1887

Abstract

A Gram-stain-positive, rod-shaped, facultatively anaerobic, endospore-forming bacterium (designated strain SC03) was isolated from the aerobic treatment sludge of a coking plant (Shaoguan City, China). The optimal pH and temperature for growth were pH 7.0 and 35 °C. On the basis of 16S rRNA gene sequence analysis, strain SC03 was related to the genus and the similarity between strain SC03 and the most closely related type strain, LMG 18474, was 94.4 %. The genomic G+C content of the DNA of strain SC03 was 41.2 mol%. Chemotaxonomic data supported the affiliation of strain SC03 to the genus . These properties include MK-7 as the predominant menaquinone; iso-C and iso-C as major fatty acids; A4α (-Lys–-Asp) as the cell-wall peptidoglycan type; and diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine plus three unknown phospholipids as polar lipids. The phenotypic, phylogenetic and chemotaxonomic characters enable the differentiation of strain SC03 from recognized species. Thus, strain SC03 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is SC03 ( = NRRL B-59352 = CCTCC M 208210).

Funding
This study was supported by the:
  • National Natural Science Foundation of China (Award 20977035)
  • Research Fund of SIT of Guangzhou (Award 51178190)
  • Research Fund of The Key Lab of Pollution Control and Ecosystem Restoration in Industry Clusters, Ministry of Education, China
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2015-11-01
2024-04-18
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References

  1. Abraham E.P., Chain E., Fletcher C.M., Florey H.W., Gardner A.D., Heatley N.G., Jennings M.A. ( 1941;). Further observations on penicillin. Lancet 2 177189. [CrossRef]
    [Google Scholar]
  2. Ahmed I., Yokota A., Yamazoe A., Fujiwara T. ( 2007;). Proposal of Lysinibacillus boronitolerans gen. nov. sp. nov., and transfer of Bacillus fusiformis to Lysinibacillus fusiformis comb. nov. and Bacillus sphaericus to Lysinibacillus sphaericus comb. nov. Int J Syst Evol Microbiol 57 11171125 [View Article] [PubMed].
    [Google Scholar]
  3. Ash C., Farrow J.A.E., Wallbanks S., Collins M.D. ( 1991;). Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small-subunit-ribosomal RNA sequences. Lett Appl Microbiol 13 202206 [View Article].
    [Google Scholar]
  4. Azmatunnisa M., Rahul K., Lakshmi K.V.N.S., Sasikala Ch., Ramana Ch.V. ( 2015;). Lysinibacillus acetophenoni sp. nov., a solvent-tolerant bacterium isolated from acetophenone. Int J Syst Evol Microbiol 65 17411748 [View Article] [PubMed].
    [Google Scholar]
  5. Chang Y.H., Han J.I., Chun J., Lee K.C., Rhee M.S., Kim Y.B., Bae K.S. ( 2002;). Comamonas koreensis sp. nov., a non-motile species from wetland in Woopo, Korea. Int J Syst Evol Microbiol 52 377381 [View Article] [PubMed].
    [Google Scholar]
  6. Cheng M., Zhang H., Zhang J., Hu G., Zhang J., He J., Huang X. ( 2015;). Lysinibacillus fluoroglycofenilyticus sp. nov., a bacterium isolated from fluoroglycofen contaminated soil. Antonie van Leeuwenhoek 107 157164 [View Article] [PubMed].
    [Google Scholar]
  7. Collins M.D. ( 1981;). Distribution of menaquinones within members of the genus Staphylococcus . FEMS Microbiol Lett 12 8385 [View Article].
    [Google Scholar]
  8. Collins M.D., Jones D. ( 1980;). Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2, 4-diaminobutyric acid. J Appl Microbiol 48 459470.
    [Google Scholar]
  9. Coorevits A., Dinsdale A.E., Heyrman J., Schumann P., Van Landschoot A., Logan N.A., De Vos P. ( 2012;). Lysinibacillus macroides sp. nov., nom. rev. Int J Syst Evol Microbiol 62 11211127 [View Article] [PubMed].
    [Google Scholar]
  10. Duan Y.Q., He S.T., Li Q.Q., Wang M.F., Wang W.Y., Zhe W., Cao Y.H., Mo M.H., Zhai Y.L., Li W.J. ( 2013;). Lysinibacillus tabacifolii sp. nov., a novel endophytic bacterium isolated from Nicotiana tabacum leaves. J Microbiol 51 289294 [View Article] [PubMed].
    [Google Scholar]
  11. Felsenstein J. ( 1985;). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 783791 [View Article].
    [Google Scholar]
  12. Fitch W.M. ( 1971;). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20 406416 [View Article].
    [Google Scholar]
  13. Gregersen T. ( 1978;). Rapid method for distinction of gram-negative from gram-positive bacteria. Eur J Appl Microbiol Biotechnol 5 123127 [View Article].
    [Google Scholar]
  14. Groth I., Schumann P., Weiss N., Martin K., Rainey F.A. ( 1996;). Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46 234239 [View Article] [PubMed].
    [Google Scholar]
  15. Jung M.Y., Kim J., Paek W.K., Styrak I., Park I., Sin Y., Paek J., Park K.A., Kim H., other authors. ( 2012;). Description of Lysinibacillus sinduriensis sp. nov., and transfer of Bacillus massiliensis and Bacillus odysseyi to Lysinibacillus as Lysinibacillus massiliensis comb. nov. and Lysinibacillus odysseyi comb. nov. with emended description of the genus. Int J Syst Evol Microbiol 62 23472356 [View Article] [PubMed].
    [Google Scholar]
  16. Kämpfer P., Martin K., Glaeser S.P. ( 2013;). Lysinibacillus contaminans sp. nov., isolated from surface water. Int J Syst Evol Microbiol 63 31483153 [View Article] [PubMed].
    [Google Scholar]
  17. Kim O.S., Cho Y.J., Lee K., Yoon S.H., Kim M., Na H., Park S.C., Jeon Y.S., Lee J.H., other authors. ( 2012;). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62 716721 [View Article] [PubMed].
    [Google Scholar]
  18. Kong D., Wang Y., Zhao B., Li Y., Song J., Zhai Y., Zhang C., Wang H., Chen X., other authors. ( 2014;). Lysinibacillus halotolerans sp. nov., isolated from saline-alkaline soil. Int J Syst Evol Microbiol 64 25932598 [View Article] [PubMed].
    [Google Scholar]
  19. Kumar S., Tamura K., Nei M. ( 2004;). mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5 150163 [View Article] [PubMed].
    [Google Scholar]
  20. Lee C.S., Jung Y.T., Park S., Oh T.K., Yoon J.H. ( 2010;). Lysinibacillus xylanilyticus sp. nov., a xylan-degrading bacterium isolated from forest humus. Int J Syst Evol Microbiol 60 281286 [View Article] [PubMed].
    [Google Scholar]
  21. Liu H., Song Y., Chen F., Zheng S., Wang G. ( 2013;). Lysinibacillus manganicus sp. nov., isolated from manganese mining soil. Int J Syst Evol Microbiol 63 35683573 [View Article] [PubMed].
    [Google Scholar]
  22. Logan N.A., Berge O., Bishop A.H., Busse H.J., De Vos P., Fritze D., Heyndrickx M., Kämpfer P., Rabinovitch L., other authors. ( 2009;). Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria. Int J Syst Evol Microbiol 59 21142121 [View Article] [PubMed].
    [Google Scholar]
  23. Mesbah M., Premachandran U., Whitman W.B. ( 1989;). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Evol Microbiol 39 159167.
    [Google Scholar]
  24. Minnikin D.E., Collins M.D., Goodfellow M. ( 1979;). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Microbiol 47 8795.
    [Google Scholar]
  25. Miwa H., Ahmed I., Yokota A., Fujiwara T. ( 2009;). Lysinibacillus parviboronicapiens sp. nov., a low-boron-containing bacterium isolated from soil. Int J Syst Evol Microbiol 59 14271432 [View Article] [PubMed].
    [Google Scholar]
  26. Priest F.G., Goodfellow M., Todd C. ( 1988;). A numerical classification of the genus Bacillus . J Gen Microbiol 134 18471882 [PubMed].
    [Google Scholar]
  27. Rzhetsky A., Nei M. ( 1992;). A simple method for estimating and testing minimum-evolution trees. Mol Biol Evol 9 945967.
    [Google Scholar]
  28. Saitou N., Nei M. ( 1987;). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4 406425 [PubMed].
    [Google Scholar]
  29. Schleifer K.H., Kandler O. ( 1972;). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36 407477 [PubMed].
    [Google Scholar]
  30. Schleifer K.H. ( 1985;). Analysis of the chemical composition and primary structure of murein. Methods Microbiol 18 123156. [CrossRef]
    [Google Scholar]
  31. Seiler H., Scherer S., Wenning M. ( 2013;). Lysinibacillus meyeri sp. nov., isolated from a medical practice. Int J Syst Evol Microbiol 63 15121518 [View Article] [PubMed].
    [Google Scholar]
  32. Smibert R., Krieg N. ( 1994;). Phenotypic characterization. . In Methods for General and Molecular Bacteriology, pp. 607654. Edited by Gerhardt P., Murray R., Wood W., Krieg N. Washington, DC: American Society for Microbiology;.
    [Google Scholar]
  33. Tang S.K., Wang Y., Chen Y., Lou K., Cao L.L., Xu L.H., Li W.J. ( 2009;). Zhihengliuella alba sp. nov., and emended description of the genus Zhihengliuella . Int J Syst Evol Microbiol 59 20252031 [View Article] [PubMed].
    [Google Scholar]
  34. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. ( 1997;). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25 48764882 [View Article] [PubMed].
    [Google Scholar]
  35. Yang L.L., Huang Y., Liu J., Ma L., Mo M.H., Li W.J., Yang F.X. ( 2012;). Lysinibacillus mangiferahumi sp. nov., a new bacterium producing nematicidal volatiles. Antonie van Leeuwenhoek 102 5359 [View Article] [PubMed].
    [Google Scholar]
  36. Yao H., Ren Y., Wei C., Yue S. ( 2011;). Biodegradation characterisation and kinetics of m-cresol by Lysinibacillus cresolivorans . Water SA 37 1520 [View Article].
    [Google Scholar]
  37. Zhao G., Chen S.Y., Ren Y., Wei C. ( 2014;). Interaction and biodegradation evaluate of m-cresol and quinoline co-exist system. Int Biodeter Biodegr 86 252257 [View Article].
    [Google Scholar]
  38. Zhou J., Bruns M.A., Tiedje J.M. ( 1996;). DNA recovery from soils of diverse composition. Appl Environ Microb 62 316322.
    [Google Scholar]
  39. Zhu C., Sun G., Chen X., Guo J., Xu M. ( 2014;). Lysinibacillus varians sp. nov., an endospore-forming bacterium with a filament-to-rod cell cycle. Int J Syst Evol Microbiol 64 36443649 [View Article] [PubMed].
    [Google Scholar]
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