Sulfurirhabdus autotrophica gen. nov., sp. nov., isolated from a freshwater lake

References

1. Boyd E. S., Hamilton T. L., Havig J. R., Skidmore M. L., Shock E. L. 2014; Chemolithotrophic primary production in a subglacial ecosystem. Appl Environ Microbiol 80:6146–6153 [View Article][PubMed]
   [Google Scholar]
2. Cheng W., Zhang J., Wang Z., Wang M., Xie S. 2014; Bacterial communities in sediments of a drinking water reservoir. Ann Microbiol 64:875–878 [View Article]
   [Google Scholar]
3. Drobner E., Huber H., Rachel R., Stetter K. O. 1992; Thiobacillus plumbophilus spec. nov., a novel galena and hydrogen oxidizer. Arch Microbiol 157:213–217 [View Article][PubMed]
   [Google Scholar]
4. Field E. K., D'Imperio S., Miller A. R., VanEngelen M. R., Gerlach R., Lee B. D., Apel W. A., Peyton B. M. 2010; Application of molecular techniques to elucidate the influence of cellulosic waste on the bacterial community structure at a simulated low-level-radioactive-waste site. Appl Environ Microbiol 76:3106–3115 [View Article][PubMed]
   [Google Scholar]
5. Herrmann M., Rusznyák A., Akob D. M., Schulze I., Opitz S., Totsche K. U., Küsel K. 2015; Large fractions of CO₂-fixing microorganisms in pristine limestone aquifers appear to be involved in the oxidation of reduced sulfur and nitrogen compounds. Appl Environ Microbiol 81:2384–2394 [View Article][PubMed]
   [Google Scholar]
6. Hong P. Y., Yannarell A. C., Dai Q., Ekizoglu M., Mackie R. I. 2013; Monitoring the perturbation of soil and groundwater microbial communities due to pig production activities. Appl Environ Microbiol 79:2620–2629 [View Article][PubMed]
   [Google Scholar]
7. Katayama-Fujimura Y., Komatsu Y., Kuraishi H., Kaneko T. 1984; Estimation of DNA base composition by high performance liquid chromatography of its nuclease PI hydrolysate. Agric Biol Chem 48:3169–3172 [View Article]
   [Google Scholar]
8. Kojima H., Fukui M. 2010; Sulfuricella denitrificans gen. nov., sp. nov., a sulfur-oxidizing autotroph isolated from a freshwater lake. Int J Syst Evol Microbiol 60:2862–2866 [View Article][PubMed]
   [Google Scholar]
9. Kubo K., Kojima H., Fukui M. 2014; Vertical distribution of major sulfate-reducing bacteria in a shallow eutrophic meromictic lake. Syst Appl Microbiol 37:510–519 [View Article][PubMed]
   [Google Scholar]
10. Lane D. J. 1991; 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics pp 115–175Edited by Stackebrandt E., Goodfellow M. Chichester: Wiley;
    [Google Scholar]
11. Li D., Li Z., Yu J., Cao N., Liu R., Yang M. 2010; Characterization of bacterial community structure in a drinking water distribution system during an occurrence of red water. Appl Environ Microbiol 76:7171–7180 [View Article][PubMed]
    [Google Scholar]
12. Li J., Sun W., Wang S., Sun Z., Lin S., Peng X. 2014; Bacteria diversity, distribution and insight into their role in S and Fe biogeochemical cycling during black shale weathering. Environ Microbiol 16:3533–3547 [View Article][PubMed]
    [Google Scholar]
13. Liu Y., Zhang J., Zhao L., Zhang X., Xie S. 2014; Spatial distribution of bacterial communities in high-altitude freshwater wetland sediment. Limnology 15:249–256 [View Article]
    [Google Scholar]
14. Luo J. F., Lin W. T., Guo Y. 2011; Functional genes based analysis of sulfur-oxidizing bacteria community in sulfide removing bioreactor. Appl Microbiol Biotechnol 90:769–778 [View Article][PubMed]
    [Google Scholar]
15. Meyer B., Kuever J. 2007; Molecular analysis of the diversity of sulfate-reducing and sulfur-oxidizing prokaryotes in the environment, using aprA as functional marker gene. Appl Environ Microbiol 73:7664–7679 [View Article][PubMed]
    [Google Scholar]
16. Nelson D. M., Ohene-Adjei S., Hu F. S., Cann I. K. O., Mackie R. I. 2007; Bacterial diversity and distribution in the holocene sediments of a northern temperate lake. Microb Ecol 54:252–263 [View Article][PubMed]
    [Google Scholar]
17. Nemoto F., Kojima H., Fukui M. 2011; Diversity of freshwater Thioploca species and their specific association with filamentous bacteria of the phylum Chloroflexi . Microb Ecol 62:753–764 [View Article][PubMed]
    [Google Scholar]
18. Song H., Li Z., Du B., Wang G., Ding Y. 2012; Bacterial communities in sediments of the shallow Lake Dongping in China. J Appl Microbiol 112:79–89 [View Article][PubMed]
    [Google Scholar]
19. Sun H., Shi B., Bai Y., Wang D. 2014a; Bacterial community of biofilms developed under different water supply conditions in a distribution system. Sci Total Environ 472:99–107 [View Article][PubMed]
    [Google Scholar]
20. Sun H., Shi B., Lytle D. A., Bai Y., Wang D. 2014b; Formation and release behavior of iron corrosion products under the influence of bacterial communities in a simulated water distribution system. Environ Sci Process Impacts 16:576–585 [View Article][PubMed]
    [Google Scholar]
21. Wang S., Liang P., Wu Z., Su F., Yuan L., Sun Y., Wu Q., Huang X. 2015; Mixed sulfur-iron particles packed reactor for simultaneous advanced removal of nitrogen and phosphorus from secondary effluent. Environ Sci Pollut Res Int 22:415–424 [View Article][PubMed]
    [Google Scholar]
22. Watanabe T., Kojima H., Fukui M. 2012; Draft genome sequence of a psychrotolerant sulfur-oxidizing bacterium, Sulfuricella denitrificans skB26, and proteomic insights into cold adaptation. Appl Environ Microbiol 78:6545–6549 [View Article][PubMed]
    [Google Scholar]
23. Watanabe T., Kojima H., Takano Y., Fukui M. 2013; Diversity of sulfur-cycle prokaryotes in freshwater lake sediments investigated using aprA as the functional marker gene. Syst Appl Microbiol 36:436–443 [View Article][PubMed]
    [Google Scholar]
24. Watanabe T., Kojima H., Fukui M. 2014; Complete genomes of freshwater sulfur oxidizers Sulfuricella denitrificans skB26 and Sulfuritalea hydrogenivorans sk43H: genetic insights into the sulfur oxidation pathway of betaproteobacteria. Syst Appl Microbiol 37:387–395 [View Article][PubMed]
    [Google Scholar]
25. Watanabe T., Kojima H., Fukui M. 2015a; Sulfuriferula multivorans gen. nov., sp. nov., isolated from a freshwater lake, reclassification of ‘Thiobacillus plumbophilus’ as Sulfuriferula plumbophilus sp. nov., and description of Sulfuricellaceae fam. nov. and Sulfuricellales ord. nov. Int J Syst Evol Microbiol 65:1504–1508 [View Article][PubMed]
    [Google Scholar]
26. Watanabe T., Kojima H., Fukui M. 2015b; Draft genome sequence of a sulfur-oxidizing autotroph. Sulfuricella sp. strain T08, isolated from a freshwater lake. Genome Announc 3:e00498–e00415 [View Article][PubMed]
    [Google Scholar]
27. Widdel F., Bak F. 1992; Gram-negative mesotrophic sulfate- reducing bacteria. In The Prokaryotes, 4 2nd edn.. pp 3352–3378 [View Article]Edited by Balows A., Trüper H. G., Dworkin M., Harder W., Schleifer K. H. New York: Springer-Verlag;
    [Google Scholar]
28. Zhong F., Wu J., Dai Y., Yang L., Zhang Z., Cheng S., Zhang Q. 2015; Bacterial community analysis by PCR-DGGE and 454-pyrosequencing of horizontal subsurface flow constructed wetlands with front aeration. Appl Microbiol Biotechnol 99:1499–1512 [View Article][PubMed]
    [Google Scholar]