1887

Abstract

The small multidrug resistance (SMR) protein EmrE resides in the inner membrane and provides resistance against a wide range of antiseptic quaternary cationic compounds (QCCs) for the Gram-negative bacterium . We have reported previously that overexpression of the gene results in the reduction of pH and osmotic tolerance, likely through EmrE-mediated biological QCC-based osmoprotectant efflux, indicating a potential physiological role for EmrE beyond providing drug resistance. EmrE is the most studied member of SMR transporter family; however, it is not known how the substrates translocated by EmrE move across the periplasm and through the outer membrane (OM). We have shown that the OM protein OmpW participates in the EmrE-mediated substrate efflux process and provided a hypothesis for the present study that additional OM and periplasmic proteins participate in the translocation process. To test the hypothesis, we conducted alkaline pH-based growth phenotype screens under overexpression conditions. This screen identified 10 additional genes that appear to contribute to the EmrE-coupled osmoprotectant efflux: , , , , , , , , and . Further screening of these genes using a hyperosmotic growth phenotype assay in the presence and the absence of the osmoprotectant glycine betaine identified and two periplasmic protein genes, and , are mechanistically linked to EmrE.

Funding
This study was supported by the:
  • NSERC
    • Principle Award Recipient: RaymondJ Turner
  • NSERC
    • Principle Award Recipient: DeniceC. Bay
Loading

Article metrics loading...

/content/journal/micro/10.1099/mic.0.001287
2022-12-19
2024-05-08
Loading full text...

Full text loading...

/deliver/fulltext/micro/168/12/mic001287.html?itemId=/content/journal/micro/10.1099/mic.0.001287&mimeType=html&fmt=ahah

References

  1. McDonnell G, Russell AD. Antiseptics and disinfectants: activity, action, and resistance. Clin Microbiol Rev 1999; 12:147–179 [View Article] [PubMed]
    [Google Scholar]
  2. Gerba CP. Quaternary ammonium biocides: efficacy in application. Appl Environ Microbiol 2015; 81:464–469 [View Article] [PubMed]
    [Google Scholar]
  3. Lewis K. Multidrug resistance pumps in bacteria: variations on a theme. Trends Biochem Sci 1994; 19:119–123 [View Article] [PubMed]
    [Google Scholar]
  4. Nikaido H, Pagès JM. Broad-specificity efflux pumps and their role in multidrug resistance of gram-negative bacteria. FEMS Microbiol Rev 2012; 36:340–363 [View Article]
    [Google Scholar]
  5. Pao SS, Paulsen IT, Saier MH. Major facilitator superfamily. Microbiol Mol Biol Rev 1998; 62:1–34 [View Article] [PubMed]
    [Google Scholar]
  6. Saier MH, Tam R, Reizer A, Reizer J. Two novel families of bacterial membrane proteins concerned with nodulation, cell division and transport. Mol Microbiol 1994; 11:841–847 [View Article] [PubMed]
    [Google Scholar]
  7. Kuroda T, Tsuchiya T. Multidrug efflux transporters in the MATE family. Biochim Biophys Acta 2009; 1794:763–768 [View Article] [PubMed]
    [Google Scholar]
  8. Jack DL, Yang NM, Saier MH. The drug/metabolite transporter superfamily. Eur J Biochem 2001; 268:3620–3639 [View Article] [PubMed]
    [Google Scholar]
  9. Hassan KA, Liu Q, Henderson PJF, Paulsen IT. Homologs of the Acinetobacter baumannii AceI transporter represent a new family of bacterial multidrug efflux systems. mBio 2015; 6:e01982-14 [View Article]
    [Google Scholar]
  10. Paulsen IT, Skurray RA, Tam R, Saier MH, Turner RJ et al. The SMR family: a novel family of multidrug efflux proteins involved with the efflux of lipophilic drugs. Mol Microbiol 1996; 19:1167–1175 [View Article]
    [Google Scholar]
  11. Bay DC, Rommens KL, Turner RJ. Small multidrug resistance proteins: a multidrug transporter family that continues to grow. Biochim Biophys Acta 2008; 1778:1814–1838 [View Article] [PubMed]
    [Google Scholar]
  12. Purewal AS. Nucleotide sequence of the ethidium efflux gene from Escherichia coli. FEMS Microbiol Lett 1991; 82:229–232 [View Article]
    [Google Scholar]
  13. Morimyo M, Hongo E, Hama-Inaba H, Machida I. Cloning and characterization of the mvrC gene of Escherichia coli K-12 which confers resistance against methyl viologen toxicity. Nucleic Acids Res 1992; 20:3159–3165 [View Article]
    [Google Scholar]
  14. Schuldiner S. EmrE, a model for studying evolution and mechanism of ion-coupled transporters. Biochim Biophys Acta 2009; 1794:748–762 [View Article] [PubMed]
    [Google Scholar]
  15. Yerushalmi H, Schuldiner S. A common binding site for substrates and protons in EmrE, an ion-coupled multidrug transporter. FEBS Lett 2000; 476:93–97 [View Article] [PubMed]
    [Google Scholar]
  16. Muth TR, Schuldiner S. A membrane-embedded glutamate is required for ligand binding to the multidrug transporter EmrE. EMBO J 2000; 19:234–240 [View Article]
    [Google Scholar]
  17. Saier MH, Paulsen IT. Phylogeny of multidrug transporters. Semin Cell Dev Biol 2001; 12:205–213 [View Article] [PubMed]
    [Google Scholar]
  18. Alvarez-Ortega C, Olivares J, Martínez JL. RND multidrug efflux pumps: what are they good for?. Front Microbiol 2013; 4:7 [View Article] [PubMed]
    [Google Scholar]
  19. Krulwich TA, Lewinson O, Padan E, Bibi E. Do physiological roles foster persistence of drug/multidrug-efflux transporters? A case study. Nat Rev Microbiol 2005; 3:566–572 [View Article]
    [Google Scholar]
  20. Bay DC, Turner RJ. Small multidrug resistance protein EmrE reduces host pH and osmotic tolerance to metabolic quaternary cation osmoprotectants. J Bacteriol 2012; 194:5941–5948 [View Article] [PubMed]
    [Google Scholar]
  21. Sleator RD, Hill C. Bacterial osmoadaptation: the role of osmolytes in bacterial stress and virulence. FEMS Microbiol Rev 2002; 26:49–71 [View Article]
    [Google Scholar]
  22. Csonka LN. Physiological and genetic responses of bacteria to osmotic stress. Microbiol Rev 1989; 53:121–147 [View Article] [PubMed]
    [Google Scholar]
  23. Zgurskaya HI. Multicomponent drug efflux complexes: architecture and mechanism of assembly. Future Microbiol 2009; 4:919–932 [View Article] [PubMed]
    [Google Scholar]
  24. Beketskaia MS, Bay DC, Turner RJ. Outer membrane protein OmpW participates with small multidrug resistance protein member EmrE in quaternary cationic compound efflux. J Bacteriol 2014; 196:1908–1914 [View Article] [PubMed]
    [Google Scholar]
  25. Sulavik MC, Houseweart C, Cramer C, Jiwani N, Murgolo N et al. Antibiotic susceptibility profiles of Escherichia coli strains lacking multidrug efflux pump genes. Antimicrob Agents Chemother 2001; 45:1126–1136 [View Article]
    [Google Scholar]
  26. Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y et al. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2006; 2:msb4100050 [View Article]
    [Google Scholar]
  27. Winstone TL, Duncalf KA, Turner RJ. Optimization of expression and the purification by organic extraction of the integral membrane protein EmrE. Protein Expr Purif 2002; 26:111–121 [View Article] [PubMed]
    [Google Scholar]
  28. Molloy MP, Herbert BR, Slade MB, Rabilloud T, Nouwens AS et al. Proteomic analysis of the Escherichia coli outer membrane. Eur J Biochem 2000; 267:2871–2881 [View Article]
    [Google Scholar]
  29. Weiner JH, Li L. Proteome of the Escherichia coli envelope and technological challenges in membrane proteome analysis. Biochim Biophys Acta 2008; 1778:1698–1713 [View Article]
    [Google Scholar]
  30. Tal N, Schuldiner S. A coordinated network of transporters with overlapping specificities provides a robust survival strategy. Proc Natl Acad Sci USA 2009; 106:9051–9056 [View Article]
    [Google Scholar]
  31. Shahjee HM, Banerjee K, Ahmad F. Comparative analysis of naturally occurring L-amino acid osmolytes and their D-isomers on protection of Escherichia coli against environmental stresses. J Biosci 2002; 27:515–520 [View Article]
    [Google Scholar]
  32. Albrecht R, Zeth K, Söding J, Lupas A, Linke D. Expression, crystallization and preliminary X-ray crystallographic studies of the outer membrane protein OmpW from Escherichia coli. Acta Crystallogr F Struct Biol Cryst Commun 2006; 62:415–418 [View Article]
    [Google Scholar]
  33. Hong H, Patel DR, Tamm LK, van den Berg B. The outer membrane protein OmpW forms an eight-stranded beta-barrel with a hydrophobic channel. J Biol Chem 2006; 281:7568–7577 [View Article] [PubMed]
    [Google Scholar]
  34. Korotkov K, Pardon E, Steyaert J, Hol WG. Crystal structure of the N-terminal domain of the secretin GspD from ETEC determined with the assistance of a nanobody. Structure 2009; 17:255–265 [View Article]
    [Google Scholar]
  35. Peleg A, Shifrin Y, Ilan O, Nadler-Yona C, Nov S et al. Identification of an Escherichia coli operon required for formation of the O-antigen capsule. J Bacteriol 2005; 187:5259–5266 [View Article]
    [Google Scholar]
  36. Sun D, Zhang X, Wang L, Prudhomme M, Xie Z et al. Transforming DNA uptake gene orthologs do not mediate spontaneous plasmid transformation in Escherichia coli. J Bacteriol 2009; 191:713–719 [View Article]
    [Google Scholar]
  37. Paul S, Alegre KO, Holdsworth SR, Rice M, Brown JA et al. A single-component multidrug transporter of the major facilitator superfamily is part of a network that protects Escherichia coli from bile salt stress. Mol Microbiol 2014; 92:872–884 [View Article]
    [Google Scholar]
  38. Roesser M, Müller V. Osmoadaptation in bacteria and archaea: common principles and differences. Environ Microbiol 2001; 3:743–754 [View Article] [PubMed]
    [Google Scholar]
  39. Dattananda CS, Gowrishankar J. Osmoregulation in Escherichia coli: complementation analysis and gene-protein relationships in the proU locus. J Bacteriol 1989; 171:1915–1922 [View Article]
    [Google Scholar]
  40. Checroun C, Gutierrez C. Sigma(s)-dependent regulation of yehZYXW, which encodes a putative osmoprotectant ABC transporter of Escherichia coli. FEMS Microbiol Lett 2004; 236:221–226 [View Article]
    [Google Scholar]
  41. Xu C, Ren H, Wang S, Peng X. Proteomic analysis of salt-sensitive outer membrane proteins of Vibrio parahaemolyticus. Res Microbiol 2004; 155:835–842 [View Article]
    [Google Scholar]
  42. Samsonov VV, Samsonov VV, Sineoky SP. DcrA and dcrB Escherichia coli genes can control DNA injection by phages specific for BtuB and FhuA receptors. Res Microbiol 2002; 153:639–646 [View Article]
    [Google Scholar]
  43. Bayer ME. Areas of adhesion between wall and membrane of Escherichia coli. J Gen Microbiol 1968; 53:395–404 [View Article]
    [Google Scholar]
  44. Benz R, Jones MD, Younas F, Maier E, Modi N et al. OmpW of Caulobacter crescentus functions as an outer membrane channel for cations. PLoS One 2015; 10:e0143557 [View Article]
    [Google Scholar]
  45. Kao D-Y, Cheng Y-C, Kuo T-Y, Lin S-B, Lin C-C et al. Salt-responsive outer membrane proteins of Vibrio anguillarum serotype O1 as revealed by comparative proteome analysis. J Appl Microbiol 2009; 106:2079–2085 [View Article]
    [Google Scholar]
  46. Du D, Wang Z, James NR, Voss JE, Klimont E et al. Structure of the AcrAB-TolC multidrug efflux pump. Nature 2014; 509:512–515 [View Article]
    [Google Scholar]
  47. Glaasker E, Konings WN, Poolman B. Glycine betaine fluxes in Lactobacillus plantarum during osmostasis and hyper- and hypo-osmotic shock. J Biol Chem 1996; 271:10060–10065 [View Article]
    [Google Scholar]
  48. Lamark T, Styrvold OB, Strøm AR. Efflux of choline and glycine betaine from osmoregulating cells of Escherichia coli. FEMS Microbiol Lett 1992; 96:149–154 [View Article]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/micro/10.1099/mic.0.001287
Loading
/content/journal/micro/10.1099/mic.0.001287
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error