1887

Abstract

A rod-shaped, yellow, Gram-stain-negative, non-flagellated, aerobic bacterium, designated 5516J-17, was isolated from an air sample collected from Jeju Island, Republic of Korea. It grew in the temperature range of 10−37 °C (optimum 28–30 °C), pH 6.0–11.0 (optimum, pH 7.0) and 0–1 % NaCl (w/v). Phylogenetic trees generated using 16S rRNA gene sequences revealed that strain 5516J-17 belongs to the genus showing 96.9 % sequence similarity to the most closely related species, DSM 74. The cellular fatty acids comprised large amounts (>10 % of total fatty acids) of summed feature 3 (Cω7 and/or Cω6) and Cω5, and moderate amounts (5–10 % of total fatty acids) of iso-C3-OH, iso-Cand C. The DNA G+C content was 55.7 mol % and MK-7 was the predominant isoprenoid quinone. Polar lipids were phosphatidylethanolamine, two unknown aminophospholipids, one unknown aminolipid and one unknown lipid. On the basis of this phenotypic and polyphasic taxonomy study, it is suggested that strain 5516J-17represents a novel species within the genus , with the proposed name . The type strain is 5516J-17 (= KACC 17323 = DSM 28388 = JCM 19950).

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2016-06-10
2024-04-24
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References

  1. Ahn J. H., Weon H. Y., Kim S. J., Hong S. B., Seok S. J., Kwon S. W. 2014; Spirosoma oryzae sp. nov., isolated from rice soil and emended description of the genus Spirosoma . Int J Syst Evol Microbiol 64:3230–3234 [View Article][PubMed]
    [Google Scholar]
  2. Baik K. S., Kim M. S., Park S. C., Lee D. W., Lee S. D., Ka J. O., Choi S. K., Seong C. N. 2007; Spirosoma rigui sp. nov., isolated from fresh water. Int J Syst Evol Microbiol 57:2870–2873 [View Article][PubMed]
    [Google Scholar]
  3. Breznak J. A., Costilow R. N. 1994; Physicochemical factors growth. In Methods for General and Molecular Bacteriology pp 137–154 Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. Washington, DC: American Society for Microbiology;
    [Google Scholar]
  4. Chang X., Jiang F., Wang T., Kan W., Qu Z., Ren L., Fang C., Peng F. 2014; Spirosoma arcticum sp. nov., isolated from high arctic glacial till. Int J Syst Evol Microbiol 64:2233–2237 [View Article][PubMed]
    [Google Scholar]
  5. Felsenstein J. 1981; Evolutionary trees from DNA sequences: A maximum likelihood approach. J Mol Evol 17:368–376[PubMed] [CrossRef]
    [Google Scholar]
  6. Felsenstein J. 1985; Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783–791 [CrossRef]
    [Google Scholar]
  7. Finster K. W., Herbert R. A., Lomstein B. A. 2009; Spirosomaspitsbergense sp. nov. and Spirosoma luteum sp. nov., isolated from a high arctic permafrost soil, and emended description of the genus Spirosoma . Int J Syst Evol Microbiol 59:839–844 [View Article][PubMed]
    [Google Scholar]
  8. Fitch W. M. 1971; Toward defining the course of evolution: Minimum change for a specific tree topology. Syst Zool 20:406–416 [CrossRef]
    [Google Scholar]
  9. Fries J., Pfeiffer S., Kuffner M., Sessitsch A. 2013; Spirosoma endophyticum sp. nov., isolated from Zn- and Cd-accumulating Salix caprea . Int J Syst Evol Microbiol 63:4586–4590 [View Article][PubMed]
    [Google Scholar]
  10. Gonzalez J. M., Saiz-Jimenez C. 2002; A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature. Environ Microbiol 4:770–773[PubMed] [CrossRef]
    [Google Scholar]
  11. Kim O. S., Cho Y. J., Lee K., Yoon S. H., Kim M., Na H., Park S. C., Jeon Y. S., Lee J. H., other authors. 2012; Introducing EzTaxon-e: A prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716–721 [View Article][PubMed]
    [Google Scholar]
  12. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120[PubMed] [CrossRef]
    [Google Scholar]
  13. Lane D. J. 1991; 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics pp. 115–175Edited by Stackebrandt E., Goodfellow M. Chichester: Wiley;
    [Google Scholar]
  14. Larkin J. M., Borrall R. 1984; Family I. Spirosomaceae Larkin and Borrall 1978, 595AL . In Bergey’s Manual of Systematic Bacteriology vol. 1 pp. 125–126Edited by Krieg N. R., Holt J. G. Baltimore: Williams & Wilkins;
    [Google Scholar]
  15. Minnikin D. E., O'Donnell A. G., Goodfellow M., Alderson G., Athalye M., Schaal A., Parlett J. H. 1984; An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233–241 [CrossRef]
    [Google Scholar]
  16. Pruesse E., Peplies J., Glöckner F. O. 2012; SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 28:1823–1829 [View Article][PubMed]
    [Google Scholar]
  17. Saitou N., Nei M. 1987; The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425[PubMed]
    [Google Scholar]
  18. Smibert R. M., Krieg N. R. 1994; Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp.607–653Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. Washington, DC: American Society for Microbiology;
    [Google Scholar]
  19. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. 2013; MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729 [View Article][PubMed]
    [Google Scholar]
  20. Ten L. N., Xu J. L., Jin F. X., Im W. T., Oh H. M., Lee S. T. 2009; Spirosoma panaciterrae sp. nov., isolated from soil. Int J Syst Evol Microbiol 59:331–335 [View Article][PubMed]
    [Google Scholar]
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