Staphylococcus caeli sp. nov., isolated from air sampling in an industrial rabbit holding

References

1. Rosenbach FJ. Mikroorganismen bei den Wundinfections-Krankheiten des Menschen Wiesbaden, Germany; 1884
2. Götz F, Bannerman T, Schleifer KH. The Genera Staphylococcus and Macrococcus. In Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E et al. (editors) The Prokaryotes vol. 4 Bacteria:Firmicutes, Cyanobacteria New York, NY: Springer US; 2006 pp. 5–75
   [Google Scholar]
3. Agnoletti F, Mazzolini E, Bacchin C, Bano L, Berto G et al. First reporting of methicillin-resistant Staphylococcus aureus (MRSA) ST398 in an industrial rabbit holding and in farm-related people. Vet Microbiol 2014; 170:172–177 [View Article][PubMed]
   [Google Scholar]
4. Quail MA, Kozarewa I, Smith F, Scally A, Stephens PJ et al. A large genome center's improvements to the Illumina sequencing system. Nat Methods 2008; 5:1005–1010 [View Article][PubMed]
   [Google Scholar]
5. Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 2008; 18:821–829 [View Article][PubMed]
   [Google Scholar]
6. Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 2016; 33:1870–1874 [View Article][PubMed]
   [Google Scholar]
7. Ghebremedhin B, Layer F, König W, König B. Genetic classification and distinguishing of Staphylococcus species based on different partial gap, 16S rRNA, hsp60, rpoB, sodA, and tuf gene sequences. J Clin Microbiol 2008; 46:1019–1025 [View Article][PubMed]
   [Google Scholar]
8. Shah MM, Iihara H, Noda M, Song SX, Nhung PH et al. dnaJ gene sequence-based assay for species identification and phylogenetic grouping in the genus Staphylococcus. Int J Syst Evol Microbiol 2007; 57:25–30 [View Article][PubMed]
   [Google Scholar]
9. Hwang SM, Kim MS, Park KU, Song J, Kim EC. Tuf gene sequence analysis has greater discriminatory power than 16S rRNA sequence analysis in identification of clinical isolates of coagulase-negative staphylococci. J Clin Microbiol 2011; 49:4142–4149 [View Article][PubMed]
   [Google Scholar]
10. Lee I, Ouk Kim Y, Park SC, Chun J. OrthoANI: an improved algorithm and software for calculating average nucleotide identity. Int J Syst Evol Microbiol 2016; 66:1100–1103 [View Article][PubMed]
    [Google Scholar]
11. Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article][PubMed]
    [Google Scholar]
12. Chun J, Oren A, Ventosa A, Christensen H, Arahal DR et al. Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int J Syst Evol Microbiol 2018; 68:461–466 [View Article][PubMed]
    [Google Scholar]
13. Ankenbrand MJ, Keller A. bcgTree: automatized phylogenetic tree building from bacterial core genomes. Genome 2016; 59:783–791 [View Article][PubMed]
    [Google Scholar]
14. Sivadon V, Rottman M, Quincampoix JC, Avettand V, Chaverot S et al. Use of sodA. sequencing for the identification of clinical isolates of coagulase-negative staphylococci. Clin Microbiol Infect 2004; 10:939–942 [View Article][PubMed]
    [Google Scholar]
15. Munoz R, Yarza P, Ludwig W, Euzéby J, Amann R et al. Release LTPs104 of the All-Species Living Tree. Syst Appl Microbiol 2011; 34:169–170 [View Article][PubMed]
    [Google Scholar]
16. Hájek V, Meugnier H, Bes M, Brun Y, Fiedler F et al. Staphylococcus saprophyticus subsp. bovis subsp. nov., isolated from bovine nostrils. Int J Syst Bacteriol 1996; 46:792–796 [View Article][PubMed]
    [Google Scholar]
17. Pantůček R, Sedláček I, Indráková A, Vrbovská V, Mašlaňová I et al. Staphylococcus edaphicus sp. nov., isolated in Antarctica, harbours mecC gene and genomic islands with suspected role in adaptation to extreme environment. Appl Environ Microbiol 2017 [View Article][PubMed]
    [Google Scholar]