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Volume 58, Issue 8

Transfer of Lee 2000 as gen. nov., comb. nov. and Asano 1989 as gen. nov., comb. nov., and emended description of the genus Asano and Kawamoto 1986 emend. Lee and Hah 2002 Free

Abstract

A polyphasic taxonomic analysis of all species of the genus with validly published names revealed morphological, phenotypic and chemotaxonomic heterogeneity. The type species, , and , , and had similar morphological and chemotaxonomical properties. Phylogenetic studies based on 16S rRNA gene sequences showed that and were heterogeneous and were also heterogeneous with other species of the genus with respect to the menaquinone composition. DNA–DNA hybridization data showed that the type strains of and were significantly different from each other and other recognized species in the genus . Therefore, on the basis of phenotypic, chemotaxonomic and genomic differences, two new genera with the names gen. nov. and gen. nov. are proposed to accommodate two species classified originally as belonging to the genus and gen. nov., comb. nov. and gen. nov., comb. nov. are described. The type species of the genus is (type strain LM 042=JCM 10976=DSM 44566=IMSNU 50729) and the type species of the genus is (type strain 6420-P=JCM 9105=DSM 44101=IMSNU 22005).

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Keyword(s): DAP, diaminopimelic acid , DPG, diphosphatidylglycerol , OH-PE, hydroxy-phosphatidylethanolamine , PE, phosphatidylethanolamine , PI, phosphatidylinositol and PIM, phosphatidylinositol mannoside
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2008-08-01
2024-04-24
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References

  1. Ara, I. & Kudo, T.(2006). Three novel species of the genus Catellatospora, Catellatospora chokoriensis sp. nov., Catellatospora coxensis sp. nov. and Catellatospora bangladeshensis sp. nov. and transfer of Catellatospora citrea subsp. methionotrophica Asano and Kawamoto 1988 to Catellatospora methionotrophica sp. nov., comb. nov. Int J Syst Evol Microbiol 56, 393–400.[CrossRef] [Google Scholar]
  2. Ara, I. & Kudo, T.(2007a).Luedemannella gen. nov., a new genus of the family Micromonosporaceae and description of Luedemannella helvata sp. nov. and Luedemannella flava sp. nov. J Gen Appl Microbiol 53, 39–51.[CrossRef] [Google Scholar]
  3. Ara, I. & Kudo, T.(2007b). Two new species of the genus Micromonospora: Micromonospora chokoriensis sp. nov. and Micromonospora coxensis sp. nov., isolated from sandy soil. J Gen Appl Microbiol 53, 29–37.[CrossRef] [Google Scholar]
  4. Ara, I. & Kudo, T.(2007c).Sphaerisporangium gen. nov., a new genus of the family Streptosporangiaceae with descriptions of three new species as Sphaerisporangium melleum sp. nov., Sphaerisporangium rubeum sp. nov., Sphaerisporangium cinnabarinum sp. nov. and transfer of Streptosporangium viridialbum Nonomura and Ohara 1960 to Sphaerisporangium viridialbum comb. nov. Actinomycetologica 21, 11–21.[CrossRef] [Google Scholar]
  5. Ara, I. & Kudo, T.(2007d).Krasilnikovia gen. nov., a new genus of the family Micromonosporaceae and description of Krasilnikovia cinnamomea sp. nov. Actinomycetologica 21, 1–10.[CrossRef] [Google Scholar]
  6. Ara, I., Kudo, T., Matsumoto, A., Takahashi, Y. & Omura, S.(2007a).Nonomuraea bangladeshensis sp. nov., and Nonomuraea coxensis sp. nov. Int J Syst Evol Microbiol 57, 1504–1509.[CrossRef] [Google Scholar]
  7. Ara, I., Kudo, T., Matsumoto, A., Takahashi, Y. & Omura, S.(2007b).Nonomuraea maheshkhaliensis sp. nov., a novel actinomycete isolated from mangrove rhizosphere mud. J Gen Appl Microbiol 53, 159–166.[CrossRef] [Google Scholar]
  8. Asano, K. & Kawamoto, I.(1986).Catellatospora, a new genus of the Actinomycetales. Int J Syst Bacteriol 36, 512–517.[CrossRef] [Google Scholar]
  9. Asano, K. & Kawamoto, I.(1988).Catellatospora citrea subsp. methionotrophica subsp. nov., a methionine-deficient auxotroph of the Actinomycetales. Int J Syst Bacteriol 38, 326–327.[CrossRef] [Google Scholar]
  10. Asano, K., Masunaga, I. & Kawamoto, I.(1989).Catellatospora matsumotoense sp. nov. and C. tsunoense sp. nov., actinomycetes found in woodland soils. Int J Syst Bacteriol 39, 309–313.[CrossRef] [Google Scholar]
  11. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E.(1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221–230.[CrossRef] [Google Scholar]
  12. Collins, M. D., Faulkner, M. & Keddie, R. M.(1984). Menaquinone composition of some spore forming actinomycetes. Syst Appl Microbiol 5, 20–29.[CrossRef] [Google Scholar]
  13. Couch, J. N.(1950).Actinoplanes a new genus of the Actinomycetales. J Elisha Mitchell Sci Soc 66, 87–92. [Google Scholar]
  14. Ezaki, T., Hashimoto, Y. & Yabuuchi, E.(1989). Fluorometric deoxyribonucleic acid- deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224–229.[CrossRef] [Google Scholar]
  15. Felsenstein, J.(1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.[CrossRef] [Google Scholar]
  16. Goodfellow, M. L., Stanton, J., Simpson, K. E. & Minnikin, D. E.(1990). Numerical and chemical classification of Actinoplanes and some related actinomycetes. J Gen Microbiol 136, 19–36.[CrossRef] [Google Scholar]
  17. Horan, A. C. & Brodsky, B.(1986).Actinoplanes caeruleus sp. nov., a blue-pigmented species of the genus Actinoplanes. Int J Syst Bacteriol 36, 187–191.[CrossRef] [Google Scholar]
  18. Itoh, T., Kudo, T., Parenti, F. & Seino, A.(1989). Amended description of the genus Kineosporia, based on chemotaxonomic and morphological studies. Int J Syst Bacteriol 39, 168–173.[CrossRef] [Google Scholar]
  19. Jacobson, E., Grauville, W. C. & Fogs, C. E.(1958).Color Harmony Manual, 4th edn. Chicago: Container Corporation of America.
  20. Kane, W. D.(1966). A new genus of Actinoplanaceae, Pilimelia, with a description of two species, Pilimelia terevasa and Pilimelia anulata. J Elisha Mitchell Sci Soc 82, 220–230. [Google Scholar]
  21. Koch, C., Kroppenstedt, R. M., Rainey, F. A. & Stackebrandt, E.(1996). 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium, and Pilimelia and emendation of the family Micromonosporaceae. Int J Syst Bacteriol 46, 765–768.[CrossRef] [Google Scholar]
  22. Kroppenstedt, R. M.(1985). Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics, pp. 173–199. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
  23. Kudo, T., Matsushima, K., Itoh, T., Sasaki, J. & Suzuki, K.(1998). Description of four new species of the genus Kineosporia: Kineosporia succinea sp. nov., Kineosporia rhizophila sp. nov., Kineosporia mikuniensis sp. nov. and Kineosporia rhamnosa sp. nov., isolated from plant samples, and amended description of the genus Kineosporia. Int J Syst Bacteriol 48, 1245–1255.[CrossRef] [Google Scholar]
  24. Kudo, T., Nakajima, Y. & Suzuki, K.(1999).Catenuloplanes crispus (Petrolini et al. 1993) comb. nov.: incorporation of the genus Planopolyspora Petrolini 1993 into the genus Catenuloplanes Yokota et al. 1993 with an amended description of the genus Catenuloplanes. Int J Syst Bacteriol 49, 1853–1860.[CrossRef] [Google Scholar]
  25. Lechevalier, M. P., Stern, A. E. & Lechevalier, H. A.(1981). Phospholipids in the taxonomy of actinomycetes. Zentbl Bakteriol Hyg Abt 1 (Suppl 11), 111–116. [Google Scholar]
  26. Lee, S. D. & Hah, Y. C.(2002). Proposal to transfer Catellatospora ferruginea and ‘Catellatospora ishikariense’ to Asanoa gen. nov. as Asanoa ferruginea comb. nov. and Asanoa ishikariensis sp. nov., with emended description of the genus Catellatospora. Int J Syst Evol Microbiol 52, 967–972.[CrossRef] [Google Scholar]
  27. Lee, S. D., Goodfellow, M. & Hah, Y. C.(1999). A phylogenetic analysis of the genus Catellatospora based on 16S ribosomal DNA sequences, including transfer of Catellatospora matsumotoense to the genus Micromonospora as Micromonospora matsumotoense comb. nov. FEMS Microbiol Lett 178, 349–354.[CrossRef] [Google Scholar]
  28. Lee, S. D., Kang, S.-O. & Hah, Y. C.(2000).Catellatospora koreensis sp. nov., a novel actinomycete isolated from a gold-mine cave. Int J Syst Evol Microbiol 50, 1103–1111.[CrossRef] [Google Scholar]
  29. Maldonado, L. A., Fenical, W., Jensen, P. R., Kauffman, C. A., Mincer, T. J., Ward, A. C., Bull, A. T. & Goodfellow, M.(2005).Salinispora arenicola gen. nov., sp. nov. and Salinispora tropica sp. nov., obligate marine actinomycetes belonging to the family Micromonosporaceae. Int J Syst Evol Microbiol 55, 1759–1766.[CrossRef] [Google Scholar]
  30. Matsumoto, A., Takahashi, Y., Shinose, M., Seino, A., Iwai, Y. & Omura, S.(2003).Longispora albida gen. nov., a novel genus of the family Micromonosporaceae. Int J Syst Evol Microbiol 53, 1553–1559.[CrossRef] [Google Scholar]
  31. Mikami, H. & Ishida, Y.(1983). Post-column fluorometric detection of reducing sugar in high-performance liquid chromatography using arginine. Bunseki Kagaku 32, E207–E210.[CrossRef] [Google Scholar]
  32. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H.(1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233–241.[CrossRef] [Google Scholar]
  33. Nakajima, Y., Kitpreechavanich, V., Suzuki, K. & Kudo, T.(1999).Microbispora corallina sp. nov., a new species of the genus Microbispora isolated from Thai soil. Int J Syst Bacteriol 49, 1761–1767.[CrossRef] [Google Scholar]
  34. Ørskov, J.(1923).Investigations into the Morphology of the Ray Fungi. Copenhagen: Levin and Munksgaard.
  35. Raeder, U. & Broda, P.(1985). Rapid preparation of DNA from filamentous fungi. Lett Appl Microbiol 1, 17–20.[CrossRef] [Google Scholar]
  36. Rheims, H., Schumann, P., Rohde, M. & Stackebrandt, E.(1998).Verrucosispora gifhornensis gen. nov., sp. nov., a new member of the actinobacterial family Micromonosporaceae. Int J Syst Bacteriol 48, 1119–1127.[CrossRef] [Google Scholar]
  37. Saito, H. & Miura, K.(1963). Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim Biophys Acta 72, 619–629.[CrossRef] [Google Scholar]
  38. Saitou, N. & Nei, M.(1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425. [Google Scholar]
  39. Sasser, M.(1990).Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
  40. Sharples, G. P. & Williams, S. T.(1974). Fine structure of the globose bodies of Dactylosporangium thailandense (Actinomycetales). J Gen Microbiol 84, 219–222.[CrossRef] [Google Scholar]
  41. Shirling, E. B. & Gottlieb, D.(1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313–340.[CrossRef] [Google Scholar]
  42. Stackebrandt, E. & Kroppenstedt, R. M.(1987). Union of the genera Actinoplanes Couch, Ampullariella Couch, and Amorphosporangium Couch in a redefined genus Actinoplanes. Syst Appl Microbiol 9, 110–114.[CrossRef] [Google Scholar]
  43. Staneck, J. L. & Roberts, G. D.(1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226–231. [Google Scholar]
  44. Stevenson, I. L.(1967). Utilization of aromatic hydrocarbons by Arthrobacter spp. Can J Microbiol 13, 205–211.[CrossRef] [Google Scholar]
  45. Swofford, D. L.(2001).paup*: Phylogenetic analysis using parsimony (*and other methods), version 4. Sunderland, MA: Sinauer Associates.
  46. Tamaoka, J.(1994). Determination of DNA base composition. In Chemical Methods in Prokaryotic Systematics, pp. 463–470. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: John Wiley & Sons.
  47. Tamaoka, J. & Komagata, K.(1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125–128.[CrossRef] [Google Scholar]
  48. Tamaoka, J., Katayama-Fujimura, Y. & Kuraishi, H.(1983). Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Bacteriol 54, 31–36.[CrossRef] [Google Scholar]
  49. Tamura, T. & Hatano, K.(2001). Phylogenetic analysis of the genus Actinoplanes and transfer of Actinoplanes minutisporangius Ruan et al. 1986 and ‘Actinoplanes aurantiacus’ to Cryptosporangium minutisporangius comb. nov. and Cryptosporangium aurantiacum sp. nov. Int J Syst Evol Microbiol 51, 2119–2125.[CrossRef] [Google Scholar]
  50. Tamura, T., Nakagaito, Y., Nishii, T., Hasegawa, T., Stackebrandt, E. & Yokota, A.(1994). A new genus of the order Actinomycetales, Couchioplanes gen. nov., with descriptions of Couchioplanes caeruleus (Horan and Brodsky 1986) comb. nov. and Couchioplanes caeruleus subsp. azureus subsp. nov. Int J Syst Bacteriol 44, 193–203.[CrossRef] [Google Scholar]
  51. Tamura, T., Hayakawa, M. & Hatano, K.(1997). A new genus of the order Actinomycetales, Spirilliplanes gen. nov., with description of Spirilliplanes yamanashiensis sp. nov. Int J Syst Bacteriol 47, 97–102.[CrossRef] [Google Scholar]
  52. Tamura, T., Hayakawa, M. & Hatano, K.(2001). A new genus of the order Actinomycetales, Virgosporangium gen. nov., with descriptions of Virgosporangium ochraceum sp. nov. and Virgosporangium aurantiacum sp. nov. Int J Syst Evol Microbiol 51, 1809–1816.[CrossRef] [Google Scholar]
  53. Tamura, T., Hatano, K. & Suzuki, K.(2006). A new genus of the family Micromonosporaceae, Polymorphospora gen. nov., with description of Polymorphospora rubra sp. nov. Int J Syst Evol Microbiol 56, 1959–1964.[CrossRef] [Google Scholar]
  54. Thawai, C., Tanasupawat, S., Itoh, T. & Kudo, T.(2006).Actinocatenispora thailandica gen. nov., sp. nov., a new member of the family Micromonosporaceae. Int J Syst Evol Microbiol 56, 1789–1794.[CrossRef] [Google Scholar]
  55. Thiemann, J. E., Pagani, H. & Beretta, G.(1967). A new genus of the Actinoplanaceae: Dactylosporangium, gen. nov. Arch Mikrobiol 58, 42–52.[CrossRef] [Google Scholar]
  56. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G.(1997). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876–4882.[CrossRef] [Google Scholar]
  57. Tomiyasu, I.(1982). Mycolic acid composition and thermally adaptative changes in Nocardia asteroides. J Bacteriol 151, 828–837. [Google Scholar]
  58. Uchida, K. & Aida, K.(1984). An improved method for the glycolate test for simple identification of acyl type of bacterial cell walls. J Gen Appl Microbiol 30, 131–134.[CrossRef] [Google Scholar]
  59. Vobis, G.(1989). Actinoplanetes. In Bergey's Manual of Systematic Bacteriology, vol. 4, pp. 2418–2450. Edited by S. T. Williams, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
  60. Waksman, S. A.(1950).The Actinomycetes: Their Nature, Occurrence, Activities and Importance. Waltham, MA: Chronica Botanica.
  61. Waksman, S. A.(1961). Classification, identification and description of genera and species. In The Actinomycetes, vol. 2. Baltimore: Williams & Wilkins.
  62. Yokota, A., Tamura, T., Hasegawa, T. & Huang, L. H.(1993).Catenuloplanes japonicus gen. nov., sp. nov., nom. rev., a new genus of the order Actinomycetales. Int J Syst Bacteriol 43, 805–812.[CrossRef] [Google Scholar]
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Transfer of Catellatospora koreensis Lee et al. 2000 as Catelliglobosispora koreensis gen. nov., comb. nov. and Catellatospora tsunoense Asano et al. 1989 as Hamadaea tsunoensis gen. nov., comb. nov., and emended description of the genus Catellatospora Asano and Kawamoto 1986 emend. Lee and Hah 2002
Int J Syst Evol Microbiol 58, 1950 (2008); https://doi.org/10.1099/ijs.0.65548-0
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16S rRNA gene sequence similarities of gen. nov., comb. nov., gen. nov., comb. nov. and recognized species of the genus [PDF](12 KB)

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Chemotaxonomic characteristics of gen. nov., comb. nov., gen. nov., comb. nov. and recognized species of the genus [PDF](15 KB)

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