1887

Abstract

A novel filamentous, halophilic, thermotolerant bacterium, strain SMBg3 was isolated from superficial sediment of a solar saltern in Sfax, Tunisia. The isolate is Gram-staining-positive, aerobic, catalase- and oxidase-positive. Optimum growth occurred at 40–45 °C, with 10 % (w/v) NaCl and at pH 8.0–9.0. Long and well developed aerial and substrate mycelia, with long chains of fluorescent and circular spores, were observed on all tested media. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain SMBg3 belongs to an independent phylogenetic lineage of the family and shows a gene sequence similarity of 94 % with DSM 45169 94.2 % with DSM 45196, 94.3 % with KCTC 29149, 94.3 % with DSM 45474 and 94.5 % with CECT 8506. The predominant menaquinone is MK-7, but MK-8 and some minor unidentified components are also present in trace amounts. The major cellular fatty acids are anteiso-C, iso-C and iso-C. In addition to four major polar lipids identified as phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and phosphatidylmethylethanolamine, five minor unknown lipids were detected in cell membranes. The DNA G+C content of strain SMBg3 is 51.2 mol%. Strain SMBg3 is distinct from recognized genera of the family by morphological, biochemical and chemotaxonomic characteristics. On the basis of physiological and phylogenetic data, strain SMBg3 represents a novel species of a new genus in the family for which the name gen. nov., sp. nov. is proposed. The type strain of the type species is SMBg3 (=DSM 102817=CCUG 68698).

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2016-12-01
2024-04-18
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References

  1. Addou A. N., Schumann P., Spröer C., Hacene H., Cayol J. L., Fardeau M. L. 2012; Melghirimyces algeriensis gen. nov., sp. nov., a member of the family Thermoactinomycetaceae, isolated from a salt lake. Int J Syst Evol Microbiol 62:1491–1498 [View Article][PubMed]
    [Google Scholar]
  2. Altschul S. F., Madden T. L., Schäffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J. 1997; Gapped blast and PSI-blast: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402 [View Article][PubMed]
    [Google Scholar]
  3. Atlas R. M. 1993 Handbook of Microbiological Media126–127 Edited by Parks L. C. Boca Raton, FL: CRC Press;
    [Google Scholar]
  4. Ben Fguira-Fourati L., Bejar S., Mellouli L. 2012; Isolation and screening of Streptomyces from soil of Tunisian oases ecosystem for nonpolyenic antifungal metabolites. Afr J Biotechnol 29:7512–7519 [View Article]
    [Google Scholar]
  5. Boujelben I., Gomariz M., Martínez-García M., Santos F., Peña A., López C., Antón J., Maalej S. 2012; Spatial and seasonal prokaryotic community dynamics in ponds of increasing salinity of Sfax solar saltern in Tunisia. Antonie van Leeuwenhoek 101:845–857 [View Article][PubMed]
    [Google Scholar]
  6. Cashion P., Holder-Franklin M. A., McCully J., Franklin M. 1977; A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81:461–466 [View Article][PubMed]
    [Google Scholar]
  7. Chun J., Bae K. S., Moon E. Y., Jung S. O., Lee H. K., Kim S. J. 2000; Nocardiopsis kunsanensis sp. nov., a moderately halophilic actinomycete isolated from a saltern. Int J Syst Evol Microbiol 50:1909–1913 [View Article][PubMed]
    [Google Scholar]
  8. Cole J. R., Wang Q., Cardenas E., Fish J., Chai B., Farris R. J., Kulam-Syed-Mohideen A. S., McGarrell D. M., Marsh T. et al. 2009; The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37:D141–D145 [View Article][PubMed]
    [Google Scholar]
  9. Collins M. D., Pirouz T., Goodfellow M., Minnikin D. E. 1977; Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100:221–230 [View Article][PubMed]
    [Google Scholar]
  10. Cowan S. T., Steel K. J. 1965; Characters of Gram-Positive Bacteria. Manual for the Identificafion of Medical Bacteria Cambridge: Cambridge University Press;
    [Google Scholar]
  11. Cross T., Walker P. D., Gould G. W. 1968; Thermophilic actinomycetes producing resistant endospores. Nature 220:352–354 [View Article][PubMed]
    [Google Scholar]
  12. Embley T. M., Wait R. 1994; Structural lipids of Eubacteria. In Chemical Methods in Prokaryotic Systematics pp. 141–147 Edited by Goodfellow M., O’Donnell A. G. New York: John Wiley and Sons;
    [Google Scholar]
  13. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791 [View Article]
    [Google Scholar]
  14. Fitch W. M. 1971; Toward defining the course of evolution: minimum change for a specific tree topology. Sys Zool 20:406–416 [CrossRef]
    [Google Scholar]
  15. Gordon R. E., Mihm J. M. 1957; A comparative study of some strain received as Nocardiae . J Bacteriol 73:15–27[PubMed]
    [Google Scholar]
  16. Gordon R. E., Barnett D. A., Handerhan J. E., Pang C. H. N. 1974; Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. IntJ Syst Bacteriol 24:54–63 [View Article]
    [Google Scholar]
  17. Groth I., Schumann P., Weiss N., Martin K., Rainey F. A. 1996; Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46:234–239 [View Article][PubMed]
    [Google Scholar]
  18. Guérin-Faublée V., Karray S., Tilly B., Richard Y. 1992; Actinomyces pyogenes: conventional and Api system bacteriologic study of 103 strains isolated from ruminants. Ann Rech Vet 23:151–160 (in French) [PubMed]
    [Google Scholar]
  19. Hall T. A. 1999; BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98
    [Google Scholar]
  20. Hatayama K., Kuno T. 2015; Croceifilum oryzae gen. nov., sp. nov., isolated from rice paddy soil. Int J Syst Evol Microbiol 65:4061–4065 [View Article]
    [Google Scholar]
  21. Hatayama K., Shoun H., Ueda Y., Nakamura A. 2005; Planifilum fimeticola gen. nov., sp. nov. and Planifilum fulgidum sp. nov., novel members of the family ‘Thermoactinomycetaceae' isolated from compost. Int J Syst Evol Microbiol 55:2101–2104 [View Article][PubMed]
    [Google Scholar]
  22. Joffin J.-N., Leyral G. 2006 Microbiologie Technique. Tome 1: Dictionnaire Des Technique, 4th edn. Bordeaux: CRDP d’Aquitaine;
    [Google Scholar]
  23. Jukes T. H., Cantor C. R. 1969; Evolution of protein molecules. In Mammalian Protein Metabolism vol. 3 pp. 21–132 Edited by Munro H. N. New York: Academic Press; [CrossRef]
    [Google Scholar]
  24. Li J., Zhang G. T., Yang J., Tian X. P., Wang F. Z., Zhang C. S., Zhang S., Li W. J. 2012; Marininema mesophilum gen. nov., sp. nov., a thermoactinomycete isolated from deep sea sediment, and emended description of the family Thermoactinomycetaceae . Int J Syst Evol Microbiol 62:1383–1388 [CrossRef]
    [Google Scholar]
  25. Li J., Qin S., You Z. Q., Long L. J., Tian X. P., Wang F. Z., Zhang S. 2013; Melghirimyces profundicolus sp. nov., isolated from a deep-sea sediment. Int J Syst Evol Microbiol 63:4552–4556 [View Article][PubMed]
    [Google Scholar]
  26. Matsuo Y., Katsuta A., Matsuda S., Shizuri Y., Yokota A., Kasai H. 2006; Mechercharimyces mesophilus gen. nov., sp. nov. and Mechercharimyces asporophorigenens sp. nov., antitumour substance-producing marine bacteria, and description of Thermoactinomycetaceae fam. nov. Int J Syst Evol Microbiol 56:2837–2842 [View Article][PubMed]
    [Google Scholar]
  27. Mesbah M., Premachandran U., Whitman W. B. 1989; Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167 [View Article]
    [Google Scholar]
  28. Minnikin D. E., Collins M. D., Goodfellow M. 1979; Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47:87–95 [View Article]
    [Google Scholar]
  29. Park D. J., Dastager S. G., Lee J. C., Yeo S. H., Yoon J. H., Kim C. J. 2007; Shimazuella kribbensis gen. nov., sp. nov., a mesophilic representative of the family Thermoactinomycetaceae . Int J Syst Evol Microbiol 57:2660–2664 [View Article][PubMed]
    [Google Scholar]
  30. Rainey F. A., Ward-Rainey N., Kroppenstedt R. M., Stackebrandt E. 1996; The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46:1088–1092 [View Article][PubMed]
    [Google Scholar]
  31. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425[PubMed]
    [Google Scholar]
  32. Schumann P. 2011; Peptidoglycan structure. Methods Microbiol 38:101–129 [CrossRef]
    [Google Scholar]
  33. Shirling E. B., Gottlieb D. 1966; Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313–340 [View Article]
    [Google Scholar]
  34. Stead D. E., Sellwood J. E., Wilson J., Viney I. 1992; Evaluation of a commercial microbial identification system based on fatty acid profiles for rapid, accurate identification of plant pathogenic bacteria. J Appl Bacteriol 72:315–321 [View Article]
    [Google Scholar]
  35. Tamaoka J., Komagata K. 1984; Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25:125–128 [View Article]
    [Google Scholar]
  36. Tsubouchi T., Shimane Y., Mori K., Usui K., Hiraki T., Tame A., Uematsu K., Maruyama T., Hatada Y. 2013; Polycladomyces abyssicola gen. nov., sp. nov., a thermophilic filamentous bacterium isolated from hemipelagic sediment. Int J Syst Evol Microbiol 63:1972–1981 [View Article][PubMed]
    [Google Scholar]
  37. von Jan M., Riegger N., Pötter G., Schumann P., Verbarg S., Spröer C., Rohde M., Lauer B., Labeda D. P., Klenk H. P. 2011; Kroppenstedtia eburnea gen. nov., sp. nov., a thermoactinomycete isolated by environmental screening, and emended description of the family Thermoactinomycetaceae Matsuo et al. 2006 emend. Yassin et al. 2009. Int J Syst Evol Microbiol 61:2304–2310 [View Article][PubMed]
    [Google Scholar]
  38. Yang G., Qin D., Wu C., Yuan Y., Zhou S., Cai Y. 2013; Kroppenstedtia guangzhouensis sp. nov., a thermoactinomycete isolated from soil. Int J Syst Evol Microbiol 63:4077–4080 [View Article][PubMed]
    [Google Scholar]
  39. Yassin A. F., Hupfer H., Klenk H. P., Siering C. 2009; Desmospora activa gen. nov., sp. nov., a thermoactinomycete isolated from sputum of a patient with suspected pulmonary tuberculosis, and emended description of the family Thermoactinomycetaceae Matsuo et al. 2006. Int J Syst Evol Microbiol 59:454–459 [View Article][PubMed]
    [Google Scholar]
  40. Yoon J. H., Kim I. G., Shin Y. K., Park Y. H. 2005; Proposal of the genus Thermoactinomyces sensu stricto and three new genera, Laceyella, Thermoflavimicrobium and Seinonella, on the basis of phenotypic, phylogenetic and chemotaxonomic analyses. Int J Syst Evol Microbiol 55:395–400 [View Article][PubMed]
    [Google Scholar]
  41. Yu T. T., Zhang B. H., Yao J. C., Tang S. K., Zhou E. M., Yin Y. R., Wei D. Q., Ming H., Li W. J. 2012; Lihuaxuella thermophila gen. nov., sp. nov., isolated from a geothermal soil sample in Tengchong, Yunnan, south-west China. Antonie van Leeuwenhoek 102:711–718 [View Article][PubMed]
    [Google Scholar]
  42. Zarparvar P., Amoozegar M. A., Nikou M. M., Schumann P., Ventosa A. 2014; Salinithrix halophila gen. nov., sp. nov., a halophilic bacterium in the family Thermoactinomycetaceae . Int J Syst Evol Microbiol 64:4115–4119 [View Article][PubMed]
    [Google Scholar]
  43. Zhou E. M., Yu T. T., Liu L., Ming H., Yin Y. R., Dong L., Tseng M., Nie G. X., Li W. J., Hong Ming L. L. 2014; Geothermomicrobium terrae gen. nov., sp. nov., a novel member of the family Thermoactinomycetaceae . Int J Syst Evol Microbiol 64:2998–3004 [View Article][PubMed]
    [Google Scholar]
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