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Micromonospora sediminis sp. nov., isolated from mangrove sediment

  • Authors: Wongsakorn Phongsopitanun1​,  Takuji Kudo2​,  Moriya Ohkuma2​,  Pattama Pittayakhajonwut3​,  Khanit Suwanborirux4​, Somboon Tanasupawat1​
    • VIEW AFFILIATIONS
    • 1​ 1​ Department of Biochemistry and Microbiology, Faculty of Pharmaceutical Sciences, Chulalongkorn University, Bangkok 10330, Thailand 2​ 2​ Japan Collection of Microorganisms, RIKEN BioResource Center, Tsukuba, Ibaraki 305-0074, Japan 3​ 3​ National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Thailand Science Park, Pathumthani 12120, Thailand 4​ 4​ Department of Pharmacognosy and Pharmaceutical Botany, Faculty of Pharmaceutical Sciences, Chulalongkorn University, Bangkok 10330, Thailand
  • Correspondence Somboon Tanasupawat Somboon.T@chula.ac.th
  • First Published Online: 01 August 2016, International Journal of Systematic and Evolutionary Microbiology 66: 3235-3240, doi: 10.1099/ijsem.0.001175
  • Subject: New taxa - Actinobacteria
  • Received:
  • Accepted:
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  • The novel actinomycete, strain CH3-3, was isolated from mangrove sediment collected from Chonburi Province, Thailand. On the basis of its spore morphology and chemotaxonomic characteristics, the strain belonged to the genus Micromonospora . It contained meso-diaminopimelic acid, glucose, mannose, xylose, ribose and rhamnose in the whole-cell hydrolysate, MK-10(H4), MK-10(H6) and MK-10(H8) as major menaquinones, and iso-C15 : 0, iso-C16 : 0 and iso-C17 : 0 as major cellular fatty acids. blast analysis of 16S rRNA gene sequences revealed that the strain showed highest similarity with Micromonospora palomenae NEAU-CX1(98.97 %) and Micromonospora coxensis 2–30-b(28) (98.97 %). Based on phylogenetic tree analysis of the 16S rRNA gene sequence, the strain formed a cluster with M. palomenae NEAU-CX1, Micromonospora halophytica DSM 43171, M. coxensis 2-30-b(28) and Micromonospora purpureochromogenes DSM 43821. On the basis of phenotypic differences and DNA–DNA relatedness evidence, strain CH3-3 could be clearly distinguished from the closely related species of the genus Micromonospora and represents a novel species of the genus Micromonospora for which the name Micromonospora sediminis sp. nov. is proposed. The type strain is CH3-3 (=JCM 18523=PCU 350=TISTR 2396).

  • The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene and gyrB gene sequences of strain CH3-3 are AB889541 and LC125631, respectively.

  • Two supplementary tables and two supplementary figures are available with the online Supplementary Material.

  • Abbreviations:
    DAP diaminopimelic acid
    DPG diphosphatidylglycerol
    PE phosphatidylethanolamine
    PG phosphatidylglycerol
    PI phosphatidylinositol

© 2016 IUMS | Published by the Microbiology Society

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2016-08-01
2017-07-21
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