Flavobacterium crassostreae sp. nov., isolated from Pacific oyster

Sungmi Choi; Su-Kyoung Shin; Eunji Kim; Hana Yi

doi:10.1099/ijsem.0.001728

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f Flavobacterium crassostreae sp. nov., isolated from Pacific oyster

Authors: Sungmi Choi¹ , Su-Kyoung Shin¹ , Eunji Kim¹ , Hana Yi^1,2
- VIEW AFFILIATIONS
- ¹ 1Department of Public Health Sciences, BK21PLUS Program in Embodiment: Health-Society Interaction, Graduate School, Korea University, Seoul, Republic of Korea ² 2School of Biosystem and Biomedical Science, Korea University, Seoul, Republic of Korea
*Correspondence: Hana Yi, [email protected]
First Published Online: 05 May 2017, International Journal of Systematic and Evolutionary Microbiology 67: 988-992, doi: 10.1099/ijsem.0.001728
Subject: New Taxa - Bacteroidetes

Received: 16/08/2016
Accepted: 09/12/2016
Cover date: 01/04/2017

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A yellow, rod-shaped, Gram-reaction-negative bacterial strain, designated LPB0076T, was isolated from a Pacific oyster. Results of 16S rRNA gene sequence analyses indicated that the strain represented a member of the genus Flavobacterium . It had the highest sequence similarity to the type strains of Flavobacterium frigidarium (97.6 %) and Flavobacterium omnivorum (97.0 %), and its similarities with all other species of the genus Flavobacterium were below 97.0 %. Its genome size (3.02 Mb), DNA G+C content (36.0 mol%), predominant cellular fatty acids (anteiso-C_15 : 0, iso-C_15 : 0 and C_16 : 1ω7c and/or C_17 : 1ω6c), and major polar lipid (phosphatidylethanolamine) were similar to those described previously for members of the genus Flavobacterium . In contrast, a number of phenotypic characteristics, including the inability to grow microaerophilically, absence of flexirubin-type pigments and gliding motility and differences in enzymatic reactions, clearly distinguished LPB0076T from other species of the genus Flavobacterium . The polyphasic data presented in this study indicate that this isolate should be classified as representing a novel species of the genus Flavobacterium . The name Flavobacterium crassostreae sp. nov. is therefore proposed for the isolate, with the type strain being LPB0076T (=KACC 18706T=JCM 31219T).

The GenBank accession numbers for the 16S rRNA gene sequence and the whole-genome sequence of strain LPB0076T are KU057346 and CP017688, respectively.
One supplementary table and one supplementary figure are available with the online Supplementary Material.

Keyword(s): Bacteriodetes, Flavobacterium, Flavobacterium crassostreae

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