1887

Abstract

Six Gram-negative, non-motile, non-spore-forming, non-pigmented, oxidase- and catalase-positive bacterial strains were deposited in 1972, in the Collection of the Institut Pasteur (CIP), Paris, France. The strains, previously identified as members of the genus on the basis of their phenotypic and biochemical characteristics, were placed within the genus based on the results from omparative 16S rRNA gene sequence studies. Their closest phylogenetic relatives were CIP 110993, CIP 82.27 and CIP 110018. The DNA G+C contents were between 42.1 and 42.7 mol%. The predominant fatty acids were Cω9, C, C 3-OH, and C. Average nucleotide identity between the six strains and their closest phylogenetic relatives, as well as their phenotypic characteristics, supported the assignment of these strains to two novel species within the genus . The proposed names for these strains are sp. nov., for which the type strain is A1019 (=CIP 110853=CECT 9184), and sp. nov., for which the type strain is 1232 (=CIP110854=CECT 9185).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.002065
2017-09-01
2024-03-28
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/67/9/3192.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.002065&mimeType=html&fmt=ahah

References

  1. Juni E, Heym GA. Psychrobacter immobilis gen. nov., sp. nov.: genospecies composed of Gram-negative, aerobic, oxidase-positive coccobacilli. Int J Syst Bacteriol 1986; 36:388–391 [View Article]
    [Google Scholar]
  2. Bowman JP, Mccammon SA, Brown MV, Nichols DS, Mcmeekin TA. Diversity and association of psychrophilic bacteria in antarctic sea ice. Appl Environ Microbiol 1997; 63:3068–3078[PubMed]
    [Google Scholar]
  3. Wirth SE, Ayala-del-Río HL, Cole JA, Kohlerschmidt DJ, Musser KA et al. Psychrobacter sanguinis sp. nov., recovered from four clinical specimens over a 4-year period. Int J Syst Evol Microbiol 2012; 62:49–54 [View Article][PubMed]
    [Google Scholar]
  4. Deschaght P, Janssens M, Vaneechoutte M, Wauters G. Psychrobacter isolates of human origin, other than Psychrobacter phenylpyruvicus, are predominantly Psychrobacter faecalis and Psychrobacter pulmonis, with emended description of P. faecalis. Int J Syst Evol Microbiol 2012; 62:671–674 [View Article][PubMed]
    [Google Scholar]
  5. Gini GA. Ocular infection caused by Psychrobacter immobilis acquired in the hospital. J Clin Microbiol 1990; 28:400–401[PubMed]
    [Google Scholar]
  6. Guttigoli A, Zaman MM. Bacteremia and possible endocarditis caused by Moraxella phenylpyruvica. South Med J 2000; 93:708–709 [View Article][PubMed]
    [Google Scholar]
  7. Lloyd-Puryear M, Wallace D, Baldwin T, Hollis DG. Meningitis caused by Psychrobacter immobilis in an infant. J Clin Microbiol 1991; 29:2041–2042[PubMed]
    [Google Scholar]
  8. Le Guern R, Wallet F, Vega E, Courcol RJ, Loïez C. Psychrobacter sanguinis: an unusual bacterium for nosocomial meningitis. J Clin Microbiol 2014; 52:3475–3477 [View Article][PubMed]
    [Google Scholar]
  9. Ortiz-Alcántara JM, Segura-Candelas JM, Garcés-Ayala F, Gonzalez-Durán E, Rodríguez-Castillo A et al. Fatal Psychrobacter sp. infection in a pediatric patient with meningitis identified by metagenomic next-generation sequencing in cerebrospinal fluid. Arch Microbiol 2016; 198:129–135 [View Article][PubMed]
    [Google Scholar]
  10. Clermont D, Diard S, Bouchier C, Vivier C, Bimet F et al. Microbacterium binotii sp. nov., isolated from human blood. Int J Syst Evol Microbiol 2009; 59:1016–1022 [View Article][PubMed]
    [Google Scholar]
  11. Böttger EC. Rapid determination of bacterial ribosomal RNA sequences by direct sequencing of enzymatically amplified DNA. FEMS Microbiol Lett 1989; 53:171–176[PubMed] [CrossRef]
    [Google Scholar]
  12. Moretti S, Wilm A, Higgins DG, Xenarios I, Notredame C. R-Coffee: a web server for accurately aligning noncoding RNA sequences. Nucleic Acids Res 2008; 36:W10–W13 [View Article][PubMed]
    [Google Scholar]
  13. Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol 2015; 32:268–274 [View Article][PubMed]
    [Google Scholar]
  14. Rosselló-Móra R, Amann R. Past and future species definitions for bacteria and archaea. Syst Appl Microbiol 2015; 38:209–216 [View Article][PubMed]
    [Google Scholar]
  15. Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 2009; 106:19126–19131 [View Article][PubMed]
    [Google Scholar]
  16. Criscuolo A, Brisse S. AlienTrimmer: a tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads. Genomics 2013; 102:500–506 [View Article][PubMed]
    [Google Scholar]
  17. Liu Y, Schröder J, Schmidt B. Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data. Bioinformatics 2013; 29:308–315 [View Article][PubMed]
    [Google Scholar]
  18. Magoč T, Salzberg SL. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 2011; 27:2957–2963 [View Article][PubMed]
    [Google Scholar]
  19. Crusoe MR, Alameldin HF, Awad S, Boucher E, Caldwell A et al. The khmer software package: enabling efficient nucleotide sequence analysis [version 1; referees: 2 approved, 1 approved with reservations]. F1000Research 2015; 4:900
    [Google Scholar]
  20. Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 2012; 19:455–477 [View Article][PubMed]
    [Google Scholar]
  21. Richter M, Rosselló-Móra R, Oliver Glöckner F, Peplies J. JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison. Bioinformatics 2016; 32:929–931 [View Article][PubMed]
    [Google Scholar]
  22. Sasser M. Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 1990; 20:16
    [Google Scholar]
  23. MIDI Sherlock Microbial Identification System, Operating Manual, Version 3.0 Newark, DE: MIDI, Inc; 1999
    [Google Scholar]
  24. Bowman JP. The genus Psychrobacter. In Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E et al. (editors) The Prokaryotes: A Handbook on the Biology of Bacteria, 3rd ed. vol. 3 New York: Springer; 2006 pp. 920–930
    [Google Scholar]
  25. Bowman JP, Cavanagh J, Austin JJ, Sanderson K. Novel Psychrobacter species from Antarctic ornithogenic soils. Int J Syst Bacteriol 1996; 46:841–848 [View Article][PubMed]
    [Google Scholar]
  26. Yassin AF, Busse HJ. Psychrobacter lutiphocae sp. nov., isolated from the faeces of a seal. Int J Syst Evol Microbiol 2009; 59:2049–2053 [View Article][PubMed]
    [Google Scholar]
  27. Jukes TH, Cantor CR. Evolution of protein molecules. In Munro HN. (editor) Mammalian Protein Metabolism New York: Academic Press; 1969 pp. 21–132 [CrossRef]
    [Google Scholar]
  28. Lefort V, Desper R, Gascuel O. FastME 2.0: a comprehensive, accurate, and fast distance-based phylogeny inference program. Mol Biol Evol 2015; 32:2798–2800 [View Article][PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.002065
Loading
/content/journal/ijsem/10.1099/ijsem.0.002065
Loading

Data & Media loading...

Supplements

Supplementary File 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error