1887

Abstract

Four strains of aerobic, Gram-negative rods, motile by means of a single polar flagellum, that produced phenolic anti-methicillin-resistant (MRSA) substances and brown-pigmented colonies, were isolated from sea water. The G+C content of the DNA ranged from 39·9 to 40·6 mol%. The isolates grew at 18–37 °C and pH 6·5–9·5 (optimal pH 7·5–9) and in medium containing 1–5 % (w/v) NaCl (optimal NaCl concentration 2–3·5 %). The isolates grew optimally in medium dissolved in 40–100 % artificial sea water. Based on 16S rDNA similarities, the novel strains were closely related to and , with 96·3 and 95·7 % sequence similarity, respectively. However, the strains could be differentiated from by seven traits and from by 10 traits. Analysis of DNA–DNA relatedness to these related species revealed low levels of DNA hybridization (19·6 % to and 22·4 % to ). However, the type strain, O-BC30, and the other three bacterial isolates showed high DNA relatedness to each other, ranging from 84·8 to 93·7 %. Based on the results of phenotypic characterization, phylogenetic analysis based on 16S rDNA sequences and DNA–DNA hybridization, it is concluded that these isolates represent a novel species in the genus . Because the type strain, O-BC30 (=IAM 14989 =KCTC 12086), produces phenolic anti-MRSA substances, the name proposed for this novel species is sp. nov.

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2003-03-01
2024-04-19
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References

  1. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. 1990; Basic local alignment search tool. J Mol Biol 215:403–410 [CrossRef]
    [Google Scholar]
  2. Archer G. L., Bosilevac J. M. 2001; Signaling antibiotic resistance in staphylococci. Science 291:1915–1916 [CrossRef]
    [Google Scholar]
  3. Baumann P., Gauthier M. J., Baumann L. 1984; Genus Alteromonas Baumann, Baumann, Mandel and Allen, 1972, 418AL. In Bergey's Manual of Systematic Bacteriology vol 1 pp 343–352Edited by Krieg N. R., Holt J. G. Baltimore: Williams & Wilkins;
    [Google Scholar]
  4. Brosius J., Palmer M. L., Kennedy P. J., Noller H. F. 1978; Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli . Proc Natl Acad Sci U S A 75:4801–4805 [CrossRef]
    [Google Scholar]
  5. Egan S., Holmström C., Kjelleberg S. 2001; Pseudoalteromonas ulvae sp. nov., a bacterium with antifouling activities isolated from the surface of a marine alga. Int J Syst Evol Microbiol 51:1499–1504
    [Google Scholar]
  6. Ezaki T., Hashimoto Y., Yabuuchi E. 1989; Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224–229 [CrossRef]
    [Google Scholar]
  7. Gauthier M. J. 1976; Alteromonas rubra sp. nov., a new marine antibiotic-producing bacterium. Int J Syst Bacteriol 26:459–466 [CrossRef]
    [Google Scholar]
  8. Gauthier M. J. 1977; Alteromonas citrea , a new gram-negative, yellow-pigmented species from seawater. Int J Syst Bacteriol 27:349–354 [CrossRef]
    [Google Scholar]
  9. Gauthier M. J. 1982; Validation of the name Alteromonas luteoviolacea . Int J Syst Bacteriol 32:82–86 [CrossRef]
    [Google Scholar]
  10. Gauthier M. J., Breittmayer V. A. 1979; A new antibiotic-producing bacterium from seawater: Alteromonas aurantia sp. nov. Int J Syst Bacteriol 29:366–372 [CrossRef]
    [Google Scholar]
  11. Gauthier G., Gauthier M., Christen R. 1995; Phylogenetic analysis of the genera Alteromonas , Shewanella , and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations. Int J Syst Bacteriol 45:755–761 [CrossRef]
    [Google Scholar]
  12. Hanefeld U., Floss H. G., Laatsch H. 1994; Biosynthesis of the marine antibiotic pentabromopseudilin. Part 1. The benzene ring. J Org Chem 59:3604–3608 [CrossRef]
    [Google Scholar]
  13. Hiramatsu K., Cui L., Kuroda M., Ito T. 2001; The emergence and evolution of methicillin-resistant Staphylococcus aureus . Trends Microbiol 9:486–493 [CrossRef]
    [Google Scholar]
  14. Holmström C., Kjelleberg S. 1999; Marine Pseudoalteromonas species are associated with higher organisms and produce biologically active extracellular agents. FEMS Microbiol Ecol 30:285–293 [CrossRef]
    [Google Scholar]
  15. Holmström C., James S., Neilan B. A., White D. C., Kjelleberg S. 1998; Pseudoalteromonas tunicata sp. nov., a bacterium that produces antifouling agents. Int J Syst Bacteriol 48:1205–1212 [CrossRef]
    [Google Scholar]
  16. Holt J. G., Krieg N. L. 1994; Enrichment and isolation. In Methods for General and Molecular Bacteriology pp 179–215Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. Washington, DC: American Society for Microbiology;
    [Google Scholar]
  17. Hugh R., Leifson E. 1953; The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various Gram-negative bacteria. J Bacteriol 66:24–26
    [Google Scholar]
  18. Isnansetyo A., Horikawa M., Kamei Y. 2001; In vitro anti-methicillin-resistant Staphylococcus aureus activity of 2,4-diacetylphloroglucinol produced by Pseudomonas sp. AMSN isolated from a marine alga. J Antimicrob Chemother 47:724–725 [CrossRef]
    [Google Scholar]
  19. Ivanova E. P., Kiprianova E. A., Mikhailov V. V., Levanova G. F., Garagulya A. D., Gorshkova N. M., Yumoto N., Yoshikawa S. 1996; Characterization and identification of marine Alteromonas nigrifaciens strains and emendation of the description. Int J Syst Bacteriol 46:223–228 [CrossRef]
    [Google Scholar]
  20. Ivanova E. P., Kiprianova E. A., Mikhailov V. V. 9 other authors 1998; Phenotypic diversity of Pseudoalteromonas citrea from different marine habitats and emendation of the description. Int J Syst Bacteriol 48:247–256 [CrossRef]
    [Google Scholar]
  21. Ivanova E. P., Sawabe T., Lysenko A. M. 8 other authors 2002a; Pseudoalteromonas ruthenica sp. nov., isolated from marine invertebrates. Int J Syst Evol Microbiol 52:235–240
    [Google Scholar]
  22. Ivanova E. P., Shevchenko L. S., Sawabe T., Lysenko A. M., Svetashev V. I., Gorshkova N. M., Satomi M., Christen R., Mikhailov V. V. 2002b; Pseudoalteromonas maricaloris sp. nov., isolated from an Australian sponge, and reclassification of [ Pseudoalteromonas aurantia ] NCIMB 2033 as Pseudoalteromonas flavipulchra sp. nov. Int J Syst Evol Microbiol 52:263–271
    [Google Scholar]
  23. Kaatz G. W., Seo S. M., O'Brien L., Wahiduzzaman M., Foster T. J. 2000; Evidence for the existence of a multidrug efflux transporter distinct from NorA in Staphylococcus aureus . Antimicrob Agents Chemother 44:1404–1406 [CrossRef]
    [Google Scholar]
  24. Marmur J. 1961; A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3:208–218 [CrossRef]
    [Google Scholar]
  25. McCarthy S. A., Johnson R. M., Kakimoto D., Sakata T. 1985; Effects of various agents on the pigment (violacein) and antibiotic production of Alteromonas luteoviolacea . Bull Jpn Soc Sci Fish 51:1115–1121 [CrossRef]
    [Google Scholar]
  26. Novick N. J., Tyler M. E. 1985; Isolation and characterization of Alteromonas luteoviolacea strains with sheathed flagella. Int J Syst Bacteriol 35:111–113 [CrossRef]
    [Google Scholar]
  27. Östling J., Goodman A., Kjelleberg S. 1991; Behaviour of IncP-1 plasmids and a miniMu transposon in a marine Vibrio sp.: isolation of starvation inducible lac operon fusions. FEMS Microbiol Ecol 86:83–94 [CrossRef]
    [Google Scholar]
  28. Page R. D. M. 1996; TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357–358
    [Google Scholar]
  29. Rosselló-Mora R., Amann R. 2001; The species concept for prokaryotes. FEMS Microbiol Rev 25:39–67 [CrossRef]
    [Google Scholar]
  30. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
  31. Sako Y., Nomura N., Uchida A., Ishida Y., Morii H., Koga Y., Hoaki T., Maruyama T. 1996a; Aeropyrum pernix gen. nov., sp. nov. a novel aerobic hyperthermophilic archaeon growing at temperatures up to 100 °C. Int J Syst Bacteriol 46:1070–1077 [CrossRef]
    [Google Scholar]
  32. Sako Y., Takai K., Ishida Y., Uchida A., Katayama Y. 1996b; Rhodothermus obamensis sp. nov., a modern lineage of extremely thermophilic marine bacteria. Int J Syst Bacteriol 46:1099–1104 [CrossRef]
    [Google Scholar]
  33. Sawabe T., Makino H., Tatsumi M., Nakano K., Tajima K., Iqbal M. M., Yumoto I., Ezura Y., Christen R. 1998; Pseudoalteromonas bacteriolytica sp. nov., a marine bacterium that is the causative agent of red spot disease of Laminaria japonica . Int J Syst Bacteriol 48:769–774 [CrossRef]
    [Google Scholar]
  34. Smibert R. M., Krieg N. R. 1994; Phenotypic characterization. In Methods for General and Molecular Bacteriology pp 607–654Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. Washington, DC: American Society for Microbiology;
    [Google Scholar]
  35. Stackebrandt E., Goebel B. M. 1994; Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846–849 [CrossRef]
    [Google Scholar]
  36. Tamaoka J., Komagata K. 1984; Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25:125–128 [CrossRef]
    [Google Scholar]
  37. Thomson J. D., Higgins D. G., Gibson T. J. 1994; clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680 [CrossRef]
    [Google Scholar]
  38. Venkateswaran K., Dohmoto N. 2000; Pseudoalteromonas peptidolytica sp. nov., a novel marine mussel-thread-degrading bacterium isolated from the Sea of Japan. Int J Syst Evol Microbiol 50:565–574 [CrossRef]
    [Google Scholar]
  39. Willems A., Doignon-Bourcier F., Goris J., Coopman R., de Lajudie P., De Vos P., Gillis M. 2001; DNA–DNA hybridization study of Bradyrhizobium strains. Int J Syst Evol Microbiol 51:1315–1322
    [Google Scholar]
  40. Witte W. 1999; Antibiotic resistance in Gram-positive bacteria: epidemiological aspects. J Antimicrob Chemother 44:Suppl. A1–9
    [Google Scholar]
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