1887

Abstract

Two Gram-stain-negative, rod-shaped bacteria, designated as strains KJ10-1 and KJ40-1, were isolated from marine brown algae. Both strains were catalase-positive, oxidase-positive, and facultative aerobic. Strain KJ10-1 exhibited optimal growth at 25 °C, pH 7.0, and 3 % NaCl, whereas strain KJ40-1 showed optimal growth at 25 °C, pH 7.0, and 2 % NaCl. The respiratory quinones of strain KJ10-1 were ubiquinone-8, ubiquinone-7, menaquinone-7, and methylated menaquinone-7, while the respiratory quinone of strain KJ40-1 was only ubiquinone-8. As major fatty acids, strain KJ10-1 contained C, C ω8, iso-C, and summed feature 3 (C 7 and/or C 6) and strain KJ40-1 contained C and summed features 3 and 8 (C 7 and/or C 6). The major polar lipids in strain KJ10-1 were phosphatidylethanolamine, phosphatidylglycerol, and an unidentified aminolipid, whereas those in strain KJ40-1 were phosphatidylethanolamine, phosphatidylglycerol, and diphosphatidylglycerol. The DNA G+C contents of strains KJ10-1 and KJ40-1 were 42.1 and 40.8 mol%, respectively. Based on 16S rRNA gene sequences, strains KJ10-1 and KJ40-1 exhibited the closest relatedness to MMS16-UL250 (98.6 %) and S-1 (95.4 %), respectively. Phylogenetic analyses, based on both 16S rRNA and 92 housekeeping genes, showed that the strains formed distinct phylogenic lineages within the genera and . Digital DNA–DNA hybridization and orthologous average nucleotide identity values between strain KJ10-1 and other species, as well as between strain KJ40-1 and other species, were below the thresholds commonly accepted for prokaryotic species delineation. Based on the phenotypic, chemotaxonomic, and phylogenetic data, strains KJ10-1 and KJ40-1 represent novel species of the genera and , respectively, for which the names sp. nov. and sp. nov. are proposed, respectively. The type strains of and are KJ10-1 (=KACC 22589=JCM 35409) and KJ40-1 (=KACC 22588=JCM 35410), respectively.

Funding
This study was supported by the:
  • National Institute of Biological Resources (KR)
    • Principle Award Recipient: CheOk Jeon
  • Chung-Ang University
    • Principle Award Recipient: JaejoonJung
  • This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.006378
2024-05-10
2024-05-20
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/74/5/ijsem006378.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.006378&mimeType=html&fmt=ahah

References

  1. MacDonell MT, Colwell RR. Phylogeny of the Vibrionaceae, and recommendation for two new genera, Listonella and Shewanella. Syst Appl Microbiol 1985; 6:171–182 [View Article]
    [Google Scholar]
  2. Liu G-H, Yang S, Narsing Rao MP, Han S, Xie C-J et al. Isolation and genomics of ten novel Shewanella species from mangrove wetland. Int J Syst Evol Microbiol 2023; 73:005929 [View Article] [PubMed]
    [Google Scholar]
  3. Altun S, Duman M, Ay H, Saticioglu IB. Shewanella oncorhynchi sp. nov., a novel member of the genus Shewanella, isolated from Rainbow Trout (Oncorhynchus mykiss). Int J Syst Evol Microbiol 2022; 72:005460 [View Article]
    [Google Scholar]
  4. Martín-Rodríguez AJ, Thorell K, Joffré E, Jensie-Markopoulos S, Moore ERB et al. Shewanella septentrionalis sp. nov. and Shewanella holmiensis sp. nov., isolated from Baltic Sea water and sediments. Int J Syst Evol Microbiol 2023; 73:005767 [View Article]
    [Google Scholar]
  5. Park HY, Jeon CO. Shewanella aestuarii sp. nov., a marine bacterium isolated from a tidal flat. Int J Syst Evol Microbiol 2013; 63:4683–4690 [View Article] [PubMed]
    [Google Scholar]
  6. Maltman C, Kuzyk SB, Kyndt JA, Lengyel G, Yurkov V. Shewanella metallivivens sp. nov., a deep-sea hydrothermal vent tube worm endobiont capable of dissimilatory anaerobic metalloid oxyanion reduction. Int J Syst Evol Microbiol 2023; 73:5980 [View Article] [PubMed]
    [Google Scholar]
  7. Yun B-R, Park S, Kim M-K, Park J, Kim SB. Shewanella saliphila sp. nov., Shewanella ulleungensis sp. nov. and Shewanella litoralis sp. nov., isolated from coastal seawater. Int J Syst Evol Microbiol 2018; 68:2960–2966 [View Article] [PubMed]
    [Google Scholar]
  8. Wang MQ, Sun L. Shewanella inventionis sp. nov., isolated from deep-sea sediment. Int J Syst Evol Microbiol 2016; 66:4947–4953 [View Article] [PubMed]
    [Google Scholar]
  9. Kim J-Y, Yoo H-S, Lee D-H, Park S-H, Kim Y-J et al. Shewanella algicola sp. nov., a marine bacterium isolated from brown algae. Int J Syst Evol Microbiol 2016; 66:2218–2224 [View Article] [PubMed]
    [Google Scholar]
  10. Thompson FL, Iida T, Swings J. Biodiversity of vibrios. Microbiol Mol Biol Rev 2004; 68:403–431 [View Article] [PubMed]
    [Google Scholar]
  11. Zhang P, Wang X, Liu R, Zhu X, Zhao W et al. Vibrio amylolyticus sp. nov. and Vibrio gelatinilyticus sp. nov., two marine bacteria isolated from surface seawater of Qingdao. Int J Syst Evol Microbiol 2023; 73:005674 [View Article] [PubMed]
    [Google Scholar]
  12. Grant TA, Jayakumar JM, López-Pérez M, Almagro-Moreno S. Vibrio floridensis sp. nov., a novel species closely related to the human pathogen Vibrio vulnificus isolated from a cyanobacterial bloom. Int J Syst Evol Microbiol 2023; 73:005675 [View Article] [PubMed]
    [Google Scholar]
  13. Guo R, Yuan Y, Liu R, Hong W, Zhou Y et al. Vibrio paucivorans sp. nov. and Vibrio qingdaonensis sp. nov., two marine bacteria. Int J Syst Evol Microbiol 2023; 73:005822 [View Article]
    [Google Scholar]
  14. Yu L, Wei S, Zhou Z, Shao Z. Vibrio intestinalis sp. nov., isolated from intestine of seahorse. Int J Syst Evol Microbiol 2023; 73:005932 [View Article] [PubMed]
    [Google Scholar]
  15. Lee GE, Im WT, Park JS. Vibrio hannami sp. nov., isolated from seawater. Curr Microbiol 2018; 75:278–283 [View Article] [PubMed]
    [Google Scholar]
  16. Yumoto I, Iwata H, Sawabe T, Ueno K, Ichise N et al. Characterization of a facultatively psychrophilic bacterium, Vibrio rumoiensis sp. nov., that exhibits high catalase activity. Appl Environ Microbiol 1999; 65:67–72 [View Article] [PubMed]
    [Google Scholar]
  17. Wang H, Liu J, Wang Y, Zhang XH. Vibrio marisflavi sp. nov., isolated from seawater. Int J Syst Evol Microbiol 2011; 61:568–573 [View Article] [PubMed]
    [Google Scholar]
  18. Kristyanto S, Kim JM, Han DM. Hoeflea algicola sp. nov. and Hoeflea ulvae sp. nov isolated from phycosphere of marine algae. Int J Syst Evol Microbiol 2023; 73:006058
    [Google Scholar]
  19. Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article] [PubMed]
    [Google Scholar]
  20. Nawrocki EP, Eddy SR. Infernal 1.1: 100-fold faster RNA homology searches. Bioinformatics 2013; 29:2933–2935 [View Article] [PubMed]
    [Google Scholar]
  21. Tamura K, Stecher G, Kumar S. MEGA11: Molecular Evolutionary Genetics Analysis version 11. Mol Biol Evol 2021; 38:3022–3027 [View Article] [PubMed]
    [Google Scholar]
  22. Kolmogorov M, Yuan J, Lin Y, Pevzner PA. Assembly of long, error-prone reads using repeat graphs. Nat Biotechnol 2019; 37:540–546 [View Article] [PubMed]
    [Google Scholar]
  23. Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res 2015; 25:1043–1055 [View Article] [PubMed]
    [Google Scholar]
  24. Na S-I, Kim YO, Yoon S-H, Ha S, Baek I et al. UBCG: up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction. J Microbiol 2018; 56:280–285 [View Article]
    [Google Scholar]
  25. Lee I, Ouk Kim Y, Park SC, Chun J. OrthoANI: an improved algorithm and software for calculating average nucleotide identity. Int J Syst Evol Microbiol 2016; 66:1100–1103 [View Article] [PubMed]
    [Google Scholar]
  26. Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article] [PubMed]
    [Google Scholar]
  27. Chun J, Oren A, Ventosa A, Christensen H, Arahal DR et al. Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int J Syst Evol Microbiol 2018; 68:461–466 [View Article] [PubMed]
    [Google Scholar]
  28. Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP et al. NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res 2016; 44:6614–6624 [View Article] [PubMed]
    [Google Scholar]
  29. Zhang H, Yohe T, Huang L, Entwistle S, Wu P et al. dbCAN2: a meta server for automated carbohydrate-active enzyme annotation. Nucleic Acids Res 2018; 46:W95–W101 [View Article] [PubMed]
    [Google Scholar]
  30. Wang D, Wang J, Zeng R, Wu J, Michael SV et al. The degradation activities for three seaweed polysaccharides of Shewanella sp. WPAGA9 isolated from deep-sea sediments. J Basic Microbiol 2021; 61:406–418 [View Article] [PubMed]
    [Google Scholar]
  31. Yu S, Yun EJ, Kim DH, Park SY, Kim KH. Dual agarolytic pathways in a marine bacterium, Vibrio sp. strain EJY3: molecular and enzymatic verification. Appl Environ Microbiol 2020; 86:e02724-19 [View Article] [PubMed]
    [Google Scholar]
  32. Gomori G. Preparation of buffers for use in enzyme studies. In Colowick SP, Kaplan NO. eds Method in Enzymology New York: Academic Press; 1955 pp 138–146
    [Google Scholar]
  33. Smibert RM, Krieg NR. Methods for general and molecular bacteriology. In Gerhardt P. eds Phenotypic Characterization Washington, DC: American Society for Microbiology; 1994 pp 607–654
    [Google Scholar]
  34. Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
    [Google Scholar]
  35. Sasser M. Identification of bacteria by gas chromatography of cellular fatty acids. In MIDI Technical Note vol 101 Newark, DE: MIDI Inc; 1990
    [Google Scholar]
  36. Minnikin DE, Patel PV, Alshamaony L, Goodfellow M. Polar lipid composition in the classification of nocardia and related bacteria. Int J Syst Bacteriol 1977; 27:104–117 [View Article]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.006378
Loading
/content/journal/ijsem/10.1099/ijsem.0.006378
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error