1887

Abstract

A new betaproteobacterium, CGII-59m2, was isolated from an activated sludge bioreactor which treated landfill leachate. The 16S rRNA gene sequence analysis revealed that strain CGII-59m2 belonged to the family and shared the highest pairwise similarity values with LMG 24012 (97.7 %), various species of the genus (97.3–97.0 %) and LMG 24812 (97.0 %). Cells of strain CGII-59m2 were rod-shaped, non-motile, and oxidase- and catalase-positive. The predominant fatty acids were Cω7, C, cyclo C and Cω7, the major respiratory quinone was Q-8, and the main polar lipids were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and an unknown phospholipid. The G+C content of the genomic DNA of strain CGII-59m2 was 62.3 mol%. The new bacterium can be distinguished from the closely related type strains based on its non-motile cells and its high Cω7 fatty acid content. On the basis of the phenotypic, chemotaxonomic and molecular data, strain CGII-59m2 is considered to represent a novel species of a new genus, for which the name gen. nov., sp. nov. is proposed. The type strain is CGII-59m2 (=DSM 29806=NCAIM B.02615).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.001674
2017-03-01
2024-04-16
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/67/3/627.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.001674&mimeType=html&fmt=ahah

References

  1. Overmann J. Principles of enrichment, isolation, cultivation and preservation of prokaryotes. In Rosenberg E, DeLong EF, Lory S, Stackebrandt E, Thompson F et al. (editors) The Prokaryotes, Prokaryotic Biology and Symbiotic Associations, 4th ed. Berlin: Springer-Verlag; 2013 pp. 149–207
    [Google Scholar]
  2. Felföldi T, Kovács E, Fikó DR, Tankó G, Szabó A et al. Unconventional strategies for the cultivation of new bacterial strains from aquatic environments. Acta Microbiol Immunol Hung 2015; 62:150–151
    [Google Scholar]
  3. Felföldi T, Vengring A, Kéki Z, Márialigeti K, Schumann P et al. Eoetvoesia caeni gen. nov., sp. nov., isolated from an activated sludge system treating coke plant effluent. Int J Syst Evol Microbiol 2014; 64:1920–1925 [View Article][PubMed]
    [Google Scholar]
  4. Claus D. A standardized gram staining procedure. World J Microbiol Biotechnol 1992; 8:451–452 [View Article][PubMed]
    [Google Scholar]
  5. Heimbrook ME, Wang WL, Campbell G. Staining bacterial flagella easily. J Clin Microbiol 1989; 27:2612–2615[PubMed]
    [Google Scholar]
  6. Tarrand JJ, Gröschel DH. Rapid, modified oxidase test for oxidase-variable bacterial isolates. J Clin Microbiol 1982; 16:772–774[PubMed]
    [Google Scholar]
  7. Cowan ST, Steel KJ. Manual for the Identification of Medical Bacteria, 2nd ed. Cambridge: Cambridge University Press; 1974
    [Google Scholar]
  8. Smibert RM, Krieg NR. Phenotypic characterization. In Gerhardt P, Murray RGE, Wood WA, Krieg NR. (editors) Methods for General and Molecular Bacteriology Washington, DC: American Society for Microbiology; 1994 pp 607–654
    [Google Scholar]
  9. Hugh R, Leifson E. The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various gram negative bacteria. J Bacteriol 1953; 66:24–26[PubMed]
    [Google Scholar]
  10. Felföldi T, Kéki Z, Sipos R, Márialigeti K, Tindall BJ et al. Ottowia pentelensis sp. nov., a floc-forming betaproteobacterium isolated from an activated sludge system treating coke plant effluent. Int J Syst Evol Microbiol 2011; 61:2146–2150 [View Article][PubMed]
    [Google Scholar]
  11. Tóth EM, Schumann P, Borsodi AK, Kéki Z, Kovács AL et al. Wohlfahrtiimonas chitiniclastica gen. nov., sp. nov., a new gammaproteobacterium isolated from Wohlfahrtia magnifica (Diptera: Sarcophagidae). Int J Syst Evol Microbiol 2008; 58:976–981 [View Article][PubMed]
    [Google Scholar]
  12. Máthé I, Borsodi AK, Tóth EM, Felföldi T, Jurecska L et al. Vertical physico-chemical gradients with distinct microbial communities in the hypersaline and heliothermal Lake Ursu (Sovata, Romania). Extremophiles 2014; 18:501–514 [View Article][PubMed]
    [Google Scholar]
  13. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M et al. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 2012; 62:716–721 [View Article][PubMed]
    [Google Scholar]
  14. Pruesse E, Peplies J, Glöckner FO. SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 2012; 28:1823–1829 [View Article][PubMed]
    [Google Scholar]
  15. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013; 30:2725–2729 [View Article][PubMed]
    [Google Scholar]
  16. Tindall BJ, Rosselló-Móra R, Busse HJ, Ludwig W, Kämpfer P. Notes on the characterization of prokaryote strains for taxonomic purposes. Int J Syst Evol Microbiol 2010; 60:249–266 [View Article][PubMed]
    [Google Scholar]
  17. Kim M, Oh HS, Park SC, Chun J. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol 2014; 64:346–351 [View Article][PubMed]
    [Google Scholar]
  18. Blümel S, Mark B, Busse HJ, Kämpfer P, Stolz A. Pigmentiphaga kullae gen. nov., sp. nov., a novel member of the family Alcaligenaceae with the ability to decolorize azo dyes aerobically. Int J Syst Evol Microbiol 2001; 51:1867–1871 [View Article][PubMed]
    [Google Scholar]
  19. Stolz A, Bürger S, Kuhm A, Kämpfer P, Busse HJ. Pusillimonas noertemannii gen. nov., sp. nov., a new member of the family Alcaligenaceae that degrades substituted salicylates. Int J Syst Evol Microbiol 2005; 55:1077–1081 [View Article][PubMed]
    [Google Scholar]
  20. Vaz-Moreira I, Figueira V, Lopes AR, de Brandt E, Vandamme P et al. Candidimonas nitroreducens gen. nov., sp. nov. and Candidimonas humi sp. nov., isolated from sewage sludge compost. Int J Syst Evol Microbiol 2011; 61:2238–2246 [View Article][PubMed]
    [Google Scholar]
  21. Kim YJ, Kim MK, Im WT, Srinivasan S, Yang DC. Parapusillimonas granuli gen. nov., sp. nov., isolated from granules from a wastewater-treatment bioreactor. Int J Syst Evol Microbiol 2010; 60:1401–1406 [View Article][PubMed]
    [Google Scholar]
  22. Busse H-J, Auling G. Family III. Alcaligenaceae De Ley, Segers, Kersters, Mannheim and Lievens 1986. In Brenner DJ, Krieg NR, Staley JT. (editors) Bergey’s Manual of Systematic Bacteriology, 2nd ed. The Proteobacteria, Part C, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria vol. 2 Berlin: Springer; 2005 pp 647–653
    [Google Scholar]
  23. Lee M, Woo SG, Chae M, Ten LN. Pusillimonas soli sp. nov., isolated from farm soil. Int J Syst Evol Microbiol 2010; 60:2326–2330 [View Article][PubMed]
    [Google Scholar]
  24. Park MS, Park YJ, Jung JY, Lee SH, Park W et al. Pusillimonas harenae sp. nov., isolated from a sandy beach, and emended description of the genus Pusillimonas. Int J Syst Evol Microbiol 2011; 61:2901–2906 [View Article][PubMed]
    [Google Scholar]
  25. Vancanneyt M, Vandamme P, Kersters K. Differentiation of Bordetella pertussis, B. parapertussis, and B. bronchiseptica by whole-cell protein electrophoresis and fatty acid analysis. Int J Syst Bacteriol 1995; 45:843–847 [View Article]
    [Google Scholar]
  26. Vandamme PA, Peeters C, Cnockaert M, Inganäs E, Falsen E et al. Bordetella bronchialis sp. nov., Bordetella flabilis sp. nov. and Bordetella sputigena sp. nov., isolated from human respiratory specimens, and reclassification of Achromobacter sediminum Zhang et al. 2014 as Verticia sediminum gen. nov., comb. nov. Int J Syst Evol Microbiol 2015; 65:3674–3682 [View Article][PubMed]
    [Google Scholar]
  27. Busse H-J, Stolz A. Achromobacter, Alcaligenes and related genera. In Dworkin M, Falkow S, Rosenberg E, Schleifer K-H, Stackebrandt E et al. (editors) The Prokaryotes, 3rd ed. vol. 5 Springer Science+Business Media; 2006 pp. 675–700 et al [CrossRef]
    [Google Scholar]
  28. Thiele OW, Schwinn G. The free lipids of Brucella melitensis and Bordetella pertussis. Eur J Biochem 1973; 34:333–344 [View Article][PubMed]
    [Google Scholar]
  29. Vandamme P, Heyndrickx M, Vancanneyt M, Hoste B, de Vos P et al. Bordetella trematum sp. nov., isolated from wounds and ear infections in humans, and reassessment of Alcaligenes denitrificans Rüger and Tan 1983. Int J Syst Bacteriol 1996; 46:849–858 [View Article][PubMed]
    [Google Scholar]
  30. von Wintzingerode F, Schattke A, Siddiqui RA, Rösick U, Göbel UB et al. Bordetella petrii sp. nov., isolated from an anaerobic bioreactor, and emended description of the genus Bordetella. Int J Syst Evol Microbiol 2001; 51:1257–1265 [View Article][PubMed]
    [Google Scholar]
  31. Sanden GN, Weyant RS. Genus III. Bordetella Moreno-López 1952. In Brenner DJ, Krieg NR, Staley JT. (editors) In Bergey’s Manual of Systematic Bacteriology, 2nd ed. The Proteobacteria, Part C, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria vol. 2 Berlin: Springer; 2005 pp 662–671 [CrossRef]
    [Google Scholar]
  32. Tazato N, Handa Y, Nishijima M, Kigawa R, Sano C et al. Novel environmental species isolated from the plaster wall surface of mural paintings in the Takamatsuzuka tumulus: Bordetella muralis sp. nov., Bordetella tumulicola sp. nov. and Bordetella tumbae sp. nov. Int J Syst Evol Microbiol 2015; 65:4830–4838 [View Article][PubMed]
    [Google Scholar]
  33. Zhang DC, Busse HJ, Wieser C, Liu HC, Zhou YG et al. Candidimonas bauzanensis sp. nov., isolated from soil, and emended description of the genus Candidimonas Vaz-Moreira et al. 2011. Int J Syst Evol Microbiol 2012; 62:2084–2089 [View Article][PubMed]
    [Google Scholar]
  34. Srinivasan S, Kim MK, Sathiyaraj G, Kim YJ, Yang DC. Pusillimonas ginsengisoli sp. nov., isolated from soil of a ginseng field. Int J Syst Evol Microbiol 2010; 60:1783–1787 [View Article][PubMed]
    [Google Scholar]
  35. Parte AC. LPSN–list of prokaryotic names with standing in nomenclature. Nucleic Acids Res 2014; 42:D613–D616 [View Article][PubMed]
    [Google Scholar]
  36. Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures 2016; Prokaryotic nomenclature up-to-date.. update: April 2016 www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.001674
Loading
/content/journal/ijsem/10.1099/ijsem.0.001674
Loading

Data & Media loading...

Supplements

Supplementary File 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error