Evol Microbiol 55:281–287 [CrossRef]
    [Google Scholar]
  10. Gallego V., Garcia M. T., Ventosa A. 2005b; Methylobacterium variabile sp. nov., a methylotrophic bacterium isolated from an aquatic environment. Int J Syst Evol Microbiol 55:1429–1433 [CrossRef]
    [Google Scholar]
  11. Gallego V., Garcia M. T., Ventosa A. 2005c; Methylobacterium isbiliense sp. nov., isolated from the drinking water system of Sevilla, Spain. Int J Syst Evol Microbiol 55:2333–2337 [CrossRef]
    [Google Scholar]
  12. Gallego V., Garcia M. T., Ventosa A. 2006; Methylobacterium adhaesivum sp. nov., a methylotrophic bacterium isolated from drinking water. Int J Syst Evol Microbiol 56:339–342 [CrossRef]
    [Google Scholar]
  13. Green P. N. 1992; The genus Methylobacterium . In The Prokaryotes . , 2nd edn. pp 2342–2349 Edited by Balows A., Trüper H. G., Dworkin M., Harder W., Schleifer K. H. New York: Springer;
  14. Green P. N., Bousfield I. J. 1983; Emendation of Methylobacterium Patt, Cole, and Hanson 1976; Methylobacterium rhodinum (Heumann 1962) comb. nov. corrig.; Methylobacterium radiotolerans (Ito & Iizuka 1971) comb. nov., corrig.; and Methylobacterium mesophilicum (Austin & Goodfellow 1979) comb. nov. Int J Syst Bacteriol 33:875–877 [CrossRef]
    [Google Scholar]
  15. Green P. N., Bousfield I. J., Hood D. 1988; Three new Methylobacterium species: M. rhodesianum sp. nov., M. zatmanii sp. nov., and M. fujisawaense sp. nov. Int J Syst Bacteriol 38:124–127 [CrossRef]
    [Google Scholar]
  16. Hirano S. S., Upper C. D. 1991; Bacterial community dynamics. In Microbial Ecology of Leaves pp. 271–294 Edited by Andrews J. H., Hirano S. S. New York: Springer;
    [Google Scholar]
  17. Jourand P., Giraud E., Bena G., Sy A., Willems A., Gillis M., Dreyfus B., de Lajudie P. 2004; Methylobacterium nodulans sp. nov., for a group of aerobic, facultatively methylotrophic, legume root-nodule-forming and nitrogen-fixing bacteria. Int J Syst Evol Microbiol 54:2269–2273 [CrossRef]
    [Google Scholar]
  18. Kim M. K., Im W.-T., Ohta H., Lee M., Lee S.-T. 2005; Sphingopyxis granuli sp. nov., a beta-glucosidase-producing bacterium in the family Sphingomonadaceae in alpha-4 subclass of the Proteobacteria . J Microbiol 43:152–157
    [Google Scholar]
  19. Lidstrom M. E., Chistoserdova L. 2002; Plants in the pink: cytokinin production by Methylobacterium . J Bacteriol 184:1818 [CrossRef]
    [Google Scholar]
  20. Madhaiyan M., Kim B.-Y., Poonguzhali S., Kwon S.-W., Song M.-H., Ryu J.-H., Go S.-J., Koo B.-S., Sa T.-M. 2007; Methylobacterium oryzae sp. nov., an aerobic, pink-pigmented, facultatively methylotrophic, 1-aminocyclopropane-1-carboxylate deaminase-producing bacterium isolated from rice. Int J Syst Evol Microbiol 57:326–331 [CrossRef]
    [Google Scholar]
  21. McDonald I. R., Droning N. V., Trotsenko Y. A., McAnulla C., Murrell J. C. 2001; Hyphomicrobium chloromethanicum sp. nov. and Methylobacterium chloromethanicum sp. nov., chloromethane-utilizing bacteria isolated from a polluted environment. Int J Syst Evol Microbiol 51:119–122
    [Google Scholar]
  22. Mesbah M., Premachandran U., Whitman W. B. 1989; Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167 [CrossRef]
    [Google Scholar]
  23. Ostle A. G., Holt J. G. 1982; Nile blue A as a fluorescent stain for poly-beta-hydroxybutyrate. Appl Environ Microbiol 44:238–241
    [Google Scholar]
  24. Patt T. E., Cole G. C., Hanson R. S. 1976; Methylobacterium , a new genus of facultatively methylotrophic bacteria. Int J Syst Bacteriol 26:226–229 [CrossRef]
    [Google Scholar]
  25. Sasser M. 1990; Identification of bacteria by gas chromatography of cellular fatty acids , MIDI. Technical Note 101: Newark, DE: MIDI;
    [Google Scholar]
  26. Stackebrandt E., Goebel B. M. 1994; Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846–849 [CrossRef]
    [Google Scholar]
  27. Stanier R. Y., Palleroni N. J., Doudoroff M. 1966; The aerobic pseudomonads: a taxonomic study. J Gen Microbiol 43:159–271 [CrossRef]
    [Google Scholar]
  28. Thompson J. D., Higgins D. G., Gibson T. J. 1994; clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680 [CrossRef]
    [Google Scholar]
  29. Urakami T., Araki H. H., Suzuki K., Komogata K. 1993; Further studies of the genus Methylobacterium and description of Methylobacterium aminovorans sp. nov. Int J Syst Bacteriol 43:504–513 [CrossRef]
    [Google Scholar]
  30. Van Aken B., Peres C. M., Lafferty-Doty S., Yoon J. M., Schnoor J. L. 2004; Methylobacterium populi sp. nov., a novel aerobic, pink-pigmented, facultatively methylotrophic, methane-utilizing bacterium isolated from poplar trees ( Populus deltoides × nigra DN34. Int J Syst Evol Microbiol 54:1191–1196 [CrossRef]
    [Google Scholar]
  31. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E. other authors 1987; International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464 [CrossRef]
    [Google Scholar]
  32. Wood A. P., Kelly D. P., McDonald I. R., Jordan S. L., Morgan T. D., Khan S., Murrell J. C., Borodina E. 1998; A novel pink-pigmented facultative methylotroph, Methylobacterium thiocyanatum sp. nov., capable of growth on thiocyanate or cyanate as sole nitrogen sources. Arch Microbiol 169:148–158 [CrossRef]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.65262-0
Loading
/content/journal/ijsem/10.1099/ijs.0.65262-0
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error