1887

Abstract

sp. nov. is described as a novel yeast species in the family Dipodascaceae to accommodate an isolate recovered from sediments collected on the deep-sea floor in the north-western Pacific Ocean. In the clade comprising the genera , and , this is the only species that forms asci that bear four ascospores. The ascospore is surrounded by an irregular exosporium wall, similar to what is observed in the genus , but they are released by rupture, which is characteristic of and not . is remarkably divergent (>10 % difference) in its D1/D2 26S rDNA sequence from any other known species. Although maximum-likelihood analysis of combined 18S rDNA and D1/D2 26S rDNA sequences cannot elucidate a reliable position for this species, it was placed among , , and , which also have morphological and physiological affinity with the species. The species is homothallic. The type strain of sp. nov. is strain SY-277 (=NBRC 103136 =CBS 10071).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.65471-0
2008-04-01
2024-04-24
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/58/4/1040.html?itemId=/content/journal/ijsem/10.1099/ijs.0.65471-0&mimeType=html&fmt=ahah

References

  1. de Hoog, G. S. & Smith, M. T.(2004). Ribosomal gene phylogeny and species delimitation in Geotrichum and its teleomorphs. Stud Mycol 50, 489–515. [Google Scholar]
  2. de Hoog, G. S., Smith, M. T. & Gueho, E.(1986). A revision of the genus Geotrichum and its teleomorphs. Stud Mycol 29, 1–131. [Google Scholar]
  3. de Hoog, G. S., Smith, M. T. & Gueho, E.(1998a).Dipodascus de Lagerheim. In The Yeasts, a Taxonomic Study, 4th edn, pp. 181–193. Edited by C. P. Kurtzman & J. W. Fell. Amsterdam: Elsevier.
  4. de Hoog, G. S., Smith, M. T. & Gueho, E.(1998b).Galactomyces Redhead & Malloch. In The Yeasts, a Taxonomic Study, 4th edn, pp. 209–213. Edited by C. P. Kurtzman & J. W. Fell. Amsterdam: Elsevier.
  5. de Hoog, G. S., Smith, M. T. & Gueho, E.(1998c).Geotrichum Link: Fries. In The Yeasts, a Taxonomic Study, 4th edn, pp. 574–579. Edited by C. P. Kurtzman & J. W. Fell. Amsterdam: Elsevier.
  6. Edgcomb, V. P., Kysela, D. T., Teske, A., Gomez, A. V. & Sogin, M. L.(2002). Benthic eukaryotic diversity in the Guaymas Basin hydrothermal vent environment. Proc Natl Acad Sci U S A 99, 7658–7662.[CrossRef] [Google Scholar]
  7. Fell, J. W., Boekhout, T., Fonseca, A., Scorzetti, G. & Statzell-Tallman, A.(2000). Biodiversity and systematics of basidiomycetous yeasts as determined by large-subunit rDNA D1/D2 domain sequence analysis. Int J Syst Evol Microbiol 50, 1351–1371.[CrossRef] [Google Scholar]
  8. Felsenstein, J.(1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368–376.[CrossRef] [Google Scholar]
  9. Felsenstein, J.(1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.[CrossRef] [Google Scholar]
  10. Fujikura, K., Kojima, S., Takaki, K., Maki, Y., Hunt, J. & Okutani, Y.(1999). The deepest chemosynthesis-based community yet discovered from the hadal zone, 7326 m deep, in the Japan Trench. Mar Ecol Prog Ser 190, 17–26.[CrossRef] [Google Scholar]
  11. Gadanho, M. & Sampaio, J. P.(2005). Occurrence and diversity of yeasts in the Mid-Atlantic Ridge hydrothermal fields near the Azores archipelago. Microb Ecol 50, 408–417.[CrossRef] [Google Scholar]
  12. Huelsenbeck, J. P. & Ronquist, F.(2001).mrbayes: Bayesian inference of phylogeny. Bioinformatics 17, 754–755.[CrossRef] [Google Scholar]
  13. Komagata, K. & Nakase, T.(1967). Reitoshokuhin no biseibutsu ni kansuru kenkyu. V. Shihan reitoshokuhin yori bunri shita kobo no seijo (Microbiological studies on frozen foods). Shokuhin Eiseigaku Zasshi 8, 53–57 (in Japanese).[CrossRef] [Google Scholar]
  14. Kurtzman, C. P. & Fell, J. W. (editors)(1998).The Yeasts: a Taxonomic Study, 4th edn. Amsterdam: Elsevier.
  15. Kurtzman, C. P. & Robnett, C. J.(1998). Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie van Leeuwenhoek 73, 331–371.[CrossRef] [Google Scholar]
  16. Kurtzman, C. P. & Robnett, C. J.(2003). Phylogenetic relationships among yeasts of the ‘Saccharomyces complex’ determined from multigene sequence analyses. FEMS Yeast Res 3, 417–432.[CrossRef] [Google Scholar]
  17. López-García, P., Vereshchaka, A. & Moreir, D.(2007). Eukaryotic diversity associated with carbonates and fluid–seawater interface in Lost City hydrothermal field. Environ Microbiol 9, 546–554.[CrossRef] [Google Scholar]
  18. Nagahama, T.(2006). Yeast biodiversity in freshwater, marine and deep-sea environments. In Biodiversity and Ecophysiology of Yeasts (The Yeast Handbook series), pp. 241–262. Edited by C. A. Rosa & G. Péter. Berlin & London: Springer.
  19. Nagahama, T., Hamamoto, M., Nakase, T., Takami, H. & Horikoshi, K.(2001a). Distribution and identification of red yeasts in deep-sea environments around the northwest Pacific Ocean. Antonie van Leeuwenhoek 80, 101–110.[CrossRef] [Google Scholar]
  20. Nagahama, T., Hamamoto, M., Nakase, T. & Horikoshi, K.(2001b).Rhodotorula lamellibrachii sp. nov., a new yeast species from a tubeworm collected at the deep-sea floor in Sagami Bay and its phylogenetic analysis. Antonie van Leeuwenhoek 80, 317–323.[CrossRef] [Google Scholar]
  21. Nakase, T. & Suzuki, M.(1986).Bullera megalospora, a new species of yeast forming large ballistospores isolated from dead leaves of Oryza sativa, Miscanthus sinensis and Sasa sp. in Japan. J Gen Appl Microbiol 32, 225–240.[CrossRef] [Google Scholar]
  22. Nylander, J. A. A.(2004). MrModeltest version 2. Distributed by the author. Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.
  23. Posada, D. & Crandall, K. A.(1998).modeltest: testing the model of DNA substitution. Bioinformatics 14, 817–818.[CrossRef] [Google Scholar]
  24. Ronquist, F. & Huelsenbeck, J. P.(2003).mrbayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572–1574.[CrossRef] [Google Scholar]
  25. Suh, S.-O. & Blackwell, M.(2006). Three new asexual arthroconidial yeasts, Geotrichum carabidarum sp. nov., Geotrichum histeridarum sp. nov., and Geotrichum cucujoidarum sp. nov., isolated from the gut of insects. Mycol Res 110, 220–228.[CrossRef] [Google Scholar]
  26. Swofford, D. L.(1998).paup*: phylogenetic analysis using parsimony (and other methods), version 4. Sunderland, MA: Sinauer Associates.
  27. Tamaoka, J. & Komagata, K.(1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125–128.[CrossRef] [Google Scholar]
  28. Thompson, J. D., Higgins, D. G. & Gibson, T. J.(1994).clustalw: improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673–4680.[CrossRef] [Google Scholar]
  29. Ueda-Nishimura, K. & Mikata, K.(2000). Two distinct 18S rRNA secondary structures in Dipodascus (Hemiascomycetes). Microbiology 146, 1045–1051. [Google Scholar]
  30. White, T. J., Bruns, T., Lee, S. & Taylor, J. W.(1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols, pp. 315–322. Edited by M. Innis, D. Gelfand, J. J. Sninsky & T. J. White. San Diego: Academic Press.
  31. Yarrow, D.(1998). Methods for the isolation, maintenance and identification of yeasts. In The Yeasts, a Taxonomic Study, 4th edn, pp. 77–100. Edited by C. P. Kurtzman & J. W. Fell. Amsterdam: Elsevier.
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.65471-0
Loading
/content/journal/ijsem/10.1099/ijs.0.65471-0
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error