Flavobacterium crassostreae sp. nov., isolated from Pacific oyster

Sungmi Choi; Su-Kyoung Shin; Eunji Kim; Hana Yi

doi:10.1099/ijsem.0.001728

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Flavobacterium crassostreae sp. nov., isolated from Pacific oyster

Authors: Sungmi Choi¹, Su-Kyoung Shin¹, Eunji Kim¹, Hana Yi^1,2
- VIEW AFFILIATIONS
- ¹ 1Department of Public Health Sciences, BK21PLUS Program in Embodiment: Health-Society Interaction, Graduate School, Korea University, Seoul, Republic of Korea ² 2School of Biosystem and Biomedical Science, Korea University, Seoul, Republic of Korea
*Correspondence: Hana Yi, hanayi@gmail.com
First Published Online: 05 May 2017, International Journal of Systematic and Evolutionary Microbiology 67: 988-992, doi: 10.1099/ijsem.0.001728
Subject: New Taxa - Bacteroidetes

Received: 16/08/2016
Accepted: 09/12/2016
Cover date: 01/04/2017

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A yellow, rod-shaped, Gram-reaction-negative bacterial strain, designated LPB0076T, was isolated from a Pacific oyster. Results of 16S rRNA gene sequence analyses indicated that the strain represented a member of the genus Flavobacterium . It had the highest sequence similarity to the type strains of Flavobacterium frigidarium (97.6 %) and Flavobacterium omnivorum (97.0 %), and its similarities with all other species of the genus Flavobacterium were below 97.0 %. Its genome size (3.02 Mb), DNA G+C content (36.0 mol%), predominant cellular fatty acids (anteiso-C_15 : 0, iso-C_15 : 0 and C_16 : 1ω7c and/or C_17 : 1ω6c), and major polar lipid (phosphatidylethanolamine) were similar to those described previously for members of the genus Flavobacterium . In contrast, a number of phenotypic characteristics, including the inability to grow microaerophilically, absence of flexirubin-type pigments and gliding motility and differences in enzymatic reactions, clearly distinguished LPB0076T from other species of the genus Flavobacterium . The polyphasic data presented in this study indicate that this isolate should be classified as representing a novel species of the genus Flavobacterium . The name Flavobacterium crassostreae sp. nov. is therefore proposed for the isolate, with the type strain being LPB0076T (=KACC 18706T=JCM 31219T).

The GenBank accession numbers for the 16S rRNA gene sequence and the whole-genome sequence of strain LPB0076T are KU057346 and CP017688, respectively.
One supplementary table and one supplementary figure are available with the online Supplementary Material.

Keyword(s): Bacteriodetes, Flavobacterium, Flavobacterium crassostreae

1. Bergey DH, Harrison FC, Breed RS, Hammer BW, Huntoon FM et al.(editors) Genus II. Flavobacterium gen. nov. InBergey's Manual of Determinative Bacteriology1st edBaltimore, MDWilliams and Wilkins 1923;pp.97–117
2. Bernardet JF, Segers P, Vancanneyt M, Berthe F, Kersters K et al. Cutting a gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int J Syst Evol Microbiol 1996;46:128–148 [CrossRef]
3. Bernardet JF, Bowman JP. Genus I. Flavobacterium. In Krieg NR, Staley JT, Brown DR, Hedlund BP, Paster BJ.et al.editorsBergey's Manual of Systematic Bacteriology2nd edvol. 4:New YorkSpringer 2010;pp.112–154
4. Shin SK, Kim E, Choi S, Yi H. Cochleicola gelatinilyticus gen. nov., sp. nov., isolated from a marine gastropod, Reichia luteostoma. J Microbiol Biotechnol 2016;26:1439–1445 [CrossRef][PubMed]
5. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M et al. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 2012;62:716–721 [CrossRef][PubMed]
6. Jeon YS, Lee K, Park SC, Kim BS, Cho YJ et al. EzEditor: a versatile sequence alignment editor for both rRNA- and protein-coding genes. Int J Syst Evol Microbiol 2014;64:689–691 [CrossRef][PubMed]
7. Tamura K, Peterson D, Peterson N, Stecher G, Nei M et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011;28:2731–2739 [CrossRef][PubMed]
8. Ronquist F, Huelsenbeck JP. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003;19:1572–1574 [CrossRef][PubMed]
9. Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P et al. DNA–DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 2007;57:81–91 [CrossRef][PubMed]
10. Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 2009;106:19126–19131 [CrossRef][PubMed]
11. Bernardet JF, Nakagawa Y, Holmes B. Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 2002;52:1049–1070 [CrossRef][PubMed]
12. Smibert RM, Krieg NR. Phenotypic characterization. In Gerhardt P, Murray RGE, Wood WA, Kreig NR.(editors)Methods for General and Molecular BacteriologyWashington, DCAmerican Society for Microbiology 1994;pp.607–654
13. Shin SK, Goo H, Cho YJ, Kwon S, Yong D et al. Non-contiguous finished genome sequence and description of the gliding bacterium Flavobacterium seoulense sp. nov. Stand Genomic Sci 2014;9:34 [CrossRef][PubMed]
14. Kim M, Oh HS, Park SC, Chun J. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol 2014;64:346–351 [CrossRef][PubMed]

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