1887

Abstract

A bacterial strain, designated SH7, was isolated from the hydrocarbon-contaminated soil of a pilot plant (Granada, Spain). The strain was selected for its capacity to grow in media supplemented with methyl -butyl ether (MTBE) as sole energy and carbon source. Strain SH7 was a Gram-stain-positive, facultatively anaerobic, spore-forming, rod-shaped bacterium. Phylogenetic analysis using 16S rRNA gene sequences showed that strain SH7 belongs to a cluster comprising species of the genus and was closely related to KK19 (97 % 16S rRNA gene sequence similarity) and TOD45 (98 %). DNA–DNA hybridization tests showed low relatedness of strain SH7 with the type strains of (16.9 ± 1.5 %) and (16.6 ± 2.1 %). The cell wall of strain SH7 contained -diaminopimelic acid. The predominant respiratory quinone was MK-7, and anteiso-C15 : 0 (32.9 %) and C16 : 0 (29.0 %) were the predominant cellular fatty acids. Phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol and three unknown aminophospholipids were the major phospholipids. The DNA G+C content was 44.3 mol%. Data obtained in this study indicate that strain SH7 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is SH7 ( = CECT 8558 = DSM 29760).

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2016-02-01
2024-04-20
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References

  1. Altschul S. F., Madden T. L., Schäffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J. 1997; Gapped blast psi-blast: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402 [View Article][PubMed]
    [Google Scholar]
  2. Ash C., Priest F. G., Collins M. D. 1993; Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus . Antonie van Leeuwenhoek 64:253–260 [View Article][PubMed]
    [Google Scholar]
  3. Barrow G. I., Feltham R. K. A. editors 1993 Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd edn.. Cambridge: Cambridge University Press; [View Article]
    [Google Scholar]
  4. Berge O., Guinebretière M.-H., Achouak W., Normand P., Heulin T. 2002; Paenibacillus graminis sp. nov. and Paenibacillus odorifer sp. nov., isolated from plant roots, soil and food. Int J Syst Evol Microbiol 52:607–616 [View Article][PubMed]
    [Google Scholar]
  5. Cashion P., Holder-Franklin M. A., McCully J., Franklin M. 1977; A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81:461–466 [View Article][PubMed]
    [Google Scholar]
  6. Daane L. L., Harjono I., Barns S. M., Launen L. A., Palleroni N. J., Häggblom M. M. 2002; PAH-degradation by Paenibacillus spp. and description of Paenibacillus naphthalenovorans sp. nov., a naphthalene-degrading bacterium from the rhizosphere of salt marsh plants. Int J Syst Evol Microbiol 52:131–139 [View Article][PubMed]
    [Google Scholar]
  7. De Ley J., Cattoir H., Reynaerts A. 1970; The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12:133–142 [View Article][PubMed]
    [Google Scholar]
  8. Elo S., Suominen I., Kampfer P., Juhanoja J., Salkinoja-Salonen M., Haahtela K. 2001; Paenibacillus borealis sp. nov., a nitrogen fixing species isolated from spruce forest humus in Finland. Int J Syst Evol Microbiol 51:535–545 [CrossRef]
    [Google Scholar]
  9. François A., Mathis H., Godefroy D., Piveteau P., Fayolle F., Monot F. 2002; Biodegradation of methyl tert-butyl ether and other fuel oxygenates by a new strain, Mycobacterium austroafricanum IFP 2012. Appl Environ Microbiol 68:2754–2762 [View Article][PubMed]
    [Google Scholar]
  10. Goesaert H., Brijs K., Veraverbeke W. S., Courtin C. M., Gebruers K., Delcour J. A. 2005; Wheat flour constituents: how they impact bread quality, and how to impact their functionality. Trends Food Sci Technol 16:12–30 [View Article]
    [Google Scholar]
  11. Guisado I. M., Purswani J., González-López J., Pozo C. 2015; Physiological and genetic screening methods for the isolation of methyl tert-butyl ether-degrading bacteria for bioremediation purposes. Int Biodeterior Biodegradation 97:67–74 [View Article]
    [Google Scholar]
  12. Herman D. C., Frankenberger W. T. 1999; Bacterial reduction of perchlorate and nitrate in water. J Environ Qual 28:1018–1024 [View Article]
    [Google Scholar]
  13. Huss V. A. R, Festl H., Schleifer K. H. 1983; Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4:184–192 [View Article][PubMed]
    [Google Scholar]
  14. Kharoune M., Pauss A., Lebeault J. M. 2001; Aerobic biodegradation of an oxygenates mixture: ETBE, MTBE and TAME in an upflow fixed-bed reactor. Water Res 35:1665–1674 [View Article][PubMed]
    [Google Scholar]
  15. Khianngam S., Tanasupawat S., Akaracharanya A., Kim K. K., Lee K. C., Lee J. S. 2011; Paenibacillus xylanisolvens sp. nov., a xylan-degrading bacterium from soil. Int J Syst Evol Microbiol 61:160–164 [View Article][PubMed]
    [Google Scholar]
  16. Larkin M. A., Blackshields G., Brown N. P., Chenna R., McGettigan P. A., McWilliam H., Valentin F., Wallace I. M., Wilm A., other authors. 2007; clustal w clustal_x version 2.0. Bioinformatics 23:2947–2948 [View Article][PubMed]
    [Google Scholar]
  17. Liu C. Y., Speitel G. E. Jr., Georgiou G. 2001; Kinetics of methyl t-butyl ether cometabolism at low concentrations by pure cultures of butane-degrading bacteria. Appl Environ Microbiol 67:2197–2201 [View Article][PubMed]
    [Google Scholar]
  18. Margeot A., Hahn-Hagerdal B., Edlund M., Slade R., Monot F. 2009; New improvements for lignocellulosic ethanol. Curr Opin Biotechnol 20:372–380 [View Article][PubMed]
    [Google Scholar]
  19. Martín-Platero A. M., Valdivia E., Maqueda M., Martínez-Bueno M. 2007; Fast, convenient, and economical method for isolating genomic DNA from lactic acid bacteria using a modification of the protein “salting-out” procedure. Anal Biochem 366:102–104 [View Article][PubMed]
    [Google Scholar]
  20. Mesbah M., Premachandran U., Whitman W. B. 1989; Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167 [View Article]
    [Google Scholar]
  21. Polizeli M. L. T. M., Rizzatti A. C. S, Monti R., Terenzi H. F., Jorge J. A., Amorim D. S. 2005; Xylanases from fungi: properties and industrial applications. Appl Microbiol Biotechnol 67:577–591 [View Article][PubMed]
    [Google Scholar]
  22. Purswani J., Pozo C., Rodríguez-Díaz M., González-López J. 2008; Selection and identification of bacterial strains with methyl-tert-butyl ether, ethyl-tert-butyl ether, and tert-amyl methyl ether degrading capacities. Environ Toxicol Chem 27:2296–2303 [View Article][PubMed]
    [Google Scholar]
  23. Rai S. K., Roy J. K., Mukherjee A. K. 2010; Characterisation of a detergent-stable alkaline protease from a novel thermophilic strain Paenibacillus tezpurensis sp. nov. AS-S24-II. Appl Microbiol Biotechnol 85:1437–1450 [View Article][PubMed]
    [Google Scholar]
  24. Reynolds E. S. 1963; The use of lead citrate at high pH as an electron-opaque stain in electron microscopy. J Cell Biol 17:208–212 [CrossRef]
    [Google Scholar]
  25. Roncero M. B., Torres A. L., Colom J. F., Vidal T. 2005; The effect of xylanase on lignocellulosic components during the bleaching of wood pulps. Bioresour Technol 96:21–30 [View Article][PubMed]
    [Google Scholar]
  26. Roux V., Raoult D. 2004; Paenibacillus massiliensis sp. nov., Paenibacillus sanguinis sp. nov. and Paenibacillus timonensis sp. nov., isolated from blood cultures. Int J Syst Evol Microbiol 54:1049–1054 [View Article][PubMed]
    [Google Scholar]
  27. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425[PubMed]
    [Google Scholar]
  28. Scheldeman P., Goossens K., Rodríguez-Diaz M., Pil A., Goris J., Herman L., De Vos P., Logan N. A., Heyndrickx M. 2004; Paenibacillus lactis sp. nov., isolated from raw and heat-treated milk. Int J Syst Evol Microbiol 54:885–891 [View Article][PubMed]
    [Google Scholar]
  29. Schumann P. 2011; Peptidoglycan structure. Methods Microbiol 38:101–129 [View Article]
    [Google Scholar]
  30. Shida O., Takagi H., Kadowaki K., Nakamura L. K., Komagata K. 1997; Transfer of Bacillus alginolyticus, Bacillus chondroitinus , Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus . Int J Syst Bacteriol 47:289–298 [View Article][PubMed]
    [Google Scholar]
  31. Silva-Castro G. A., Rodelas B., Perucha C., Laguna J., González-López J., Calvo C. 2013; Bioremediation of diesel-polluted soil using biostimulation as post-treatment after oxidation with Fenton-like reagents: assays in a pilot plant. Sci Total Environ 445-446:347–355 [View Article][PubMed]
    [Google Scholar]
  32. Sirota-Madi A., Olender T., Helman Y., Ingham C., Brainis I., Roth D., Hagi E., Brodsky L., Leshkowitz D., other authors. 2010; Genome sequence of the pattern forming Paenibacillus vortex bacterium reveals potential for thriving in complex environments. BMC Genomics 11:710 [View Article][PubMed]
    [Google Scholar]
  33. Soriano M., Díaz P., Pastor F. I. 2005; Pectinolytic systems of two aerobic sporogenous bacterial strains with high activity on pectin. Curr Microbiol 50:114–118 [View Article][PubMed]
    [Google Scholar]
  34. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. 2011; mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739 [View Article][PubMed]
    [Google Scholar]
  35. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D, Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C, Murray R. G. E, other authors. 1987; International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464 [View Article]
    [Google Scholar]
  36. Weisburg W. G., Barns S. M., Pelletier D. A., Lane D. J. 1991; 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173:697–703[PubMed]
    [Google Scholar]
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