1887

Abstract

A total of 13 isolates from healthy freshwater turtles were characterized by genotypic and phenotypic tests. Phylogenetic analysis of partial 16S rRNA and gene sequences showed that the isolates investigated formed a monophyletic group. The closest related species based on 16S rRNA gene sequencing was CCUG 55632 with 94.4 % similarity and the closest related species based on gene sequence comparison was [] CCUG 19802 with 91.5 % similarity. All the investigated isolates exhibited phenotypic characteristics of the family . However, they could be separated from existing genera of the by the following test results: indole, ornithine decarboxylase and Voges–Proskauer positive; and methyl red, urease and PNPG (α-glucosidase) negative. No X- or V-factor requirement was observed. A zone of β-haemolysis surrounded the colonies after 24 h of incubation on bovine blood agar at 37 °C. Acid was produced from -arabinose, dulcitol, -mannitol, sucrose and trehalose. Representative strain ELNT2x had a fatty acid profile that was characteristic for members of the . ELNT2x expressed only one respiratory quinone, ubiquinone-8 (100 %). The DNA G+C content of strain ELNT2x was 42.8 mol%. On the basis of both phylogenetic and phenotypic evidence, it is proposed that the strains should be classified as representatives of a novel species of a new genus, gen. nov., sp. nov. The type strain of is ELNT2x ( = CCUG 65146 = DSM 28140), which was isolated from the oral cavity of a captive eastern long-necked turtle () in Denmark in 2012.

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.000759
2016-02-01
2024-04-20
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/66/2/567.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.000759&mimeType=html&fmt=ahah

References

  1. Altschul S. F., Madden T. L., Schäffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J. 1997; Gapped blast psi-blast: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402 [View Article][PubMed]
    [Google Scholar]
  2. Angen O., Mutters R., Caugant D. A., Olsen J. E., Bisgaard M. 1999; Taxonomic relationships of the [Pasteurella] haemolytica complex as evaluated by DNA-DNA hybridizations and 16S rRNA sequencing with proposal of Mannheimia haemolytica gen. nov., comb. nov., Mannheimia granulomatis comb. nov., Mannheimia glucosida sp. nov., Mannheimia ruminalis sp. nov. and Mannheimia varigena sp. nov. Int J Syst Bacteriol 49:67–86 [View Article][PubMed]
    [Google Scholar]
  3. Angen Ø., Ahrens P., Kuhnert P., Christensen H., Mutters R. 2003; Proposal of Histophilus somni gen. nov., sp. nov. for the three species incertae sedis ‘Haemophilus somnus’, ‘Haemophilus agni’ and ‘Histophilus ovis’. Int J Syst Evol Microbiol 53:1449–1456 [View Article][PubMed]
    [Google Scholar]
  4. Benson D. A., Karsch-Mizrachi I., Lipman D. J., Ostell J., Wheeler D. L. 2007; GenBank. Nucleic Acids Res 35:D21–D25 [View Article][PubMed]
    [Google Scholar]
  5. Bisgaard M. 1982; Isolation and characterization of some previously unreported taxa from poultry with phenotypical characters related to Actinobacillus and Pasteurella species. Acta Pathol Microbiol Immunol Scand [B] 90:59–67[PubMed]
    [Google Scholar]
  6. Bisgaard M., Houghton S. B., Mutters R., Stenzel A. 1991; Reclassification of German, British and Dutch isolates of so-called Pasteurella multocida obtained from pneumonic calf lungs. Vet Microbiol 26:115–124 [View Article][PubMed]
    [Google Scholar]
  7. Bisgaard M., Korczak B. M., Busse H. J., Kuhnert P., Bojesen A. M., Christensen H. 2009; Classification of the taxon 2 and taxon 3 complex of Bisgaard within Gallibacterium and description of Gallibacterium melopsittaci sp. nov., Gallibacterium trehalosifermentans sp. nov. and Gallibacterium salpingitidis sp. nov. Int J Syst Evol Microbiol 59:735–744 [View Article][PubMed]
    [Google Scholar]
  8. Blackall P. J., Christensen H., Beckenham T., Blackall L. L., Bisgaard M. 2005; Reclassification of Pasteurella gallinarum, [Haemophilus] paragallinarum, Pasteurella avium and Pasteurella volantium as Avibacterium gallinarum gen. nov., comb. nov., Avibacterium paragallinarum comb. nov., Avibacterium avium comb. nov. and Avibacterium volantium comb. nov. Int J Syst Evol Microbiol 55:353–362 [View Article][PubMed]
    [Google Scholar]
  9. Blackall P. J., Bojesen A. M., Christensen H., Bisgaard M. 2007; Reclassification of [Pasteurella] trehalosi as Bibersteinia trehalosi gen. nov., comb. nov. Int J Syst Evol Microbiol 57:666–674 [View Article][PubMed]
    [Google Scholar]
  10. Christensen H., Bisgaard M. 2004; Revised definition of Actinobacillus sensu stricto isolated from animals: a review with special emphasis on diagnosis. Vet Microbiol 99:13–30 [View Article][PubMed]
    [Google Scholar]
  11. Christensen H., Bisgaard M. 2006; The genus Pasteurella . In The Prokaryotes: An Evolving Electronic Resource for the Microbiological Community. Ver. 3.13Edited by Dworkin M., Lyons C. New York: Springer; [View Article]
    [Google Scholar]
  12. Christensen H., Bisgaard M. 2008; Taxonomy and biodiversity of members of Pasteurellaceae . In Pasteurellaceae: Biology, Genomics and Molecular Aspect pp 1–26Edited by Kuhnert P., Christensen H. Norwich: Caister Academic Press;
    [Google Scholar]
  13. Christensen H., Bisgaard M., Angen O., Olsen J. E. 2002; Final classification of Bisgaard taxon 9 as Actinobacillus arthritidis sp. nov. and recognition of a novel genomospecies for equine strains of Actinobacillus lignieresii . Int J Syst Evol Microbiol 52:1239–1246[PubMed]
    [Google Scholar]
  14. Christensen H., Bisgaard M., Aalbaek B., Olsen J. E. 2004; Reclassification of Bisgaard taxon 33, with proposal of Volucribacter psittacicida gen. nov., sp. nov. and Volucribacter amazonae sp. nov. as new members of the Pasteurellaceae . Int J Syst Evol Microbiol 54:813–818 [View Article][PubMed]
    [Google Scholar]
  15. Christensen H., Kuhnert P., Busse H.-J., Frederiksen W.-C., Bisgaard M. 2007; Proposed minimal standards for the description of genera, species and subspecies of the Pasteurellaceae . Int J Syst Evol Microbiol 57:166–178 [View Article][PubMed]
    [Google Scholar]
  16. Christensen H., Korczak B. M., Bojesen A. M., Kuhnert P., Frederiksen W. C., Bisgaard M. 2011; Classification of organisms previously reported as the SP- or Stewart-Letscher group with Necropsobacter gen. nov., and description of a new species Necropsobacter rosorum, sp. nov, for organisms of the SP-group. Int J Syst Evol Microbiol 61:1829–1836 [View Article][PubMed]
    [Google Scholar]
  17. Christensen H., Kuhnert P., Norskov-Lauritsen N., Planet P. J., Bisgaard M. 2014a; The family Pasteurellaceae . In The Prokaryotes: a Handbook on the Biology of Bacteria pp 535–564Edited by Dworkin M., Falkow S., Rosenberg E., Schleifer K. H., Stackebrandt E., 4th edn. New York: Springer;
    [Google Scholar]
  18. Christensen H., Nicklas W., Bisgaard M. 2014b; Investigation of taxa of the family Pasteurellaceae isolated from Syrian and European hamsters and proposal of Mesocricetibacter intestinalis gen. nov., sp. nov. and Cricetibacter osteomyelitidis gen. nov., sp. nov. Int J Syst Evol Microbiol 64:3636–3643 [View Article][PubMed]
    [Google Scholar]
  19. Eerola E., Lehtonen O. P. 1988; Optimal data processing procedure for automatic bacterial identification by gas-liquid chromatography of cellular fatty acids. J Clin Microbiol 26:1745–1753[PubMed]
    [Google Scholar]
  20. Felsenstein J. 1995; phylip (phylogeny inference package) version 3.57c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
    [Google Scholar]
  21. Foster G., Ross H. M., Malnick H., Willems A., Hutson R. A., Reid R. J., Collins M. D. 2000; Phocoenobacter uteri gen. nov., sp. nov., a new member of the family Pasteurellaceae Pohl (1979) 1981 isolated from a harbour porpoise (Phocoena phocoena). Int J Syst Evol Microbiol 50:135–139 [View Article][PubMed]
    [Google Scholar]
  22. Foster G., Higgins R., Leclair D., Korczak B. M., Mikaelian I., Patterson I. A. P, Kuhnert P. 2011; Proposal of Bisgaardia hudsonensis gen. nov., sp. nov. and an additional genomospecies, isolated from seals, as new members of the family Pasteurellaceae . Int J Syst Evol Microbiol 61:3016–3022 [View Article][PubMed]
    [Google Scholar]
  23. Garvie E. I. 1978; Streptococcus raffinolactis Orla-Jensen and Hansen, a group N streptococcus found in raw milk. Int J Syst Bacteriol 28:190–193 [View Article]
    [Google Scholar]
  24. Gregersen R. H., Neubauer C., Christensen H., Bojesen A. M., Hess M., Bisgaard M. 2009; Comparative studies on [Pasteurella] testudinis and [P.] testudinis-like bacteria and proposal of Chelonobacter oris gen. nov., sp. nov. as a new member of the family Pasteurellaceae . Int J Syst Evol Microbiol 59:1583–1588 [View Article][PubMed]
    [Google Scholar]
  25. Hansen M. J. 2013 Co-evolution of selected Pasteurellaceae species and their hosts PhD thesis, Faculty of Health and Medical Sciences, University of Copenhagen
    [Google Scholar]
  26. Hansen M. J., Bertelsen M. F., Christensen H., Bojesen A. M., Bisgaard M. 2012; Otariodibacter oris gen. nov., sp. nov., a member of the family Pasteurellaceae isolated from the oral cavity of pinnipeds. Int J Syst Evol Microbiol 62:2572–2578 [View Article][PubMed]
    [Google Scholar]
  27. Hansen M. J., Bertelsen M. F., Christensen H., Bojesen A. M. 2015a; Bisgaardia miroungae sp. nov., a new member of the family Pasteurellaceae isolated from the oral cavity of northern elephant seals (Mirounga angustirostris), and emended description of the genus Bisgaardia . Int J Syst Evol Microbiol 65:388–392 [View Article][PubMed]
    [Google Scholar]
  28. Hansen M. J., Braaten M. S., Bojesen A. M., Christensen H., Sonne C., Dietz R., Bertelsen M. F. 2015b; Ursidibacter maritimus gen. nov., sp. nov. and Ursidibacter arcticus sp. nov., two new members of the family Pasteurellaceae isolated from the oral cavity of bears. Int J Syst Evol Microbiol 65:3683–3689 [View Article]
    [Google Scholar]
  29. Jacobsen M. J., Nielsen J. P. 1995; Development and evaluation of a selective and indicative medium for isolation of Actinobacillus pleuropneumoniae from tonsils. Vet Microbiol 47:191–197 [View Article][PubMed]
    [Google Scholar]
  30. Korczak B. M., Kuhnert P. 2008; Phylogeny of Pasteurellaceae . In Pasteurellaceae. Biology, Genomics and Molecular Aspects pp 27–52Edited by Kuhnert P., Christensen H. Norwich: Caister Academic Press;
    [Google Scholar]
  31. Korczak B., Christensen H., Emler S., Frey J., Kuhnert P. 2004; Phylogeny of the family Pasteurellaceae based on rpoB sequences. Int J Syst Evol Microbiol 54:1393–1399 [View Article][PubMed]
    [Google Scholar]
  32. Korczak B. M., Bisgaard M., Christensen H., Kuhnert P. 2014; Frederiksenia canicola gen. nov., sp. nov. isolated from dogs and human dog-bite wounds. Antonie van Leeuwenhoek 105:731–741 [View Article][PubMed]
    [Google Scholar]
  33. Kuhnert P., Korczak B., Falsen E., Straub R., Hoops A., Boerlin P., Frey J., Mutters R. 2004; Nicoletella semolina gen. nov., sp. nov., a new member of Pasteurellaceae isolated from horses with airway disease. J Clin Microbiol 42:5542–5548 [View Article][PubMed]
    [Google Scholar]
  34. Kuhnert P., Scholten E., Haefner S., Mayor D., Frey J. 2010; Basfia succiniciproducens gen. nov., sp. nov., a new member of the family Pasteurellaceae isolated from bovine rumen. Int J Syst Evol Microbiol 60:44–50 [View Article][PubMed]
    [Google Scholar]
  35. Mollet C., Drancourt M., Raoult D. 1997; rpoB sequence analysis as a novel basis for bacterial identification. Mol Microbiol 26:1005–1011 [View Article][PubMed]
    [Google Scholar]
  36. Montgomery J. M., Gillespie D., Sastrawan P., Fredeking T. M., Stewart G. L. 2002; Aerobic salivary bacteria in wild and captive Komodo dragons. J Wildl Dis 38:545–551 [View Article][PubMed]
    [Google Scholar]
  37. Mühldorfer K., Speck S., Wibbelt G. 2014; Proposal of Vespertiliibacter pulmonis gen. nov., sp. nov. and two genomospecies as new members of the family Pasteurellaceae isolated from European bats. Int J Syst Evol Microbiol 64:2424–2430 [View Article][PubMed]
    [Google Scholar]
  38. Nørskov-Lauritsen N., Kilian M. 2006; Reclassification of Actinobacillus actinomycetemcomitans, Haemophilus aphrophilus, Haemophilus paraphrophilus and Haemophilus segnis as Aggregatibacter actinomycetemcomitans gen. nov., comb. nov., Aggregatibacter aphrophilus comb. nov. and Aggregatibacter segnis comb. nov., and emended description of Aggregatibacter aphrophilus to include V factor-dependent and V factor-independent isolates. Int J Syst Evol Microbiol 56:2135–2146 [View Article][PubMed]
    [Google Scholar]
  39. Nørskov-Lauritsen N., Bruun B., Kilian M. 2005; Multilocus sequence phylogenetic study of the genus Haemophilus with description of Haemophilus pittmaniae sp. nov. Int J Syst Evol Microbiol 55:449–456 [View Article][PubMed]
    [Google Scholar]
  40. Olsen I., Møller K. 2005; Genus II Actinobacillus Brumpt 1910, 948. In Bergey's Manual of Systematic Bacteriology vol 2, 2nd edn. pp 866–883Edited by Brenner D. J., Krieg N. R., Staley J. T., Garrity G. M. New York: Springer;
    [Google Scholar]
  41. Olsen G. J., Matsuda H., Hagstrom R., Overbeek R. 1994; fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput Appl Biosci 10:41–48[PubMed]
    [Google Scholar]
  42. Olsen I., Dewhirst F., Paster B., Busse H. 2005; Family Pasteurellaceae . In Bergey's Manual of Systematic Bacteriology vol 2, 2nd edn. pp 851–856Edited by Brenner D. J., Krieg N. R., Staley J. T., Garrity G. M. New York: Springer;
    [Google Scholar]
  43. Osawa R., Rainey F., Fujisawa T., Lang E., Busse H. J., Walsh T. P., Stackebrandt E. 1995; Lonepinella koalarum gen. nov., sp. nov., a new tannin protein complex degrading bacterium. Syst Appl Microbiol 18:368–373 [View Article]
    [Google Scholar]
  44. Patel S. M., Mo J. H., Walker M. T., Adley B., Noskin G. A. 2004; Epidural abscess and osteomyelitis due to Actinobacillus actinomycetemcomitans . Diagn Microbiol Infect Dis 50:283–285 [View Article][PubMed]
    [Google Scholar]
  45. Rice P., Longden I., Bleasby A. 2000; EMBOSS: the European molecular biology open software suite. Trends Genet 16:276–277 [View Article][PubMed]
    [Google Scholar]
  46. Sasser M. 1990 Identification of bacteria by gas chromatography of cellular fatty acids MIDI Technical Note 101 Newark, DE: MIDI Inc;
    [Google Scholar]
  47. Snipes K. P., Biberstein E. L. 1982; Pasteurella testudinis sp. nov.: a parasite of desert tortoises (Gopherus agassizi). Int J Syst Bacteriol 32:201–210 [View Article]
    [Google Scholar]
  48. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 [View Article][PubMed]
    [Google Scholar]
  49. Tindall B. J. 1990a; A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13:128–130 [View Article]
    [Google Scholar]
  50. Tindall B. J. 1990b; Lipid composition of Halobacterium lacusprofundi . FEMS Microbiol Lett 66:199–202 [View Article]
    [Google Scholar]
  51. Viallard V., Poirier I., Cournoyer B., Haurat J., Wiebkin S., Ophel-Keller K., Balandreau J. 1998; Burkholderia graminis sp. nov., a rhizospheric Burkholderia species, and reassessment of [Pseudomonas] phenazinium, [Pseudomonas] pyrrocinia and [Pseudomonas] glathei as Burkholderia . Int J Syst Bacteriol 48:549–563 [View Article][PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.000759
Loading
/content/journal/ijsem/10.1099/ijsem.0.000759
Loading

Data & Media loading...

Supplements

Supplementary Data

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error