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Abstract

A Gram-negative, non-spore-forming, rod-shaped bacterial strain, K107, was isolated from sludge collected from a textile dye works in Korea and its taxonomic position was investigated by means of a polyphasic analysis. Strain K107 contained Q-10 as the predominant ubiquinone. The major fatty acids (>10 % of total fatty acids) were C 7 and C 2-OH. The DNA G+C content was 57.0 mol%. A phylogenetic analysis based on 16S rRNA gene sequences showed that strain K107 was closely related to the genera , and . Strain K107 exhibited 16S rRNA gene sequence similarity values of 96.3–97.1 % with respect to the type strains of two species and 94.8–96.8 % with respect to members of the genera and . A phylogenetic analysis based on gene sequences showed that strain K107 forms a distinct phylogenetic lineage within the . The gene sequence of strain K107 showed similarity values of 84.5 % with respect to type strains of species and values of 77.6–83.1 % with respect to members of the genera , and . Strain K107 could be differentiated from phylogenetically related genera by differences in phenotypic properties and fatty acid profiles. On the basis of phenotypic, chemotaxonomic and phylogenetic data, strain K107 represents a novel genus and species, for which the name gen. nov., sp. nov. is proposed. The type strain of is strain K107 (=KCTC 12981 =CCUG 54520).

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2008-01-01
2024-03-28
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References

  1. Corbel, M. J. & Brinley-Morgan, W. J.(1984). Genus Brucella Meyer and Shaw 1920. In Bergey's Manual of Systematic Bacteriology, vol. 1, pp. 377–388. Edited by N. R. Krieg & J. G. Holt. Baltimore: Williams & Wilkins.
  2. Cowan, S. T. & Steel, K. J.(1965).Manual for the Identification of Medical Bacteria. London: Cambridge University Press.
  3. Dees, S., Thanabalasundrum, S., Moss, C. W., Hollis, D. G. & Weaver, R. E.(1980). Cellular fatty acid composition of group IVe, a nonsaccharolytic organism from clinical sources. J Clin Microbiol 11, 664–668. [Google Scholar]
  4. Dees, S. B., Hollis, D. G., Weaver, R. E. & Moss, C. W.(1981). Cellular fatty acids of Brucella canis and Brucella suis. J Clin Microbiol 14, 111–112. [Google Scholar]
  5. Gaunt, M. W., Turner, S. L., Rigottier-Gois, L., Lloyd-Macgilp, S. A. & Young, J. P. W.(2001). Phylogenies of atpD and recA support the small subunit rRNA-based classification of rhizobia. Int J Syst Evol Microbiol 51, 2037–2048.[CrossRef] [Google Scholar]
  6. Kämpfer, P., Rosselló-Mora, R., Scholz, H. C., Welinder-Olsson, C., Falsen, E. & Busse, H.-J.(2006). Description of Pseudochrobactrum gen. nov., with the two species Pseudochrobactrum asaccharolyticum sp. nov. and Pseudochrobactrum saccharolyticum sp. nov. Int J Syst Evol Microbiol 56, 1823–1829.[CrossRef] [Google Scholar]
  7. Kämpfer, P., Scholz, H., Huber, B., Thummes, K., Busse, H.-J., Maas, E. W. & Falsen, E.(2007). Description of Pseudochrobactrum kiredjianiae sp. nov. Int J Syst Evol Microbiol 57, 755–760.[CrossRef] [Google Scholar]
  8. Komagata, K. & Suzuki, K.(1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161–207. [Google Scholar]
  9. Lanyi, B.(1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1–67. [Google Scholar]
  10. Sasser, M.(1990).Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
  11. Tamaoka, J. & Komagata, K.(1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125–128.[CrossRef] [Google Scholar]
  12. Teyssier, C., Marchandin, H., Jean-Pierre, H., Masnou, A., Dusart, G. & Jumas-Bilak, E.(2007).Ochrobactrum pseudintermedium sp. nov., a novel member of the family Brucellaceae, isolated from human clinical samples. Int J Syst Evol Microbiol 57, 1007–1013.[CrossRef] [Google Scholar]
  13. Tripathi, A. K., Verma, S. C., Chowdhury, S. P., Lebuhn, M., Gattinger, A. & Schloter, M.(2006).Ochrobactrum oryzae sp. nov., an endophytic bacterial species isolated from deep-water rice in India. Int J Syst Evol Microbiol 56, 1677–1680.[CrossRef] [Google Scholar]
  14. Urakami, T., Oyanagi, H., Araki, H., Suzuki, K. & Komagata, K.(1990). Recharacterization and emended description of the genus Mycoplana and description of two new species, Mycoplana ramosa and Mycoplana segnis. Int J Syst Bacteriol 40, 434–442.[CrossRef] [Google Scholar]
  15. Yoon, J.-H., Kim, H., Kim, S.-B., Kim, H.-J., Kim, W. Y., Lee, S. T., Goodfellow, M. & Park, Y.-H.(1996). Identification of Saccharomonospora strains by the use of genomic DNA fragments and rRNA gene probes. Int J Syst Bacteriol 46, 502–505.[CrossRef] [Google Scholar]
  16. Yoon, J.-H., Lee, S. T. & Park, Y.-H.(1998). Inter- and intraspecific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rRNA gene sequences. Int J Syst Bacteriol 48, 187–194.[CrossRef] [Google Scholar]
  17. Yoon, J.-H., Kang, K. H. & Park, Y.-H.(2003).Psychrobacter jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 53, 449–454.[CrossRef] [Google Scholar]
  18. Yoon, J.-H., Kang, S.-J., Kim, W. & Oh, T.-K.(2007a).Pigmentiphaga daeguensis sp. nov., isolated from wastewater of a dye works, and emended description of the genus Pigmentiphaga. Int J Syst Evol Microbiol 57, 1188–1191.[CrossRef] [Google Scholar]
  19. Yoon, J.-H., Kang, S.-J., Park, S. & Oh, T.-K.(2007b).Caenispirillum bisanense gen. nov., sp. nov., isolated from sludge of a dye works. Int J Syst Evol Microbiol 57, 1217–1221.[CrossRef] [Google Scholar]
  20. Yoon, J.-H., Kang, S.-J. & Oh, T.-K.(2007c).Chryseobacterium daeguense sp. nov., isolated from wastewater of a textile dye works. Int J Syst Evol Microbiol 57, 1355–1359.[CrossRef] [Google Scholar]
  21. Yoon, J.-H., Park, S. E., Kang, S.-J. & Oh, T.-K.(2007d).Rheinheimera aquimaris sp. nov., isolated from seawater of the East Sea in Korea. Int J Syst Evol Microbiol 57, 1386–1390.[CrossRef] [Google Scholar]
  22. Zurdo-Piňeiro, J. L., Rivas, R., Trujillo, M. E., Vizcaíno, N., Carrasco, J. A., Chamber, M., Palomares, A., Mateos, P. F., Martínez-Molina, E. & Velázquez, E.(2007).Ochrobactrum cytisi sp. nov., isolated from nodules of Cytisus scoparius in Spain. Int J Syst Evol Microbiol 57, 784–788.[CrossRef] [Google Scholar]
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vol. , part 1, pp. 168 - 172

Cellular fatty acid compositions (%) of strain K107 and the type strains of two species. [PDF](21 KB)



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